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CellML PowerPoint PPT Presentation
CellML - Rundown on what the CellML team do here. What is 'synthetic biology? ... (arrows show people who joined last year) 2001 ... Universal Scientific Brownie Points ...
Rundown on what the CellML team do here. What is 'synthetic biology? ... (arrows show people who joined last year) 2001 ... Universal Scientific Brownie Points ...
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Parameter Optimisation of Excitable Cell Models using CellML PowerPoint PPT Presentation
Parameter Optimisation of Excitable Cell Models using CellML - Parameter Optimisation of Excitable Cell Models using CellML. Ben Hui ... Parameter Identifiability Analysis on. Ionic Current Conductance. 7.178E-2. 9.507E-2 ...
Parameter Optimisation of Excitable Cell Models using CellML. Ben Hui ... Parameter Identifiability Analysis on. Ionic Current Conductance. 7.178E-2. 9.507E-2 ...
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Virtual Cell and CellML PowerPoint PPT Presentation
Virtual Cell and CellML - ... for Cell Analysis and Modeling. University of Connecticut Health ... Modeling reactions, diffusion, membrane transport, flow, electrical potential and currents ...
... for Cell Analysis and Modeling. University of Connecticut Health ... Modeling reactions, diffusion, membrane transport, flow, electrical potential and currents ...
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Model reuse with CellML: The Sachse myocytefibroblast model PowerPoint PPT Presentation
Model reuse with CellML: The Sachse myocytefibroblast model - Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, US ... tools PCEnv and COR to curate the coupled model removing duplicated ...
Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, US ... tools PCEnv and COR to curate the coupled model removing duplicated ...
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Registry of Standard Biological Models PowerPoint PPT Presentation
Registry of Standard Biological Models - Michigan iGEM Team 07. RoSBM. Challenges. Modeling takes time, expertize ... Data Connectivity. Parts. Models. Exp.Data. Sim.Data. Parts. Parts. Exp.Data ...
Michigan iGEM Team 07. RoSBM. Challenges. Modeling takes time, expertize ... Data Connectivity. Parts. Models. Exp.Data. Sim.Data. Parts. Parts. Exp.Data ...
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Digital Cells Nano-Bio-Info Technology PowerPoint PPT Presentation
Digital Cells Nano-Bio-Info Technology - Digital Cells Nano-Bio-Info Technology Introduction to Nanotechnology Image by John Alsop Outline Concept of a gene (extended) Gene Regulatory Networks (GRN) GRN and ...
Digital Cells Nano-Bio-Info Technology Introduction to Nanotechnology Image by John Alsop Outline Concept of a gene (extended) Gene Regulatory Networks (GRN) GRN and ...
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Biopath (BMOND) PowerPoint PPT Presentation
Biopath (BMOND) - BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
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Model Curation Edmund J. Crampin Auckland Bioengineering Institute PowerPoint PPT Presentation
Model Curation Edmund J. Crampin Auckland Bioengineering Institute - Levels are not a hierarchy Level 2 compliance may break Level ... well-posed. MIRIAM. Minimum Information Requested In the Annotation of (Biochemical) Models ...
Levels are not a hierarchy Level 2 compliance may break Level ... well-posed. MIRIAM. Minimum Information Requested In the Annotation of (Biochemical) Models ...
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JSim Simulation System PowerPoint PPT Presentation
JSim Simulation System - parameter optimization for curve fitting. Wide availability ... store related set of models, parameter sets, data set, plot pages and notes ...
parameter optimization for curve fitting. Wide availability ... store related set of models, parameter sets, data set, plot pages and notes ...
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Pathway (Network) Informatics @ MSKCC PowerPoint PPT Presentation
Pathway (Network) Informatics @ MSKCC - 3 research staff, 1 developer, 1 computing, 3 admin. Visiting Faculty: Jose Vilar ... Grants. Department of Energy. BioPAX. BioPAX = Biological Pathway Exchange ...
