26 Cse182 PPTs View free & download

CSE182-L6 - CSE182-L6 Protein structure basics Protein sequencing

CSE182-L6 Protein structure basics Protein sequencing

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CSE182-L7 - CSE182-L7 Protein Sequence Analysis Patterns (regular expressions) Profiles HMM Gene Finding

CSE182-L7 Protein Sequence Analysis Patterns (regular expressions) Profiles HMM Gene Finding

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CSE182-L18 - CSE182-L18 Population Genetics

CSE182-L18 Population Genetics

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CSE182-L13 - CSE182-L13 Mass Spectrometry Quantitation and other applications

CSE182-L13 Mass Spectrometry Quantitation and other applications

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CSE182-L17 - CSE182-L17 Clustering Population Genetics: Basics

CSE182-L17 Clustering Population Genetics: Basics

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CSE182-L11 - CSE182-L11 Protein sequencing and Mass Spectrometry

CSE182-L11 Protein sequencing and Mass Spectrometry

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CSE182-L7 - ... signal where translation starts, usually at the ATG (M) codon. ... Each triplet is translated into a unique amino-acid until the STOP codon is encountered. ...

... signal where translation starts, usually at the ATG (M) codon. ... Each triplet is translated into a unique amino-acid until the STOP codon is encountered. ...

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CSE182-L4:%20Scoring%20matrices,%20Dictionary%20Matching PowerPoint PPT Presentation

CSE182-L4:%20Scoring%20matrices,%20Dictionary%20Matching - Title: L3: Blast: Keyword match basics Author: Vineet Bafna Last modified by: Vineet Bafna Created Date: 10/4/2005 8:32:21 AM Document presentation format

Title: L3: Blast: Keyword match basics Author: Vineet Bafna Last modified by: Vineet Bafna Created Date: 10/4/2005 8:32:21 AM Document presentation format

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CSE182-L5: Scoring matrices Dictionary Matching PowerPoint PPT Presentation

CSE182-L5: Scoring matrices Dictionary Matching - Trivial algorithm O(nm) time. Pre-processing O(m), Search O(n) time. Dictionary matching ... or for their enzymatic activity are conserved in both structure ...

Trivial algorithm O(nm) time. Pre-processing O(m), Search O(n) time. Dictionary matching ... or for their enzymatic activity are conserved in both structure ...

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CSE182-L4: Keyword matching PowerPoint PPT Presentation

CSE182-L4: Keyword matching - Q: What is the score of the best alignment of the two strings s and t? ... Concatenate all of the database sequences to form one giant sequence. ...

Q: What is the score of the best alignment of the two strings s and t? ... Concatenate all of the database sequences to form one giant sequence. ...

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CSE182-L4: Scoring matrices, Dictionary Matching PowerPoint PPT Presentation

CSE182-L4: Scoring matrices, Dictionary Matching - You can subscribe ... Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, ...

You can subscribe ... Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, ...

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CSE182-L5:%20Position%20specific%20scoring%20matrices%20Regular%20Expression%20Matching%20Protein%20Domains PowerPoint PPT Presentation

CSE182-L5:%20Position%20specific%20scoring%20matrices%20Regular%20Expression%20Matching%20Protein%20Domains - Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, signature or fingerprint. ...

Sometimes, homology (evolutionary similarity) exists at very low levels of ... types, which is variously known as a pattern, motif, signature or fingerprint. ...

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CSE182-L4: Scoring matrices, Dictionary Matching - Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...

Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...

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CSE182-L9 - This is violated by many states of the gene structure HMM. ... Measuring the lengths using electrophoresis allows us to get the position of each T ...

This is violated by many states of the gene structure HMM. ... Measuring the lengths using electrophoresis allows us to get the position of each T ...

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CSE182-L6 - Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...

Profile based scores are a natural way to handle this. ... (Basic protease inhibitor) (BPI) (BPTI) (Aprotinin) - Bos taurus (Bovine) ...

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CSE182-L12 - Twinscan: Combines comparative and de novo approach. Databases ... De novo Gene prediction: Summary. Various signals distinguish coding regions from non-coding ...

Twinscan: Combines comparative and de novo approach. Databases ... De novo Gene prediction: Summary. Various signals distinguish coding regions from non-coding ...

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CSE182-L10 - Acceptor. Donor splice site. Transcription start. Translation start. Coding versus Non-coding ... GT is a Donor signal, and AG is the acceptor signal. GT. AG. PWMs ...

Acceptor. Donor splice site. Transcription start. Translation start. Coding versus Non-coding ... GT is a Donor signal, and AG is the acceptor signal. GT. AG. PWMs ...

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CSE182-L10 - Keep the 'high-scoring' ones as evidence of true overlap. What is the problem? ... k-mer based overlap (Piegeonhole principle again) Consider a 25bp sequence. ...

Keep the 'high-scoring' ones as evidence of true overlap. What is the problem? ... k-mer based overlap (Piegeonhole principle again) Consider a 25bp sequence. ...

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CSE182-L12 - CSE182L12

CSE182L12

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CSE182-L10 - Pr[x,pi=k]=F(i,k) B(i,k) Application of HMMs. How do we modify this to handle indels? ... HMMs are a natural technique for modeling many biological domains. ...

Pr[x,pi=k]=F(i,k) B(i,k) Application of HMMs. How do we modify this to handle indels? ... HMMs are a natural technique for modeling many biological domains. ...

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CSE 182: Biological Data Analysis - CSE 182: Biological Data Analysis

CSE 182: Biological Data Analysis

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CSE/Beng/BIMM 182: Biological Data Analysis PowerPoint PPT Presentation

CSE/Beng/BIMM 182: Biological Data Analysis - Perl/Python are appropriate ... of information to different parts of cell Provide templates to synthesize into protein The molecules of Life and Bioinformatics ...

Perl/Python are appropriate ... of information to different parts of cell Provide templates to synthesize into protein The molecules of Life and Bioinformatics ...

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CSE182L13 - ... had already been given in the context of mapping, by Lander and Waterman. Lander Waterman Statistics ... Lander Waterman strikes again! ...

... had already been given in the context of mapping, by Lander and Waterman. Lander Waterman Statistics ... Lander Waterman strikes again! ...

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CSE182L13 - Upon phosphorylation, the b-, and y-ions shift in a characteristic fashion. ... A simple trick can let us predict the modification sites? Consider the peptide ASTYER. ...

Upon phosphorylation, the b-, and y-ions shift in a characteristic fashion. ... A simple trick can let us predict the modification sites? Consider the peptide ASTYER. ...

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CSE182L13 - Upon phosphorylation, the b-, and y-ions shift in a characteristic fashion. ... Can we predict the sites of the modification? A simple trick can let us predict ...

Upon phosphorylation, the b-, and y-ions shift in a characteristic fashion. ... Can we predict the sites of the modification? A simple trick can let us predict ...

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CSE182L8 - Putative Prefix Masses. Prefix Mass. M=401 b y. 88 87 332. 145 144 275. 147 146 273. 276 275 144 ... Each node u defines a putative prefix residue M(u) ...

Putative Prefix Masses. Prefix Mass. M=401 b y. 88 87 332. 145 144 275. 147 146 273. 276 275 144 ... Each node u defines a putative prefix residue M(u) ...

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Cse182 PowerPoint PPT Presentations