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Model Organism Bring Your own Database Interface Conference, ... Blue-Jay (P Gordon) and RGD prototype (S Twigger) Menu-style clients. MOBY Graphs (M Senger) ...
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System through which a client interacts with multiple sources of ... Clarence Kwan. Michael Ng. Peter Pichlak. Lixin Shen. Contact. http://www.biomoby.org ...
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Moby-S: follows the webservice paradigm. S-Moby: using semantic web technology (not covered here) ... Octave. PlaNet partners. Moby developers (esp. Mark ...
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A Life Science Scenario 'To answer most interesting biological problems, you need to combine ... A Life Science Scenario contd. The Problem. Finding the ...
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iCAPTURE Centre, St. Paul's Hospital. Vancouver, BC. Downloading Taverna ... Between releases, the Moby functionality may be updated and you can find ...
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Use that FASTA to do a BLAST search against the Snapdragon (Antirrhinum) database. Extract the 'hit' Antirrhinum sequence accession numbers from the selected Blast ...
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Italy generated brilliant scientists, but lagged in ... Damian Gessler, Wednesday 4:15 pm, Canyon IV. http://www.biomoby.org. Moving Towards Nationhood ...
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GRIMOIRES / WebDAV directory. Tied to BioMOBY Central. Semantic discovery ... GRIMOIRE / WebDAV directory. Tie into BioMOBY central ...
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BioMOBY an biological database interoperability program (biomoby.org) ... A collection's database record of the specimen? What about multiple labels? ...
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Developer/2000; Power Builder; Visual Basic. WEB (JAVA(jsp,servlets) ... CLUSTER OHIO: http://www.osc.edu/hpc/cluster. WEB SERVICES: MOBY: http://www.biomoby.org ...
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Provides a generic way of searching and retrieving ... DCOM- 19760925. IS - 0070-4075. VI - 41. Query. Service. ID. ID. Document in MEDLINE Display Format ...
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Title: Slide 1 Author: Mark Wilkinson Last modified by: c082000 Created Date: 9/14/2005 3:32:30 PM Document presentation format: On-screen Show Company
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'I3C promotes and guides the development of interoperable software ... Drag objects from palette. Services and data sources discovered in the registry ...
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PlaNet is a distributed, shared effort among ... Yellow rosette. Leaves rounded. Dwarf. Late flowering. SALK_0981220. Gene Ontology. Sequence views ...
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Flanders Interuniversity for Biotechnology (VIB), Gent, Belgium ... Select two organisms and find the putative othologs between them. www.eu-plant-genome.net ...
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Model Organism Bring Your own Database Interface Conference, Sept, ... Blue-Jay (P Gordon) and Rat Genome Database prototype (S Twigger) Menu-style clients ...
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An aggregator is a type of software that retrieves syndicated web content that ... Aggregator. Agsimos. The Arabidopsis Aggregator. tAIGa. litRep. MAtDB ...
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Code-Generator0.5.cgi (by Clarence Kwan) SQL Query. Register and Deregister Web Services ... Clarence Kwan. And. All others @ Dry Lab. Thank you. For more ...
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Fig. 2: Screenshot of Moby dashboard. ... Moby web services in a more user-friendly way. Here, one can select the GCP datatypes registered in the Moby central ...
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Hyponyms. 340. Synonyms. 1) Collection: 2 days , 65 ... hyponym. synonym. 2) Evaluation: 3 days , 68 participants, 11,545 votes. Initial acquisition ...
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Have a well known data representation based on ontology ... 1) Ontology browsing & service selection. 2) Input submission. 3) Selection output name ...
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... on use, observations etc, even logos if that is what the ... Superman. Stomata. Flower. Genomics / annotation. Transcriptomics. Proteomics. metabolomics ...
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Archive data and trees (repeat old analyses with ... The case of the Harp seal. TreeBASE and GenBank have harp seals under two different names, only ITIS knows ...
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BioRDF Breakout Introduction Kei Cheung Mage-tab Michael Miller vOID Jun Zhao (remote) aTag Matthias Samwald (remote) Discussion All
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A personal journey through the Semantic Web and Web Services ... Description in: www.ksl.stanford.edu/people/dlm/papers/ontologies-come-of-age-abstract.html ...
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Martijn Schuemie, Erasmus University Rotterdam ... Sugawara, Center for Information Biology and DNA Data Bank of Japan, National ...
