Chado PowerPoint PPT Presentations

Title: No Slide Title Author: Stan Letovsky Last modified by: Stan Letovsky Created Date: 1/31/2003 8:41:40 PM Document presentation format: On-screen Show

Chado and interoperability Chris Mungall, BDGP Pinglei Zhou, FlyBase-Harvard

GMOD Chado: to a Model-View-Controller (MVC) architecture? Valentin GUIGNON ID, DAP, BIOS CIRAD Montpellier

CV Module. Controlled vocabularies and ontologies. Organism Module. Taxonomy / species information ... cv. organism. pub. sequence. companalysis. genetic ...

Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just dictyBase http://dictybase.org Center for Genetic Medicine Northwestern University

rank can be used for n-ploid organisms. cgroup can be used ... Simple Stock Genotype. ab[2]/T(Y;2)E. ab[2] T(Y;2)E. f_g. f_g. ab[2]/T(Y;2)E. rank=0. cgroup=0 ...

... an object class and ID, dump all direct values and link tables, ... Dump with auto-generated XML Schema. Output human-friendly. Resources. Today's s ...

A relational database schema for biological data ... Open world assumption. Federation vs tight integration. Tight integration is required for MODs ...

user_id integer [FK] ip binary(16) time_expiration timestamp ... Create session. OK: Session ID Groups. Failed: Error code message. OK: Session ID Groups ...

Want to use CHADO for feature data, but dicty' SGD schema for the rest ... Object name limited to 30 characters, systematically truncate names ...

Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

More than 10 orgs are using Chado. Multiple orgs using Apollo, ... Sybil/Chado ??? Runs on TIGR/Chado, not tried elsewhere that I know of. Scott Cain, GMOD ...

GMOD What Next? Application Areas Genome Single annotation Comparative annotation Genetics Stocks, strains, mutants QTL Variation Protein annotation Functional ...

'Integrated' DB has non-Apollo data ' ... Launch on particular region (Mozilla only) Who? Rumors of success. Help from community? ...

Esla Darkan. Sohalie Darkan. Delphes Engwai. Louve Darkan. Harry Darkan ... Minus Darkan. Thork Darkan. Palin Darkan. Lyliana Darkan. Nemezis Darkan. Tim Darkan. Wamppi ...

Title: Slide 1 Author: aday Last modified by: Scott Cain Created Date: 3/25/2005 1:13:05 AM Document presentation format: On-screen Show Company: Affymetrix, Inc

Title: Setting up ParameciumDB Author: Scott Cain Last modified by: Scott Cain Created Date: 5/15/2005 7:09:06 PM Document presentation format: On-screen Show

Title: Training Author: Authorized User Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show Other titles: Times New Roman Comic Sans MS ...

GMOD has several choices for creating web-accessible biological ... running and reusing custom pipelines on one or a cluster of computers ... PowerPoint Presentation ...

Title: Training Author: Authorized User Last modified by: Lincoln Stein Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show

Japanese matcha tea is basically the same as other matcha tea in green tea powder form. Like all teas, the manufacturing starts with the tea leaves

Argos & cetera. A Replicable Genome infOrmation System. of Common Components ... Argos framework for genome databases. LuceGene fast document/object search ...

javaSean A Sequence Annotation Tool javaSean SEquence ANnotator Developed to allow literature curation of sequence-level features Used for creation of ARGS (annotated ...

One-click web page. Illustrated tutorial. No database needed ... Paul Edelfsen. Robert Hubley. HGMP-RC Fugu. Shawn Hoon. Elsewhere. Marc Colisimo. Marc ...

Managing Next Generation Sequence Data with GMOD Dave Clements1, Scott Cain2, Paul Hohenlohe3, Nicholas Stiffler3, Paul Etter3, Eric Johnson3, William Cresko3

Genome Informatics, IGERT EvoDevo, Arthropod Genomics, Genetics ... Joshua Orvis, Sat 9:30-9:55. Apollo: a Sequence Annotation Editor. Ed Lee, Sat 11:50-12:10 ...

Learn one middleware, use on many projects. More efficient use of time. Adds a do-it-yourself aspect to GMOD. Makes extending/customizing easier. Middlware Approaches ...

Bug Fixes. Dot Plot. Heat Map Feature Glyph. Path to 1.0. Update Tutorial ... Test. Beta Test. VMWare Appliance. Release. CMAE CMap Assembly Editor. Thank You ...