3 research staff, 1 developer, 1 computing, 3 admin. Visiting Faculty: Jose Vilar ... Grants. Department of Energy. BioPAX. BioPAX = Biological Pathway Exchange ...
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Systems Biology: An simple Introduction PowerPoint PPT Presentation
Systems Biology: An simple Introduction - Systems Biology: An Overview, Arthur Cheung 2006. 3. What is systems biology? ... Systems Biology: An Overview, Arthur Cheung 2006. 10. When things go wrong ...
Systems Biology: An Overview, Arthur Cheung 2006. 3. What is systems biology? ... Systems Biology: An Overview, Arthur Cheung 2006. 10. When things go wrong ...
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Biopath (BMOND) PowerPoint PPT Presentation
Biopath (BMOND) - BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
BioUML integrated platform for building virtual cell and virtual physiological human Fedor Kolpakov1,2, Nikita Tolstykh1,2, Elena Kutumova1,2, Ilya Kiselev1,2,
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Electron Transport Chain (Respiratory Chain) PowerPoint PPT Presentation
Electron Transport Chain (Respiratory Chain) - ... in a mitochondrion includes enzymes integrated in the inner mitochondrial membrane produces reducing equivalents (NADH+H+, FADH2) Respiratory chain ...
... in a mitochondrion includes enzymes integrated in the inner mitochondrial membrane produces reducing equivalents (NADH+H+, FADH2) Respiratory chain ...
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Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology PowerPoint PPT Presentation
Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology - 3Biomedical and Health Informatics. University of ... Biophysicists and bioengineers encode physics-based mathematical models of biological processes ...
3Biomedical and Health Informatics. University of ... Biophysicists and bioengineers encode physics-based mathematical models of biological processes ...
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Resources for Teaching Systems Biology PowerPoint PPT Presentation
Resources for Teaching Systems Biology - Biologists have been studying and modeling systems for decades (i.e. physiology) Current systems biology craze has resulted from recent technologies that allow ...
Biologists have been studying and modeling systems for decades (i.e. physiology) Current systems biology craze has resulted from recent technologies that allow ...
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E-services: operating strategy PowerPoint PPT Presentation
E-services: operating strategy - Title: E-services: operating strategy Author: Isabella Last modified by: Chris Created Date: 4/15/2005 3:13:39 PM Document presentation format: Bildschirmpr sentation
Title: E-services: operating strategy Author: Isabella Last modified by: Chris Created Date: 4/15/2005 3:13:39 PM Document presentation format: Bildschirmpr sentation
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BiNoM Tutorial PowerPoint PPT Presentation
BiNoM Tutorial - Andrei Zinovyev, Laurence Calzone. UMR U900 INSERM/Institut Curie/Ecole des Mines de Paris ... BiNoM is a plugin for Cytoscape. http://cytoscape.org/ Install ...
Andrei Zinovyev, Laurence Calzone. UMR U900 INSERM/Institut Curie/Ecole des Mines de Paris ... BiNoM is a plugin for Cytoscape. http://cytoscape.org/ Install ...
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The Physiome Project PowerPoint PPT Presentation
The Physiome Project - Chris Johnson. Rob MacLeod. Bruno Taccardi. Physiome Sciences. Tom Colatsky. Gang Chen ... Jeff Holmes. CVRTI/SCII. Anatomy. Completed or underway: Vent. geom. ...
Chris Johnson. Rob MacLeod. Bruno Taccardi. Physiome Sciences. Tom Colatsky. Gang Chen ... Jeff Holmes. CVRTI/SCII. Anatomy. Completed or underway: Vent. geom. ...
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A Diffusion Model of Platelet Derived Growth Factor PDGF for Hybrid Modeling of Intimal Hyperplasia PowerPoint PPT Presentation
A Diffusion Model of Platelet Derived Growth Factor PDGF for Hybrid Modeling of Intimal Hyperplasia - Time step must be small enough to satisfy this condition ... Used initial conditions of constant concentration of one in top half and zero in ...
