80 Mummer PPTs View free & download

BioPerl: MUMmer PowerPoint PPT Presentation

BioPerl: MUMmer - Goal: collect computational methods routinely used in bioinformatics ... bioinformatics toolkit for format conversion, report processing, data ...

Goal: collect computational methods routinely used in bioinformatics ... bioinformatics toolkit for format conversion, report processing, data ...

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MUMmer: fast alignment of large-scale DNA and protein sequences PowerPoint PPT Presentation

MUMmer: fast alignment of large-scale DNA and protein sequences - Use dynamic programming (Smith-Waterman) to extend MUMs. Smaller regions, so can compute quickly ... 3) Gap closing (via dynamic programming, Smith-Waterman) ...

Use dynamic programming (Smith-Waterman) to extend MUMs. Smaller regions, so can compute quickly ... 3) Gap closing (via dynamic programming, Smith-Waterman) ...

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Alignment of whole genomes using suffix trees PowerPoint PPT Presentation

Alignment of whole genomes using suffix trees - Alignment of whole genomes using suffix trees Mahshid Shakiba Nov 17, 2004 IFT 6299, University of Montreal Outline Motivation MUMmer Algorithms Observations MUMmer 2 ...

Alignment of whole genomes using suffix trees Mahshid Shakiba Nov 17, 2004 IFT 6299, University of Montreal Outline Motivation MUMmer Algorithms Observations MUMmer 2 ...

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Whole Genome Alignment PowerPoint PPT Presentation

Whole Genome Alignment - Usage Examples. WGA example with nucmer. Yersina pestis CO92 vs. Yersina pestis KIM ... http://mummer.sourceforge.net/examples. walkthroughs. Email. mummer-help ...

Usage Examples. WGA example with nucmer. Yersina pestis CO92 vs. Yersina pestis KIM ... http://mummer.sourceforge.net/examples. walkthroughs. Email. mummer-help ...

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Locating conserved genes in whole genome scale PowerPoint PPT Presentation

Locating conserved genes in whole genome scale - ... outperforms MaxMinCluster and MUMmer-3 on closely related ... can apply either MUMmer-3 or MaxMinCluster. these clusters are treated as MUM with bigger weight ...

... outperforms MaxMinCluster and MUMmer-3 on closely related ... can apply either MUMmer-3 or MaxMinCluster. these clusters are treated as MUM with bigger weight ...

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Drama in Colonial America PowerPoint PPT Presentation

Drama in Colonial America - Mummer's Play. Also known as 'mumming' ... Mummer's plays. British professional actors formed a group to begin touring in the colonies ...

Mummer's Play. Also known as 'mumming' ... Mummer's plays. British professional actors formed a group to begin touring in the colonies ...

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Alignment of whole genomes using suffix trees - ... LIS (Longest Increasing Subsequences), Smith-Waterman alignment algorithm ... Use the Smith-Waterman alignments ( short gaps) 13. MUMmer Output. 14. Observations ...

... LIS (Longest Increasing Subsequences), Smith-Waterman alignment algorithm ... Use the Smith-Waterman alignments ( short gaps) 13. MUMmer Output. 14. Observations ...

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CS882' Chapter 1' Modern Homology Search Techniques PowerPoint PPT Presentation

CS882' Chapter 1' Modern Homology Search Techniques - ... WU-Blast, psi-Blast, SIM, BLAT, MUMmer, Quasar, etc. ... Suffix tree: MUMmer, Quasar, REPuter. Only good for precise matches, highly similar sequences. ...

... WU-Blast, psi-Blast, SIM, BLAT, MUMmer, Quasar, etc. ... Suffix tree: MUMmer, Quasar, REPuter. Only good for precise matches, highly similar sequences. ...

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Latvian annual festivals at astronomicaly significant points of the tropical year PowerPoint PPT Presentation

Latvian annual festivals at astronomicaly significant points of the tropical year - In the Christian tradition Christmas is the birth of Gods son, but in ... The best known Christmas tradition is mumming. The mummers are costumed and in ...

In the Christian tradition Christmas is the birth of Gods son, but in ... The best known Christmas tradition is mumming. The mummers are costumed and in ...

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She Will Confess Her Love to You With in 3 hours - She Will Confess Her Love to You With in 3 hours

She Will Confess Her Love to You With in 3 hours

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Whole Genome Alignment - A perfect alignment between A and B would completely fill the positive diagonal. B ... Global pairwise alignment ...AAGCTTGGCTTAGCTGCTAGGGTAGGCTTGGG...

A perfect alignment between A and B would completely fill the positive diagonal. B ... Global pairwise alignment ...AAGCTTGGCTTAGCTGCTAGGGTAGGCTTGGG...

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Double-Ended Shotgun Sequencing of PA14 PowerPoint PPT Presentation

Double-Ended Shotgun Sequencing of PA14 - Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02

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Whole Genome Alignment - standard alignment: point mutations, insertions, deletions ... inserts ... simple insertions: trivial to detect. Step 3: Close the Gaps. polymorphic regions ...

standard alignment: point mutations, insertions, deletions ... inserts ... simple insertions: trivial to detect. Step 3: Close the Gaps. polymorphic regions ...

