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Title: Training Author: Authorized User Last modified by: Lincoln Stein Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show
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Title: Training Author: Authorized User Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show Other titles: Times New Roman Comic Sans MS ...
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COSMIC GBrowse Visualising cancer mutations in genomic context Dave Beare dmb@sanger.ac.uk Cancer Genome Project Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK
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One-click web page. Illustrated tutorial. No database needed ... Paul Edelfsen. Robert Hubley. HGMP-RC Fugu. Shawn Hoon. Elsewhere. Marc Colisimo. Marc ...
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... and displaying annotations on genome see more and more personal genomes becoming available Price of sequencing genomes continues to drops good choice ...
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Most Web-based genome browsers are static HTML pages the entire page is ... The generic genome browser: a building block for a model organism system database. ...
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... cgi-bin/gbrowse/toxodb/' 'Mozilla/5.0 (Windows; U; Windows NT ... Download. DataSource. SiteInfo. Phs. Matrix of Transition Probabilities for trichdb. e ...
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UoN-NTU Graduate School Course on Post-genomics and bio ... UCSC ARCHAEAL : http://archaea.ucsc.edu/ MAKE YOUR OWN. GBROWSE : http://www.gmod.org/?q=node/71 ...
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GMOD Chado: to a Model-View-Controller (MVC) architecture? Valentin GUIGNON ID, DAP, BIOS CIRAD Montpellier
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Genomes, maps, stocks, phenotypes, anatomies, pathways, ... Worm, fly, yeast, mouse, arabidopsis, rat. Funded by NIH as of June 2002. http://www.gmod.org ...
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Title: Setting up ParameciumDB Author: Scott Cain Last modified by: Scott Cain Created Date: 5/15/2005 7:09:06 PM Document presentation format: On-screen Show
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in Silico Primer Design and Simulation for Targeted High Throughput Sequencing
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Title: Slide 1 Author: aday Last modified by: Scott Cain Created Date: 3/25/2005 1:13:05 AM Document presentation format: On-screen Show Company: Affymetrix, Inc
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GMOD has several choices for creating web-accessible biological ... running and reusing custom pipelines on one or a cluster of computers ... PowerPoint Presentation ...
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Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just dictyBase http://dictybase.org Center for Genetic Medicine Northwestern University
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Managing Next Generation Sequence Data with GMOD Dave Clements1, Scott Cain2, Paul Hohenlohe3, Nicholas Stiffler3, Paul Etter3, Eric Johnson3, William Cresko3
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Many bug genes are hard to find - Daphnia's many tandems were lost for a bit ... nasonia : Wasp gene predictions, homology, EST ...
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Genome Informatics, IGERT EvoDevo, Arthropod Genomics, Genetics ... Joshua Orvis, Sat 9:30-9:55. Apollo: a Sequence Annotation Editor. Ed Lee, Sat 11:50-12:10 ...
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Protein (domain, PTM, literature ... Sequence alignment data Summaries PowerPoint Presentation EMAP data Protein-protein interaction data PowerPoint ...
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user_id integer [FK] ip binary(16) time_expiration timestamp ... Create session. OK: Session ID Groups. Failed: Error code message. OK: Session ID Groups ...
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Zolan Lab. Jonathan Nowacki. School of Informatics. Master of Science in Bioinformatics ... Zolan Lab. Microsatellite Results. Microsatellites were found ...
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Provide a database of publicly available QTL in cattle. ... Addition of SNP/haplotype database and integration with genome browser and QTL viewer. ...
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Draft sequence of the maize genome. All BACs: shotgun & pre-finishing ... (Hind III, EcoR I, MboI ; 27X genome coverage (~150kb inserts) BAC End. Sequencing ~800,000 ...
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Assessing the need for sequence-based normalization in tiling microarray experiments. ... or other sequence adjustments of expression, unless gene structure ...
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A Replicable Genome infOrmation System ( Argos ) ... docs/ & install/ -- Argos instructions and usage. template/ -- structure for new projects ...
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BLAST the Daphnia genome at TeraGrid.org. Gene Predictions. SNAP - minimal, fly-gene-model. Daphnia Reagent DNA. ESTs, microsatellites,markers ...
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More than 10 orgs are using Chado. Multiple orgs using Apollo, ... Sybil/Chado ??? Runs on TIGR/Chado, not tried elsewhere that I know of. Scott Cain, GMOD ...