Time step must be small enough to satisfy this condition ... Used initial conditions of constant concentration of one in top half and zero in ...
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BioPAX The Birth of A Data Exchange Language for Biological Pathways PowerPoint PPT Presentation
BioPAX The Birth of A Data Exchange Language for Biological Pathways - BOF Sunday. 30 July 2004. 7th BioOntologies Workshop. 20. BioPAX Supporting Groups. Groups ... Low Detail High Detail. 30 July 2004. 7th BioOntologies Workshop. 23 ...
BOF Sunday. 30 July 2004. 7th BioOntologies Workshop. 20. BioPAX Supporting Groups. Groups ... Low Detail High Detail. 30 July 2004. 7th BioOntologies Workshop. 23 ...
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BioUML PowerPoint PPT Presentation
BioUML - BioUML integrated platform for systems biology: From gene regulatory networks to modeling virtual cell and virtual physiological human Fedor Kolpakov
BioUML integrated platform for systems biology: From gene regulatory networks to modeling virtual cell and virtual physiological human Fedor Kolpakov
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Software Tools in Systems Biology PowerPoint PPT Presentation
Software Tools in Systems Biology - shafts and gears handled the brainwork with precision unmatched by any. contemporaneous machine. ... developed after World War II put the analyzer out to ...
shafts and gears handled the brainwork with precision unmatched by any. contemporaneous machine. ... developed after World War II put the analyzer out to ...
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BioPAX A Data Exchange Format for Biological Pathways PowerPoint PPT Presentation
BioPAX A Data Exchange Format for Biological Pathways - An open source community effort to build a data exchange format for biological pathways ... University of Colorado Health Sciences Center: I. Shah ...
An open source community effort to build a data exchange format for biological pathways ... University of Colorado Health Sciences Center: I. Shah ...
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Synthetic Biology (The Cell as a Nanosystem) PowerPoint PPT Presentation
Synthetic Biology (The Cell as a Nanosystem) - Synthetic Biology (The Cell as a Nanosystem) ARC Bioinformatics UC Davis Summer 2006 Synthetic Biology Nanotechnology is emulating biology Molecular assemblers ...
Synthetic Biology (The Cell as a Nanosystem) ARC Bioinformatics UC Davis Summer 2006 Synthetic Biology Nanotechnology is emulating biology Molecular assemblers ...
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Bioe131: Introduction to Computational Biology PowerPoint PPT Presentation
Bioe131: Introduction to Computational Biology - (Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...
(Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...
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Electron Transport Chain (Respiratory Chain) - exercise - PowerPoint PPT Presentation
Electron Transport Chain (Respiratory Chain) - exercise - - Electron Transport Chain (Respiratory Chain) - exercise - Vladim ra Kvasnicov ... can proceed under both aerobic and anaerobic conditions. is a reversible pathway ...
Electron Transport Chain (Respiratory Chain) - exercise - Vladim ra Kvasnicov ... can proceed under both aerobic and anaerobic conditions. is a reversible pathway ...
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Exploiting the Biophysical Semantics of Biosimulation Models PowerPoint PPT Presentation
Exploiting the Biophysical Semantics of Biosimulation Models - Organize the world's biosimulation models and make them universally ... extended from Hunter, P. J. & Borg, T. K. (2003). Nat Rev Mol Cell Biol 24(6):667-72. ...
Organize the world's biosimulation models and make them universally ... extended from Hunter, P. J. & Borg, T. K. (2003). Nat Rev Mol Cell Biol 24(6):667-72. ...
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XML%20for%20Model%20Specification:%20Introduction%20and%20Workshop PowerPoint PPT Presentation
XML%20for%20Model%20Specification:%20Introduction%20and%20Workshop - Commercial/free development software available ... Put XML model spec on your website, links to code to run it. ... working where the domain is stable (SBML, ...
Commercial/free development software available ... Put XML model spec on your website, links to code to run it. ... working where the domain is stable (SBML, ...