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V4 - V4 Analyse von Genomsequenzen - Gene identifizieren z.B. Hidden Markov Modelle - Transkriptionsfaktorbindestellen identifizieren Position Specific Scoring ...

V4 Analyse von Genomsequenzen - Gene identifizieren z.B. Hidden Markov Modelle - Transkriptionsfaktorbindestellen identifizieren Position Specific Scoring ...

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Genome - Genome & Protein Sequence Analysis Programs application in establishing Epidemiology and Variability RAJESH KUMAR Ph.D 1st yr Dairy Microbiology Division

Genome & Protein Sequence Analysis Programs application in establishing Epidemiology and Variability RAJESH KUMAR Ph.D 1st yr Dairy Microbiology Division

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Slavery in America PowerPoint PPT Presentation

Slavery in America - Slavery in America From Colonial America to Antebellum U.S. Image of Black Urban Culture: Street Performance Major Issues that Defined Atlantic World Control and ...

Slavery in America From Colonial America to Antebellum U.S. Image of Black Urban Culture: Street Performance Major Issues that Defined Atlantic World Control and ...

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An Efficient Index Structure for String Databases PowerPoint PPT Presentation

An Efficient Index Structure for String Databases - Find similar substrings in a database, that are similar to a given query string ... Extend to weighted edit distance and affine gaps. ...

Find similar substrings in a database, that are similar to a given query string ... Extend to weighted edit distance and affine gaps. ...

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The Genome Access Course Genome Analysis - The Genome Access Course Genome Analysis

The Genome Access Course Genome Analysis

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Success Thru Small Loosely Coupled Pieces: A View From Three Perspectives - Success Thru Small Loosely Coupled Pieces: A View From Three Perspectives

Success Thru Small Loosely Coupled Pieces: A View From Three Perspectives

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Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance PowerPoint PPT Presentation

Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance - Title: Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance Author: abdullah Last modified by: Matei Ripeanu Created Date

Title: Size Matters: Space/Time Tradeoffs to Improve GPGPU Applications Performance Author: abdullah Last modified by: Matei Ripeanu Created Date

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Assembly by alignment PowerPoint PPT Presentation

Assembly by alignment - ... finished genome 26,099 reads total 25,310 uniquely anchored in genome 314 placed with the help of a uniquely anchored mate 22 were placed as unique pairs, ...

... finished genome 26,099 reads total 25,310 uniquely anchored in genome 314 placed with the help of a uniquely anchored mate 22 were placed as unique pairs, ...

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CAP5510 - BLASTP, BLASTN, TBLAST, BLASTX, BLAT, BLASTZ, MegaBLAST, PsiBLAST, PhiBLAST. Others ... BLAT, BLASTZ, MegaBLAST. FLASH, PatternHunter, SSAHA, SENSEI, WABA, ...

BLASTP, BLASTN, TBLAST, BLASTX, BLAT, BLASTZ, MegaBLAST, PsiBLAST, PhiBLAST. Others ... BLAT, BLASTZ, MegaBLAST. FLASH, PatternHunter, SSAHA, SENSEI, WABA, ...

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Formal Grammars PowerPoint PPT Presentation

Formal Grammars - ... bacterial endosymbiont of fruit flies (genus Drosophila) and other insects, ... is often inadvertently sequenced as part of a fruit fly genome project. ...

... bacterial endosymbiont of fruit flies (genus Drosophila) and other insects, ... is often inadvertently sequenced as part of a fruit fly genome project. ...

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Molecular evidence for endosymbiosis PowerPoint PPT Presentation

Molecular evidence for endosymbiosis - Found yeast nuclear genes exhibit more sequence similarity (closer in ... Alignment via Smith-Waterman. Origin of species. Mitochondrial DNA and human evolution ...

Found yeast nuclear genes exhibit more sequence similarity (closer in ... Alignment via Smith-Waterman. Origin of species. Mitochondrial DNA and human evolution ...

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The Genome Access Course Genome Analysis - The Genome Access Course Genome Analysis

The Genome Access Course Genome Analysis

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Whole Genome Alignment WGA PowerPoint PPT Presentation

Whole Genome Alignment WGA - When the genomic DNA sequences of closely related organisms become ... other implementations: QUASAR, REPuter. 4. Lecture WS 2003/04. Bioinformatics III. 16 ...

When the genomic DNA sequences of closely related organisms become ... other implementations: QUASAR, REPuter. 4. Lecture WS 2003/04. Bioinformatics III. 16 ...

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Whole Genome Alignment using Multithreaded Parallel Implementation PowerPoint PPT Presentation

Whole Genome Alignment using Multithreaded Parallel Implementation - Smith and Waterman approach: Aligns subsequences of given sequences ... Smith-Waterman. Time. Implementation. CMSC 838T Presentation. Evaluation ...

Smith and Waterman approach: Aligns subsequences of given sequences ... Smith-Waterman. Time. Implementation. CMSC 838T Presentation. Evaluation ...

