Gmod PowerPoint PPT Presentations

GMOD What Next? Application Areas Genome Single annotation Comparative annotation Genetics Stocks, strains, mutants QTL Variation Protein annotation Functional ...

GMOD Chado: to a Model-View-Controller (MVC) architecture? Valentin GUIGNON ID, DAP, BIOS CIRAD Montpellier

Genome Informatics, IGERT EvoDevo, Arthropod Genomics, Genetics ... Joshua Orvis, Sat 9:30-9:55. Apollo: a Sequence Annotation Editor. Ed Lee, Sat 11:50-12:10 ...

Porting CHADO and GMOD Tools to Oracle and Integration with dictyBase Eric Just dictyBase http://dictybase.org Center for Genetic Medicine Northwestern University

Software releases. Notable new users. Schema enhancements. New GMOD website/Demo site. Plans for the coming year. Software releases. Cooperative agreements ...

Stock Center Module. Literature Module. Federated Toolkit. Visualize ... http://mydb/stock.cgi. http://mydb/lit.cgi. How do we Federate? Common Data Model & API ...

Learn one middleware, use on many projects. More efficient use of time. Adds a do-it-yourself aspect to GMOD. Makes extending/customizing easier. Middlware Approaches ...

Managing Next Generation Sequence Data with GMOD Dave Clements1, Scott Cain2, Paul Hohenlohe3, Nicholas Stiffler3, Paul Etter3, Eric Johnson3, William Cresko3

user_id integer [FK] ip binary(16) time_expiration timestamp ... Create session. OK: Session ID Groups. Failed: Error code message. OK: Session ID Groups ...

More than 10 orgs are using Chado. Multiple orgs using Apollo, ... Sybil/Chado ??? Runs on TIGR/Chado, not tried elsewhere that I know of. Scott Cain, GMOD ...

Want to use CHADO for feature data, but dicty' SGD schema for the rest ... Object name limited to 30 characters, systematically truncate names ...

Taxonomic pruning reduces false positive pathway predictions ... variants in MetaCyc mean potentially many false positive pathway predictions ...

Most Web-based genome browsers are static HTML pages the entire page is ... The generic genome browser: a building block for a model organism system database. ...

Manual Annotation of Human Genome at Broad Institute Chinnappa Kodira April 2004 GMOD 2004, Cambridge, MA

GMOD has several choices for creating web-accessible biological ... running and reusing custom pipelines on one or a cluster of computers ... PowerPoint Presentation ...

Genomes, maps, stocks, phenotypes, anatomies, pathways, ... Worm, fly, yeast, mouse, arabidopsis, rat. Funded by NIH as of June 2002. http://www.gmod.org ...

GMOD Meeting at NESCent. Durham, ... Supports complex genetic pedigrees. Follow seed lots and even plants ... Pedigree Viewer (beta version) Terry M. Casstevens ...

Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

All s which are different then what you have in your binder ... Sequin (NCBI) PseudoCAP (SFU) GMOD (CSHL) Pegasys (UBiC) Apollo (EBI/Berkeley) Lecture 4.2 ...

... Genome Project. Stephen Searle, Michele Clamp, Vivek Iyer. Ensembl Project, Sanger Institute. GMOD Meeting, Cold Spring Harbor. May 5, 2003. What is Apollo? ...

UoN-NTU Graduate School Course on Post-genomics and bio ... UCSC ARCHAEAL : http://archaea.ucsc.edu/ MAKE YOUR OWN. GBROWSE : http://www.gmod.org/?q=node/71 ...

Title: Setting up ParameciumDB Author: Scott Cain Last modified by: Scott Cain Created Date: 5/15/2005 7:09:06 PM Document presentation format: On-screen Show

Title: Compiler Improvement of Register Usage Author: Engineering Last modified by: Ken Kennedy Created Date: 3/14/2001 2:41:47 AM Document presentation format

Another great feature of this game is that you can interact with a vibrant and vast online community. All the members of this community are real time players of the game; they share their experiences with each other. This community also serves as a good source of useful content, and the members add hundreds of unique tips, tricks, techniques as well as modes to the game.

Title: Training Author: Authorized User Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show Other titles: Times New Roman Comic Sans MS ...