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Emergent and Critical Phenomena in Cardiac Energy Metabolism inthe Healthy Heart,in Ischemia, and in PowerPoint PPT Presentation
Emergent and Critical Phenomena in Cardiac Energy Metabolism inthe Healthy Heart,in Ischemia, and in - Fan Wu. Postdoctoral Fellow. Medical College of Wisconsin. Kathryn LaNoue ... TAN, TEP, and CRtot in units of mmol s-1 (l cell)-1. Predicted DGATP at MVO2max ...
Fan Wu. Postdoctoral Fellow. Medical College of Wisconsin. Kathryn LaNoue ... TAN, TEP, and CRtot in units of mmol s-1 (l cell)-1. Predicted DGATP at MVO2max ...
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Towards a Complete Covering of SBML Functionalities PowerPoint PPT Presentation
Towards a Complete Covering of SBML Functionalities - kosmopolit s, has been used to describe a wide variety of important views in ... stoichiometry='1.0'/ /listOfReactants kineticLaw ...
kosmopolit s, has been used to describe a wide variety of important views in ... stoichiometry='1.0'/ /listOfReactants kineticLaw ...
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From biology to math and back PowerPoint PPT Presentation
From biology to math and back - MIRIAM URIs is a way to identify, in a stable and perennial way, elements, like ... MIRIAM URIs are not dependant on physical addresses (like the URLs used with a ...
MIRIAM URIs is a way to identify, in a stable and perennial way, elements, like ... MIRIAM URIs are not dependant on physical addresses (like the URLs used with a ...
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Synthetic Biology The Cell as a Nanosystem PowerPoint PPT Presentation
Synthetic Biology The Cell as a Nanosystem - With our gene synthesis process you can get synthetic DNA that conforms exactly ... Stem cell and gene therapy synergism. Role of Bioinformatics. Where are genes? ...
With our gene synthesis process you can get synthetic DNA that conforms exactly ... Stem cell and gene therapy synergism. Role of Bioinformatics. Where are genes? ...
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Existing Standards in Systems Biology PowerPoint PPT Presentation
Existing Standards in Systems Biology - PSI standard description of protein interaction data ... Specie (pool of molecules) Reaction. Support for mathematical formulations. Rate law ...
PSI standard description of protein interaction data ... Specie (pool of molecules) Reaction. Support for mathematical formulations. Rate law ...
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The Emergence of Systems Biology PowerPoint PPT Presentation
The Emergence of Systems Biology - Title: The Biologist's Workbench Author: Vijay Saraswat Last modified by: Vijay Saraswat Created Date: 10/18/2001 6:49:51 AM Document presentation format
Title: The Biologist's Workbench Author: Vijay Saraswat Last modified by: Vijay Saraswat Created Date: 10/18/2001 6:49:51 AM Document presentation format
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Cell Electrophysiology Simulation Environment CESE PowerPoint PPT Presentation
Cell Electrophysiology Simulation Environment CESE - Voltage clamp for complex model behavior. Data visualization ... Fancy plotter. Any model that is similar to that in our case? Simple stepper. Limited functions ...
Voltage clamp for complex model behavior. Data visualization ... Fancy plotter. Any model that is similar to that in our case? Simple stepper. Limited functions ...
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Computational Systems Biology PowerPoint PPT Presentation
Computational Systems Biology - Computational Systems Biology Prepared by: Rhia Trogo Rafael Cabredo Levi Jones Monteverde What are Biological Systems? Popular Notion: It is a complex system ...
Computational Systems Biology Prepared by: Rhia Trogo Rafael Cabredo Levi Jones Monteverde What are Biological Systems? Popular Notion: It is a complex system ...
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FROM PATHWAYS DATABASES TO NETWORK MODELS PowerPoint PPT Presentation
FROM PATHWAYS DATABASES TO NETWORK MODELS - ... S transition in the mammalian cell cycle. From a qualitative network to a kinetic ... eigenvalues are functions of cycles only. 50. Hurwitz determinants D1 = a1 ...