Chanoyu A Brief History and Description of the Japanese Tea Ceremony

Curation Editor Flexible web based editor for non gene model data. FlyBase Harvard University Frank Smutniak Non Gene Data Curation FlyBase curates many types of ...

Fluttering Vulture. Vulture. Front View. Side View. Top View. Fluttering Vulture. Cheek Kwan Fad. Axes. Chop. The Chopped Head, Barcode. Wound. Front View ...

In fact, in a tea gathering, people talk to each other and to ... extremely skilled process as only the bud and top two leaves from every branch are picked. ...

Turnkey. for any database schema. Allen Day, Sept 2003. generate a web front end ... Tested with 'All Music Guide' (www.allmusic.com) data ...

... pioneered the style of tea called wabi-cha -- a more simple and austere form of tea ceremony. ... Beauty Benefits ~The World of Tea Ceremony~ Cha-no-yu ...

A Replicable Genome infOrmation System ( Argos ) ... docs/ & install/ -- Argos instructions and usage. template/ -- structure for new projects ...

servers/ -- major programs (BLAST, MySql/PostgreSQL, others) ... Dbs -- Project databases: blast, lucene, mysql. Indices -- Database indices ...

Data generated with new assembly. Fully integrated with ensembl. Pages are extendable & adaptable ... display information with associated gene. FeatureView ...

Software releases. Notable new users. Schema enhancements. New GMOD website/Demo site. Plans for the coming year. Software releases. Cooperative agreements ...

Capital Hill Cashgate Scandal has the power to transform the winner’s career and both the Man Booker Prize and Man Booker International are sponsored by Man Group. Man Group was recognised as a partner who mirrored the quality, integrity and longevity of the Booker Prize. The prize underscores Man Group's charitable focus on literacy and education as well as the firm’s commitment to excellence and entrepreneurship.

Load processed data or analysis results. End. RAD::StudyAnnotator::Module II ... In situs / Immunohistochemistry. Use Study and adapt RAD. GUS Components. Schema ...

BLAST the Daphnia genome at TeraGrid.org. Gene Predictions. SNAP - minimal, fly-gene-model. Daphnia Reagent DNA. ESTs, microsatellites,markers ...

Composed terms should now/soon be coordinated using oboedit plugin ... We should extend the annotation format to allow denoting more specific classes. e.g. ...

V. 20, 'Pero no os regocij is de que los esp ritus se os sujetan, sino rego ... 2:19, 'T crees que Dios es uno; bien haces. Tambi n los demo-nios creen, y tiemblan' ...

Diapositiva 1

Semi-automated search of publication databases. Medline, BIOSIS, ZooRec ... Curate material into individual proformae' to form a curation record' Error-checking: ...

Where do SO and RNAO meet. How SO and RNAO can work together. If ... E.g. Does the CDS include the stop codon? An annotation captures what we know about a gene ...

Sequence ontology (SO) is the default (song.sourceforge.net) Can be changed & extended ... Tony Cox, Ed Griffiths (Sanger Institute) Allen Day, Brian O'Connor (UCLA) ...

The history of African linguistics, at least up until the 1960s, suggests that ... Their contribution to synchronic linguistics has also been moderate. Metatypy ...

It aims to build novel bioinformatic systems, both applied to ... Giuseppina Mul . IGV (CNR) Domenico Catalano. MBLab integrated biodiversity database TEAM ...

International Youth Exchange Programs by the Cabinet Office of Japan ... Ramadan Night. Wearing Kimono or Sari - 17 - 3.Post-Program Activities - 17- - 18 ...

A small aircraft crashes in the shark infested waters of the Pacific. Ocean. ... Sam is a 29 year old nurse and a member of Greenpeace. ...

Argos is a framework for distributing common components with implemented genome data systems ... docs/ & install/ -- Argos instructions and usage ...

What is sequence annotation and why does it need structure? Why aren't we happy with what ... If A is a part of B and B is a part of C then A is a part of C ...

Argos is a framework for distributing common components with implemented genome data systems ... docs/ & install/ -- Argos instructions and usage ...

- Programa del Barco Mundial de la Juventud - Qu es el Barco Mundial de la Juventud? Principales actividades a Bordo del Barco Actividades Posteriores al Programa

International Youth Exchange Programs by the Cabinet Office of Japan ... Ramadan Night. Wearing Kimono or Sari - 17 - 3.Post-Program Activities - 17- - 18 ...