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These resources in Bioinformatics are generally: ... Bind. Service registry. Service Provider. Service Descriptions. Service Description. Service ...
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Taverna, myExperiment and caGrid: combining our strengths for caBIG
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Scientific Workflows Overview More background on workflows Kepler Details Example Scientific Workflows Other Workflow Systems Recap from last time Background: What is ...
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Taverna Workflows. A beginners guide. Mark Wilkinson & Edward Kawas ... If you do not have Java already installed, you can download it from this URL: ...
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Multiple instances of CPU intensive tasks running on separate processors. Single instance of a CPU intensive task divided up among all available processors ...
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Daisy Belfield, Zoe Emmerson, Graeme Gill, Neil Graham, Nick James, Lubomira ... Roberts, Beatrice Schildknecht, Mo Topham, Henrik Townsend, and Emma Wigmore. ...
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Dag Endresen, Nordic Gene Bank. Johan B ckman, Nordic Gene Bank. Helmut Kn pffer, IPK Gatersleben ... Exchange of germplasm datasets with PyWrapper/BioCASE, ...
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A myGrid Project Tutorial (3) Dr Mark Greenwood University of Manchester With considerable help from Justin Ferris, Peter Li, Phil Lord, Chris Wroe and the rest of ...
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Human Media Interaction Group, University of Twente. Han Rauwerda, ... A control flow workflow engine: Yawl (www.yawlfoundation.org) Late binding of services ...
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Continue model discussions toward MAGE v2. Document Model and changes as ... an issue about how we handle deprecated instances and classes; this will also be ...
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HoneyBee genome. The MotifNetwork is a suite of workflows. Generation of new data and techniques ... wide comprehensive analysis on the recent honey bee genome ...
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Different types of electrostatics could be used. Solvent. Biomolecules can be simulated in gas phase, but this give little biologic information ...
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Bioinformatics Tools and Resources for the Life Science Researcher
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Service discovery is a difficult task in large scale, open distributed systems ... S John Dickman, Claudia di Napoli, Richard Lawley, Ananth Krishna, Victor Tan ...
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RDF(S) similar to GO in terms of expressivity- used in Feta. Upper level. ontology ... is in the middle for expressivity. Feta Futures. GRIMOIRES. UDDI and ...
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Life Science Identifiers. Official standard ... LSID Resources. LSID Articles and code from IBM ... SEEK is funded by National Science Foundation award 0225676. ...
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Web Services, Workflows & Taverna. Superglue for the Semantic Web ... Outgoing personality, friendly nature, charming' Chr 7 ~155 Mb ~1.5 Mb. 7q11.23. C-cen ...
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Allow users to construct such models from libraries of available components in a ... Styx Grid Service. Environmental eScience, ocean temperature analysis etc ...
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Queries distributed across directories of collaborating services ... Simple client program methods for computable use of directories ...
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University of British Columbia. iCAPTUR4E Centre, St. ... Define web service interfaces using these data-types. Register these interfaces in a 'yellow pages' ...
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... configured e..g. the with MIM morbid only' filter (the disease association ... (by selecting attributes) and select Mim morbid accession' under the External ...
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public central databases like GEO and ArrayExpress ... Acknowledgements. Alexey Antonov. Jan Budczies. Matthias Oesterheld. Sabine Tornow. Werner Mewes ...
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myGrid: Une Vision globale
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Bioinformatics Tools and Resources for the Life Science Researcher
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Genome objects fit in directories, search & retrieve as annotated sequence (like ... Same directory methods work for objects, databases, software and other resources ...
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What does the Semantic Web have to do with Organ Transplant Rejection ... rdf xmlns:primate= http://PrimateOntology#' primate:Gorilla /primate:Gorilla ...
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Chris Wroe, Phillip Lord, Robert Stevens & Carole Goble. The University of Manchester, UK ... inputs & outputs are 'string' Domain specific descriptions of ...
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Italy generated brilliant scientists, but lagged in technology & industrialization ... Ensembl via SQL Access. Italy, ca 2000. Europe, ca 2000. Bioinformatics, ...
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The myGrid project: towards a 'semantic grid' for ... Ontology editing: OilEd. http://oiled.man.ac.uk/ Consistency check if knowledge is meaningful ...
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