... S transition in the mammalian cell cycle. From a qualitative network to a kinetic ... eigenvalues are functions of cycles only. 50. Hurwitz determinants D1 = a1 ...
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Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc PowerPoint PPT Presentation
Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc - Synonyms. Provenance (not yet implemented) OWL DL to enable reasoning ... BioPAX: Synonyms species id='pyruvate' metaid='pyruvate' ...
Synonyms. Provenance (not yet implemented) OWL DL to enable reasoning ... BioPAX: Synonyms species id='pyruvate' metaid='pyruvate' ...
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EP4: Multiscale simulation and prediction of the drug safety problems related with hERG Multicellula PowerPoint PPT Presentation
EP4: Multiscale simulation and prediction of the drug safety problems related with hERG Multicellula - LQT can be produced by interfering with hERG trafficking ... Stelling (2004) Curr. Opin. Microb. Frameworks for biochemical networks modelling ...
LQT can be produced by interfering with hERG trafficking ... Stelling (2004) Curr. Opin. Microb. Frameworks for biochemical networks modelling ...
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Standards and languages in Computational System Biology PowerPoint PPT Presentation
Standards and languages in Computational System Biology - GeneOntology standard and ontology to describe gene function and regulation ... BioPAX ontology and format in OWL (XML) Ontology built using GKB Editor and Prot g ...
GeneOntology standard and ontology to describe gene function and regulation ... BioPAX ontology and format in OWL (XML) Ontology built using GKB Editor and Prot g ...
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SBML, BioSPICE Emerging Standards and Platforms for Systems Biology PowerPoint PPT Presentation
SBML, BioSPICE Emerging Standards and Platforms for Systems Biology - (Easy-to-use) Formula: Second approximation (MPI Magdeburg graphic, 2002) ... Testing, refining and validating the models using a range of cell experiments ...
(Easy-to-use) Formula: Second approximation (MPI Magdeburg graphic, 2002) ... Testing, refining and validating the models using a range of cell experiments ...
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BioPAX A Data Exchange Format for Biological Pathways PowerPoint PPT Presentation
BioPAX A Data Exchange Format for Biological Pathways - Provide a consistent data exchange format to make it easier for ... 0.4 kcal/mole. Delta G cml fructose-6-phosphate /cml Right cml glucose-6-phosphate /cml ...
Provide a consistent data exchange format to make it easier for ... 0.4 kcal/mole. Delta G cml fructose-6-phosphate /cml Right cml glucose-6-phosphate /cml ...
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Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc PowerPoint PPT Presentation
Semantic Web for Life Sciences Workshop Session VII: Semantic Aggregation, Integration, and Inferenc - A data exchange ontology and format for semantic ... speciesRef species='acetyl-CoA'/ speciesRef species='CO2'/ /listOfProducts listOfModifers ...
A data exchange ontology and format for semantic ... speciesRef species='acetyl-CoA'/ speciesRef species='CO2'/ /listOfProducts listOfModifers ...
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Measure PowerPoint PPT Presentation
Measure - The Center for Cell Analysis and Modeling focuses on creating ... Virtual FRAP' tool. Data-centric, predefined context. First prototype standalone application ...
The Center for Cell Analysis and Modeling focuses on creating ... Virtual FRAP' tool. Data-centric, predefined context. First prototype standalone application ...
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Chemoinformatics PowerPoint PPT Presentation
Chemoinformatics - Current buzz areas in chemoinformatics ... Supports distributed science data, people, computers ... with access to journal articles: we will assume open ...
Current buzz areas in chemoinformatics ... Supports distributed science data, people, computers ... with access to journal articles: we will assume open ...
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Database Publishing at Nature PowerPoint PPT Presentation
Database Publishing at Nature - Publishing collaborations: Making databases more like journals ... Tagging and social bookmarking: New methods of annotation and navigation ...
