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Extracting Clinical Information & Outcomes Annotation to Enable Discovery ... Over 10,400 cancer patients biospecimens ... Pilot program initiated with Prostate SPOREs ...
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caTissue Core/ERNE integration. Martin Ferguson & Ian Fore. 1 Nov 2005. EDRN Informatics meeting ... become a node on ERNE. Proposed Solution. UCSF adopt ...
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Adoption and Use of caTissue Suite in a Multi-Repository Academic Environment * * * * * * Biospecimen Banking has Evolved Highly Complex Informatics Requirements ?
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caTissue Core In Action: An Introduction for Users A Tool Demonstration from caBIG
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Define the next level of detail that realizes ... Our high-level objectives ... sharing and consumption scenario between institutions in a meaningful fashion ...
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Adoption and Use of caTissue Suite in a Multi-Repository Academic Environment * * * * * * Biospecimen Banking has Evolved Highly Complex Informatics Requirements ?
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The goal of this demo is to introduce you to the. capabilities and benefits of a tool that is available ... for adoption from caBIG . You can also adapt your ...
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Local configuration and deployment of caTissue Core. ... Paul Fearn. Kai Lin. Kevin Regan. Milena Sheintul. John Speakman. Li Zeng. Thank you! ...
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... Annotation Engine - beta. caTISSUE Core - alpha ... caTIES beta. caTISSUE Core - beta. caTISSUE Core Final ... Prostate. SPORE. caTISSUE. Core (WashU) ...
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Tissue Banking (caTISSUE Suite) Gene Expression Database (caArray) ... Online Interactive Training. Down-loadable User Materials ...
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Make it work! Project History. Ongoing project since 2004 ... System Requirements. Evaluate IPBS Protocol requirements against the data elements in caTissue ...
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Institutional Internal Integration Workshop
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Duke Tissue Bank Informatics Review Raj C. Dash, MD Assistant Professor of Pathology Chris Hubbard Director of Pathology Informatics Duke University Medical Center
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Data entry at point of data collection. Front-end SNOMED CT ... (Hemi-hepatectomy. July 2002) Outside Slide Review (Jan 2002) Autopsy (Jan 2003) Lab Data Report ...
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InterSPORE Prostate Biomarker StudyIPBS
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Scientists with individual biospecimen banking efforts. Unregulated use of clinical paraffin tissue blocks ... Variables levels of biospecimen processing / QA ...
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SWOG, ECOG, COG, EDRN, NCIC, CALGB, NCCTG, RTOG ... is recorded in a stand alone relational database (e.g. Access, 4D, Filemaker Pro) ...
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Specimen Resource Locator II
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First rule of science: Valid data are reproducible. The ... Type of anesthesia. Duration of anesthesia. Arterial clamp time. Biospecimen Research Program: ...
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caBIG Tissue Banks and Pathology Tools - Priorities and Future. Face to Face meeting Nov 2006 ... Supporting compliance with Guidelines for NCI Supported ...
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The MAJORITY of CDEs created by the information models of these tools are ... models and generate BRIDG harmonizable artifacts (artifacts include both, static ...
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... process. Application navigation. Related Software Requirements ... Development progress. Continued meetings/web conferences. Release schedules and testing ...
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Monthly TBPT Newcomer calls. Objective: Bringing newcomers up to speed with the TBPT workspace. ... calls, or monthly newcomer calls. Call-in Information: ...
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Title: caBIG Seminar Overview Author: kennya Last modified by: Registered user Created Date: 9/13/2005 3:59:16 PM Document presentation format
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The IndianaCTSI Biorepository is committed to serving the repository needs for ... 196 sq ft laboratory support room with autoclave and dry/wet ice storage. 2 offices ...
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caBIG and TBPT Activities
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Secondly, in order to make a statistically valid analysis, there may not be ... Dorian. Duke. Authentication Plugin. Duke Domain Controller. NT Security. Grid ...
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Online 'Town Hall' quarterly. Addresses solicited questions ... Fox Chase. Fred Hutchinson. GE Global Research Center. Georgetown University-Lombardi ...
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Overview of The Cancer Biomedical Informatics Grid (caBIG ): Connecting the Cancer Community Talk Agenda Introduction and Background Program Motivations Program ...
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caBIG background (5 min, 8 s) Goals, program ... caBIG compatibility (30 min, 21 s demonstration) ... Grouper. authorize. caBIG Compatibility ...
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What are all the patients that are triple negative (ER, PR, and HER2/NEU negative) ... patients over the age of 50 that have survived breast cancer after surgery? ...
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Scientists need access to data early and in an integrated fashion (one stop shopping) ... early to deal with logistical issues far in advance of needing the ...
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Enabling the Molecular Medicine Revolution in Cancer through Biomedical Informatics
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Department of Oncology. University of Cambridge. Overview. Some National Grids for Cancer Research ... Department of Oncology, University of Cambridge ...
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Data elements encompass patient demographics, family/medical history,lifestyle, ... DeID installation. provide de-identified queries to TJU community ...
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Images are streamed for efficient access. ... Imaging and Pathology Project. DOMAIN WORKSPACE 2. Integrative Cancer Research. MyGrid ...
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Q1: Please discuss the new funding mechanism. Year 3 Workspace ... FOIA. Q12: Freedom of Information Act - Has there been any discussion concerning the ...
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The Human Genome Project. What is Mutation Profiling? ... BLAST to genome ensures single amplicon generation. Heuristic-based amplicon selection ...
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... of proprietary coding (customisation expensive/time dependent on ... The decision was made to adopt the core system of Caisis and to customise features needed ...
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The goal of BOF is to introduce participants to ISO standards for software ... BAM? DAM? 11179? 21090? What are the risks/weaknesses? 5. Introduction RM-ODP ...
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Query SIG Recommendations
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Quality assurance. Overreads. Data analysis. Quality assurance. Software development ... Support repurposing of data generated by and archived for clinical trials ...
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Interoperability in Clinical Trials
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The Roslyn and Jeremy Meyer funds Yale Dermatology Department ... 1 Dermatology. 2 YCCC/Oncology. 3 Pathology. 4 Surgery. 5 Genetics. 6 Immunobiology. 7 Epidemiology ...
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Discover, develop and validate biomarkers for cancer detection, diagnosis and ... from malignant prostatic disease in men with elevated PSA using serum TSP-1. ...
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The caBIG/HL7/CDISC Structured Protocol Representation John Speakman Douglas B. Fridsma, MD, PhD Center for Biomedical Informatics Center for Pathology and Oncology ...
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Yale Center for Clinical Investigation: From the lab, to the clinic to the community
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Distributed, Modular Grid Software for Management and Exploration of Data in Patient-Centric Healthcare IT
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caTIES Processing Text to Share Data and Tissue
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Breast Cancer Tissue Bank Funded by NHMRC, National Breast Cancer Foundation, Cancer Institute NSW Caisis: the database solution for a multi-site tissue bank
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Pioneering Work in Protein Patterns as Diagnostic. Biomarkers (Semmes, Liotta) ... Brigham and Women's Hospital (BWH) Daniel Cramer, M.D. Institution. NAME ...
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Good Cells, Bad Cells, and the Grid
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NCI Center for Bioinformatics. Cancer Biomedical Informatics Grid (caBIGTM) ... Learn about the existing bioinformatics infrastructure, caCORE, at https://ncicb. ...
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caBIG, an Open Platform for Interoperable Biomedical Informatics
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Introduction to BioinformaticsPractical Applications
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Fox Chase Cancer Center. Strategic Level Strategic Planning Working Group of the ... Take caBIG developed tools at Silver or Gold level of compliance, create ...
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