Title: SOAP for Metadata Access on GRID A comparative study Author: Nuno Santos Last modified by: Ines Created Date: 4/24/2005 2:43:57 PM Document presentation format

Title: Training Author: Authorized User Last modified by: Lincoln Stein Created Date: 6/2/1995 10:16:36 PM Document presentation format: On-screen Show

Title: Slide 1 Author: aday Last modified by: Scott Cain Created Date: 3/25/2005 1:13:05 AM Document presentation format: On-screen Show Company: Affymetrix, Inc

COSMIC GBrowse Visualising cancer mutations in genomic context Dave Beare dmb@sanger.ac.uk Cancer Genome Project Wellcome Trust Sanger Institute, Hinxton, Cambridge, UK

... Run as standalone application or launch from Apollo Load/layer raw analysis results: BLAST (all flavors) sim4 GENSCAN FgenesH Coming soon: BLAT ...

... and displaying annotations on genome see more and more personal genomes becoming available Price of sequencing genomes continues to drops good choice ...

Argos & cetera. A Replicable Genome infOrmation System. of Common Components ... Argos framework for genome databases. LuceGene fast document/object search ...

worm (2) yeast. And coming soon... cat. platypus. medaka, stickleback. Hardware. Under the hood ... Put the most commonly used controls on the top of the page ...

Genetic Modification Michael Congdon BME 181 What is genetic engineering? The process of creating genetically modified (transgenic) organisms through a laboratory ...

javaSean A Sequence Annotation Tool javaSean SEquence ANnotator Developed to allow literature curation of sequence-level features Used for creation of ARGS (annotated ...

Turnkey. for any database schema. Allen Day, Sept 2003. generate a web front end ... Tested with 'All Music Guide' (www.allmusic.com) data ...

One-click web page. Illustrated tutorial. No database needed ... Paul Edelfsen. Robert Hubley. HGMP-RC Fugu. Shawn Hoon. Elsewhere. Marc Colisimo. Marc ...

Many bug genes are hard to find - Daphnia's many tandems were lost for a bit ... nasonia : Wasp gene predictions, homology, EST ...

Sanjay Chillepilla, KSU Bioinformatics Center, ... in situs. Literature. Text mining. Phenotypes. Ecotypes. RFLP. AFLP. SNP. Established genome databases ...

Se ripetiamo il ragionamento per ... eterogeneo e condizionale parziale e eterogeneo gi visto per il prim ordine Condizionale = vogliamo che gli assiomi ...

A Replicable Genome infOrmation System ( Argos ) ... docs/ & install/ -- Argos instructions and usage. template/ -- structure for new projects ...

ALIAS(p,x) contains less than entries if x is global ... Solved the modification side-effect problem and the alias side-effect problem ...

servers/ -- major programs (BLAST, MySql/PostgreSQL, others) ... Dbs -- Project databases: blast, lucene, mysql. Indices -- Database indices ...

The Genome Access Course Genome Analysis

Examples with time-dependent lower and upper boundaries. Energy ... Time-dependent curvilinear boundaries. Exploit a metric structure determined by data ...

Italy generated brilliant scientists, but lagged in ... Damian Gessler, Wednesday 4:15 pm, Canyon IV. http://www.biomoby.org. Moving Towards Nationhood ...

Generic Feature Database. Shawn Hoon. Fugu Informatics Group ... http://www.fugu-sg.org. Acknowledgements. FuguI Team. Elia Stupka. Jer-Ming Chia ...

Projeto de Banco de Dados Geogr ficos DADOS, INFORMA ES E FEN MENOS GEOGR FICOS REQUISITOS PARA MODELAGEMA DE BDG Sistema de Informa o Geogr fica

Archive data and trees (repeat old analyses with ... The case of the Harp seal. TreeBASE and GenBank have harp seals under two different names, only ITIS knows ...

BeeSpace: IGB's Flagship in Bioinformatics. Harris Lewin. Director, ... First Flagship funded at IGB (NSF BIO) One of Two Projects in Pre-Building Space ...

The Genome Access Course Genome Analysis

The Apollo Genome Annotation and Curation Tool ... Berkeley Drosophila Genome Project. Stephen Searle, Michele Clamp ... Apollo lets human experts (biologists) ...

Chado and interoperability Chris Mungall, BDGP Pinglei Zhou, FlyBase-Harvard

BLAST the Daphnia genome at TeraGrid.org. Gene Predictions. SNAP - minimal, fly-gene-model. Daphnia Reagent DNA. ESTs, microsatellites,markers ...

Community Standards and Comparative Genomics

'Integrated' DB has non-Apollo data ' ... Launch on particular region (Mozilla only) Who? Rumors of success. Help from community? ...