Publishing collaborations: Making databases more like journals ... Tagging and social bookmarking: New methods of annotation and navigation ...
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XML und Datenbanken - Einf PowerPoint PPT Presentation
XML und Datenbanken - Einf - ... bung: XML-Syntax, DTD am Rechner, Raum 113 XML-Prozessoren, XPath, XQuery bung: XPath, XQuery am ... Level 3 XPointer XLink 1997 1998 XQL XML-QL XML DOM ...
... bung: XML-Syntax, DTD am Rechner, Raum 113 XML-Prozessoren, XPath, XQuery bung: XPath, XQuery am ... Level 3 XPointer XLink 1997 1998 XQL XML-QL XML DOM ...
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Using DAML format for representation and integration of complex gene networks: implications in novel drug discovery PowerPoint PPT Presentation
Using DAML format for representation and integration of complex gene networks: implications in novel drug discovery - ... eXtensible Markup Language (XML) is becoming a key component in data exchange ... schemas through ontology-based models for integration of complex genetic ...
... eXtensible Markup Language (XML) is becoming a key component in data exchange ... schemas through ontology-based models for integration of complex genetic ...
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Grid of Grids Information Management Meeting PowerPoint PPT Presentation
Grid of Grids Information Management Meeting - ... Centric Core Enterprise Services in fashion compatible with GGF/OGF and Industry ... Industry. Apache Axis .NET etc. Must set standards to get interoperability ...
... Centric Core Enterprise Services in fashion compatible with GGF/OGF and Industry ... Industry. Apache Axis .NET etc. Must set standards to get interoperability ...
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Computational Systems Biology PowerPoint PPT Presentation
Computational Systems Biology - ... Biological ... Biological systems have functions that rely on a combination of ... Some biological processes take place within milliseconds while others may ...
... Biological ... Biological systems have functions that rely on a combination of ... Some biological processes take place within milliseconds while others may ...
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Networks and Pathways I PowerPoint PPT Presentation
Networks and Pathways I - The Problem of Choice Too Many Databases. Data Exchange Formats ... http://cbio.mskcc.org/prl ... Ongoing wishful thinking about latest new technology. ...
The Problem of Choice Too Many Databases. Data Exchange Formats ... http://cbio.mskcc.org/prl ... Ongoing wishful thinking about latest new technology. ...
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Bioinformatics%20in%20the%2090 PowerPoint PPT Presentation
Bioinformatics%20in%20the%2090 - The protein-protein interaction map of Helicobacter pylori ... 3rd Meeting Satellite Meeting of ISMB 2001, Copenhagen - Focus on ontologies ...
The protein-protein interaction map of Helicobacter pylori ... 3rd Meeting Satellite Meeting of ISMB 2001, Copenhagen - Focus on ontologies ...
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Course Objectives PowerPoint PPT Presentation
Course Objectives - To learn about computational and informatics projects related to biology, ... Shankar Subramaniam, Professor of Bioengineering and Chemistry at UCSD : ...
To learn about computational and informatics projects related to biology, ... Shankar Subramaniam, Professor of Bioengineering and Chemistry at UCSD : ...
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Abschlussvortrag zur Diplomarbeit von Frank Bergmann PowerPoint PPT Presentation
Abschlussvortrag zur Diplomarbeit von Frank Bergmann - Abschlussvortrag zur Diplomarbeit von Frank Bergmann
Abschlussvortrag zur Diplomarbeit von Frank Bergmann
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Dr' Eduardo Mendoza PowerPoint PPT Presentation
Dr' Eduardo Mendoza - Most of the images are 're-used' from presentations at the last (May 03) ... StochSim (Morton-Firth/Bray, Cambridge U) Virtual Cell (Schaff, U Connecticut) ...
Most of the images are 're-used' from presentations at the last (May 03) ... StochSim (Morton-Firth/Bray, Cambridge U) Virtual Cell (Schaff, U Connecticut) ...
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