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Respective contributions of MIAME, GeneOntology and UMLS for transcriptome analysis Fouzia Moussouni, Anita Burgun, Franck Le Duff, Emilie Gu rin, Olivier Lor al
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http://www.geneontology.org/index.shtml An Introduction to the Gene Ontology (GO) The Gene Ontology project provides a controlled vocabulary to describe gene and gene ...
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http://www.geneontology.org/GO.teaching.resources.shtml ... regulation of gluconeogenesis. Ontology Structure. Terms are linked by two relationships ...
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Gene Ontology ... Gene Ontology. Evidence codes http://www.geneontology.org/GO.evidence.shtml ... Databases using Gene Ontology. NetAffx (Affymetrix probe annotations) ...
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GeneOntology standard and ontology to describe gene function and regulation ... BioPAX ontology and format in OWL (XML) Ontology built using GKB Editor and Prot g ...
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Use Case 1: Search for GeneOntology based on a Gene whose symbol is 'NAT2' ... run 'java org.apache.axis.wsdl.WSDL2Java cacore30.wsdl' ...
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Creating an RDFS based ontology with KAON. Export ontology for ... http://www.geneontology.org/email-go/go-arc/go-2003/att-1944/01-EvalOntol.p df. FAO of the UN ...
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AVH and DAG : Attribute Value Hierarchy and Directed Acyclic Graph are ordering ... Real world example: GeneOntology (DAG), SCOP (AVH) ...
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Importing GO terms from UniProt to a PGDB Markus Krummenacker Bioinformatics Research Group SRI International kr@ai.sri.com GO in EcoCyc Introduction GO (http ...
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Title: Biology-Driven Clustering of Microarray Data Last modified by: Kevin Coombes Created Date: 9/30/1996 6:28:10 PM Document presentation format
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Getting GO: how to get GO for functional modeling
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Canadian Bioinformatics Workshops www.bioinformatics.ca
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Canadian Bioinformatics Workshops www.bioinformatics.ca
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Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader
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BUT there is NO ontology that says learning and/or memory can influence Alzheimer s disease Degradation of ubiquitin cycle can cause extra long/short half-life of ...
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High throughput functional annotation and analysis with the Blast2GO suite Ana Conesa Bioinformatics Department Centro de Investigaciones Pr nicpe Felipe
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Yeast Dataset Analysis Hongli Li 91.580 Final Project Computer Science Department UMASS Lowell
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Course coordinator carol.bult@jax.org The Jackson Laboratory Keith Hutchison, ... Primary focus: Transcriptional profiling using microarrays and high-throughput ...
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Laboratory of Parasitic Diseases, NIAID MINING FOR MEANING: Data mining & Knowledge extraction MINING FOR MEANING: Data mining & Knowledge extraction FUNCTIONAL ...
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... Biology ... Molecular Biology of The Cell) present. first mono-cellular organism. 100 ... from original articles by hand. We refer review articles of Cell. ...
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... Unified Medical Language System (UMLS) Gene World Biomedical World Molecular Function = elemental activity/task the tasks performed by individual gene products; ...
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Working in Real Time: Building Ontologies While Annotating the Mouse from Genotype to Phenotype Judith Blake, Ph.D. Mouse Genome Informatics The Jackson Laboratory
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BMC Bioinformatics 8(1): 392 [Epub ahead of print] Applications: For functional enrichment For candidate gene prioritization Why another gene prioritization method?
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Title: Tecniche post-genomiche Author: dino Last modified by: mfasano Created Date: 3/13/2005 8:49:18 PM Document presentation format: Presentazione su schermo (4:3)
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Gene expression profiling of retinoic acid treated nur77 / and -/- thymocytes ... 460 retinoid regulated transcripts. One BioCarta pathway affected: il2rb -2.7. 2.4 ...
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Include boutique databases? Schema Integration. How do schemas map ... Boutique databases are small, specialty databases that may add a modicum of knowledge. ...
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Tutorial 7 Gene expression analysis * * * * * Edit the input matrix: Transpose,Normalize,Randomize * Hierarchical clustering K-means clustering In the input matrix ...