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Olivier Garsmeur Ga tan Droc Franc-Christophe Baurens Dominique This St phanie Sidib -Bocs Annotation de s quences g nomiques: g nes * Before to annotate the ...
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servers/ -- major programs (BLAST, MySql/PostgreSQL, others) ... Dbs -- Project databases: blast, lucene, mysql. Indices -- Database indices ...
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Chado and interoperability Chris Mungall, BDGP Pinglei Zhou, FlyBase-Harvard
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SAM (Sequence Alignment and Modeling) tells us that sequences are related, but ... I'd like to thank Dr. Hardies and Mandy for letting me intrude in their lab, and ...
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Software releases. Notable new users. Schema enhancements. New GMOD website/Demo site. Plans for the coming year. Software releases. Cooperative agreements ...
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University of British Columbia. iCAPTUR4E Centre, St. ... Define web service interfaces using these data-types. Register these interfaces in a 'yellow pages' ...
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Want to use CHADO for feature data, but dicty' SGD schema for the rest ... Object name limited to 30 characters, systematically truncate names ...
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Turnkey. for any database schema. Allen Day, Sept 2003. generate a web front end ... Tested with 'All Music Guide' (www.allmusic.com) data ...
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Tutorial for the Genome Browser for Soybean: by David A. Lightfoot. Center for Excellence in ... Ideotype of MLG G Chromosome 18. 6.66 microns euchromatin ...
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Genotyping Workflow Identified candidate genes and provided targeted/tagging SNPs from the PAAR group PIs. Current genotyping methods available in our lab:
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Write a custom XML-to-XHTML parser (probably faster to implement but less flexible to maintain) ... Kid Loco - DJ Kicks. Ulrich Schnauss - A Strangely Isolated ...
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Based on MySQL and Perl. The configuration file allows us to ... MySQL and Perl. Consists of modules for data, logic (howmaps are layed out), and presentation. ...
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Use that FASTA to do a BLAST search against the Snapdragon (Antirrhinum) database. Extract the 'hit' Antirrhinum sequence accession numbers from the selected Blast ...
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(Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...
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Due to some uncertainties suspected in the 1.01 assembly in this region of Gm chr 5 ... we have represented an intergenic region of 1.7 kb between genes 10 and 11 ...
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Sequence ontology (SO) is the default (song.sourceforge.net) Can be changed & extended ... Tony Cox, Ed Griffiths (Sanger Institute) Allen Day, Brian O'Connor (UCLA) ...
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Argos & cetera. A Replicable Genome infOrmation System. of Common Components ... Argos framework for genome databases. LuceGene fast document/object search ...
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Pathways are just one of the types of data we provide, and they account for a ... Found that it was easier to make progress by making a focused 'project' out of ...
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Learn one middleware, use on many projects. More efficient use of time. Adds a do-it-yourself aspect to GMOD. Makes extending/customizing easier. Middlware Approaches ...
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The Apollo Genome Annotation and Curation Tool ... Berkeley Drosophila Genome Project. Stephen Searle, Michele Clamp ... Apollo lets human experts (biologists) ...
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Of interest to biologists (test models) chemists (atomic control ... 57 putative RBSs encoding 60 proteins. 51 regulatory elements. From D. Endy. Previous Page ...
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Model Organism Bring Your own Database Interface Conference, ... Blue-Jay (P Gordon) and RGD prototype (S Twigger) Menu-style clients. MOBY Graphs (M Senger) ...
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Title: No Slide Title Author: Stan Letovsky Last modified by: Stan Letovsky Created Date: 1/31/2003 8:41:40 PM Document presentation format: On-screen Show
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Flanders Interuniversity for Biotechnology (VIB), Gent, Belgium ... Select two organisms and find the putative othologs between them. www.eu-plant-genome.net ...
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Argos is a framework for distributing common components with implemented genome data systems ... docs/ & install/ -- Argos instructions and usage ...
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PROBLEM in bioinformatics: enabling use of large biology data analyses on shared ... RESULTS: New insect and crustacean genomes have been analyzed on TeraGrid to ...
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Gene Prediction approaches Talk By Joy Scaria The value of genome sequences lies in their annotation Annotation Characterizing genomic features using ...
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Illumina Genome Analyzer IIx ... Solexa/Illumina deep sequencing technology and five different microarray ... Illumina DGE: 2.4 million sequence tags per sample, ...
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quick genome scan to find putative gene containing regions ... built with Fitch/Kitsch. Odds and bits. Mapping of Pdb - Uniprot - dmel proteins ...
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