Gff3 PowerPoint PPT Presentations
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Sharing Genomic Data and Annotations using GFF3 format Dina Sulakhe and Natalia Maltsev Bioinformatics Group MCS, Argonne National Laboratory Computation Institute
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Title: Training Author: Authorized User Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show Other titles: Times New Roman Comic Sans MS ...
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Title: Setting up ParameciumDB Author: Scott Cain Last modified by: Scott Cain Created Date: 5/15/2005 7:09:06 PM Document presentation format: On-screen Show
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One-click web page. Illustrated tutorial. No database needed ... Paul Edelfsen. Robert Hubley. HGMP-RC Fugu. Shawn Hoon. Elsewhere. Marc Colisimo. Marc ...
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Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just dictyBase http://dictybase.org Center for Genetic Medicine Northwestern University
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Genome Bioinformatics. Tyler Alioto. Center for Genomic Regulation Barcelona, Spain ... Expressed Sequence (cDNA) or protein sequence available? Yes Spliced alignment ...
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Where do SO and RNAO meet. How SO and RNAO can work together. If ... E.g. Does the CDS include the stop codon? An annotation captures what we know about a gene ...
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NCBI National Center for Biotechnology Information. NCBI Data Mining Tools: ... Sequin-style 5-Column Feature Table format. Newick-format phylogenetic trees ...
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Want to use CHADO for feature data, but dicty' SGD schema for the rest ... Object name limited to 30 characters, systematically truncate names ...
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RNA-Seq and Transcriptome Analysis Jessica R. Kirkpatrick, M.S. Research & Instructional Specialist in Life Sciences High Performance Biological Computing (HPCBio)
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More than 10 orgs are using Chado. Multiple orgs using Apollo, ... Sybil/Chado ??? Runs on TIGR/Chado, not tried elsewhere that I know of. Scott Cain, GMOD ...
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Learn one middleware, use on many projects. More efficient use of time. Adds a do-it-yourself aspect to GMOD. Makes extending/customizing easier. Middlware Approaches ...
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database of alternative splice events and the resultant isoform splice patterns ... Thirdly, for grant purposes, ATD - Alternative transcript diversity database, ...
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Those organisms were selected because they are ... of common genes between human, fly and zebrafish that were being used as a test ...
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Argos & cetera. A Replicable Genome infOrmation System. of Common Components ... Argos framework for genome databases. LuceGene fast document/object search ...
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One of a set of BRC's funded to support large-scale sequencing projects. VectorBase ... APOLLO* CEGG. VectorBase. VB DAS use. e! DAS client. Permanent DAS servers: ...
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WPs receive from ATF the required Grid functionalities to implement. In the meantime WPs are required to work on the evaluation of current ...
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What is sequence annotation and why does it need structure? Why aren't we happy with what ... If A is a part of B and B is a part of C then A is a part of C ...
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... Oliver Fiehn, Jennifer Fostel, Peter Ghazal, Graeme Grimes, ... Norman Morrison (NEBC) Jeremy Selengut (TIGR) Peter Sterk (EBI) Tatiana Tatusova (NCBI) ...
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Sequence ontology (SO) is the default (song.sourceforge.net) Can be changed & extended ... Tony Cox, Ed Griffiths (Sanger Institute) Allen Day, Brian O'Connor (UCLA) ...
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CV Module. Controlled vocabularies and ontologies. Organism Module. Taxonomy / species information ... cv. organism. pub. sequence. companalysis. genetic ...
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