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KEGG - http://www.genome.jp/kegg/kegg2.html. BioCarta - http://www. ... http://www.pdg.cnb.uam.es/UniPub/iHOP/ Thank you! Vered Caspi. http://bioinfo.bgu.ac.il ...
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ISO - inferred from sequence orthology. ISM - inferred from sequence model ... public orthology prediction tool(s) 1:1 orthologs. transfer GO annotation to your ...
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Evidence networks for the analysis of biological systems. Rainer Breitling ... 3 fish (fugu, puffer, zebrafish) chicken, cow, dog, mouse, rat, chimp. human ...
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Bregje Wertheim at the Centre for Evolutionary Genomics, Department of Biology, ... InterPro:IPR000015 Fimbrial biogenesis outer membrane usher protein GO: ...
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MIS 3150 Data and Info Mgmt: XML Arijit Sengupta
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Resources of Biomolecular Data: Sequences, Structures and Functionality PhD course #27803 Nikolaj Blom Center for Biological Sequence Analysis BioCentrum-DTU
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melanoma.loximvi. melanoma.uacc577. melanoma.m14. melanoma.skmel2. melanoma.skmel5. melanoma.malme3m. melanoma.skmel28. melanoma.uacc62. nsclc.h322 ...
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Investigating Genomes with Ensembl
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This is hampered further by the wide variations in terminology that may be ... component of a cell, but with the proviso that it is part of some larger object; ...
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I DATABASE Elenco: http://www.ncbi.nlm.nih.gov/About/tools/restable_mol.html Statistiche (Vedere i vari database): http://www.ncbi.nlm.nih.gov/About/tools/restable ...
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Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format
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Scoring Matrices Based on Conserved Amino Acid Substitution ... Likelihood of One Amino Acid Mutated into Another Over Evolutionary Time ...
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Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html Genomics, Bioinformatics & Medicine http://biochem158.stanford.edu/ Doug Brutlag
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From genes to pathways; or why we do data mining to couple ... Steal and smartly adapt a transcriptomics tool: GenMapp/Mappfinder. I will show some examples ...
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Ela Hunt. John Wilson. Vangelis Pafilis. Inga Tulloch. http://xtect.cis.strath.ac.uk ... Hunt, Wilson, Pafilis and Tulloch, Glasgow ...
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(Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...
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Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...
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Those organisms were selected because they are ... of common genes between human, fly and zebrafish that were being used as a test ...
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GO represents concepts used to classify specific parts of our biological ... now distributed by Rand McNally & Co. 'Tree' Relationships. Ontology Relationships ...
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What criteria should we use to collect and prioritize genes for the reference genomes? ... Special display in AmiGO. Provide annotations in a separate file ...
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Molecular function: tasks performed by gene product ... broad biological goals accomplished by ordered assemblies of molecular functions ...
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Where the cat hunts. BiGCaT Bioinformatics, bridge between two universities ... Steal and smartly adapt a transcriptomics tool: GenMapp/Mappfinder ...
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... Dwight et al. 2002 Meloidogyne incognita: McCarter et al. 2003 The combinatorial nightmare Process Body part Regulation Negative or Positive Induction 2 * 2 * ...
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Title: PowerPoint Presentation Author: Suzanna Lewis Last modified by: Suzanna Lewis Created Date: 9/7/2005 1:23:00 PM Document presentation format
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Collaboration with Univ. of Maryland radiologists. Current Research at ND CSE II ... NSF Biocomplexity grant to model chicken limb development ...
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The Gene Ontology (GO) project is a collaborative effort to address the need for ... (S.G.Lee, 2004) 2/3/2005. GO parent-child relationship ' ...
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Aims of GOA project: To associate GO terms with All proteins in: - SWISS-PROT & TrEMBL - InterPro ... Daniel Barrell GOA File updates. David Binns QuickGO ...
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Italy generated brilliant scientists, but lagged in ... Damian Gessler, Wednesday 4:15 pm, Canyon IV. http://www.biomoby.org. Moving Towards Nationhood ...
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Title: PowerPoint Presentation Last modified by: Alan Jovic Created Date: 1/1/1601 12:00:00 AM Document presentation format: On-screen Show Other titles
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