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Basics of Sequence Alignment and Weight Matrices and DOT Plot PowerPoint PPT Presentation

Basics of Sequence Alignment and Weight Matrices and DOT Plot - Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/

Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/

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Highthroughput sequence alignment using Graphics Processing Units PowerPoint PPT Presentation

Highthroughput sequence alignment using Graphics Processing Units - High-throughput sequence alignment using Graphics Processing Units ... NGS technologies produce a ton of data. AB SOLiD: 22e6 25-mers. Others are even worse...

High-throughput sequence alignment using Graphics Processing Units ... NGS technologies produce a ton of data. AB SOLiD: 22e6 25-mers. Others are even worse...

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Comprehensive Microbial Resource www.tigr.org/CMR PowerPoint PPT Presentation

Comprehensive Microbial Resource www.tigr.org/CMR - Caudal Fins. http://web.pdx.edu/~bowersn/bi399/lecture2.html. Caudal Fins. Dorsal Spines ... which institution the sequence was derived, and whether it is part ...

Caudal Fins. http://web.pdx.edu/~bowersn/bi399/lecture2.html. Caudal Fins. Dorsal Spines ... which institution the sequence was derived, and whether it is part ...

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Find unique matches then maximum matches PowerPoint PPT Presentation

Find unique matches then maximum matches - 2. Find a longest set of MUMs in the increasing order ... Tandem repeats (with difference number of copies) No need to pre-screen the repetitive regions ...

2. Find a longest set of MUMs in the increasing order ... Tandem repeats (with difference number of copies) No need to pre-screen the repetitive regions ...

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Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local PowerPoint PPT Presentation

Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local - Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local & Global Alignment) ... of Two Sequences (Pair-wise Alignment) The Scoring Schemes or ...

Pair-wise and Multiple Sequence Alignment Using Dynamic Programming (Local & Global Alignment) ... of Two Sequences (Pair-wise Alignment) The Scoring Schemes or ...

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Multiple-Alignment PowerPoint PPT Presentation

Multiple-Alignment - ... Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA ... Visualizing Interpreting the results The multiple ... data sets that can ...

... Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA ... Visualizing Interpreting the results The multiple ... data sets that can ...

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Political%20Humor PowerPoint PPT Presentation

Political%20Humor - Between 1984 and 1992, Bud Clark was the mayor of Portland, Oregon. ... Obama's celebrity status by comparing him with Paris Hilton and Britney Spears. ...

Between 1984 and 1992, Bud Clark was the mayor of Portland, Oregon. ... Obama's celebrity status by comparing him with Paris Hilton and Britney Spears. ...

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Whole Genome Alignment - Two nucleotides are said to be homologous if they are descendants of a common ... in one sequence is either paired with a residue in the other one or a dash. ...

Two nucleotides are said to be homologous if they are descendants of a common ... in one sequence is either paired with a residue in the other one or a dash. ...

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Various Career Options Available PowerPoint PPT Presentation

Various Career Options Available - first aligning the most similar pair of sequences ... Repeats and calculate significance (t-test) Significance of fold used statistical method ...

first aligning the most similar pair of sequences ... Repeats and calculate significance (t-test) Significance of fold used statistical method ...

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American Holidays PowerPoint PPT Presentation

American Holidays - New Year's Day January 1 Remarks Official Name Date Celebrates the Nativity of Jesus. ... Polar Bear Clubs in many northern hemisphere cities near bodies of water, ...

New Year's Day January 1 Remarks Official Name Date Celebrates the Nativity of Jesus. ... Polar Bear Clubs in many northern hemisphere cities near bodies of water, ...

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Comparative Gene Finding PowerPoint PPT Presentation

Comparative Gene Finding - Comparative Gene Finding B. Majoros Comparative Gene Finding * Problem: Predict genes in a target genome S based on the contents of S and also based on the contents ...

Comparative Gene Finding B. Majoros Comparative Gene Finding * Problem: Predict genes in a target genome S based on the contents of S and also based on the contents ...

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De%20novo%20bacterial%20genome%20sequencing:%20millions%20of%20very%20short%20reads%20assembled%20on%20a%20desktop%20computer PowerPoint PPT Presentation

De%20novo%20bacterial%20genome%20sequencing:%20millions%20of%20very%20short%20reads%20assembled%20on%20a%20desktop%20computer - David Hernandez, Patrice Fran ois, Laurent Farinelli, Magne ster s, ... Reads and their reverse complements are considered the same read merged into the ...

David Hernandez, Patrice Fran ois, Laurent Farinelli, Magne ster s, ... Reads and their reverse complements are considered the same read merged into the ...

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Alignment Algorithms PowerPoint PPT Presentation

Alignment Algorithms - A function f(n) is O(g(n)) if there exist positive constants c ... 1981 Smith-Waterman algorithm developed. 1985 FASTP/FASTN: fast sequence similarity searching ...

A function f(n) is O(g(n)) if there exist positive constants c ... 1981 Smith-Waterman algorithm developed. 1985 FASTP/FASTN: fast sequence similarity searching ...

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Edgar Allan Poe PowerPoint PPT Presentation

Edgar Allan Poe - Edgar Allan Poe From childhood's hour I have not been as others were (Humanities 4) Edgar Allan Poe 1809-1849 Poet, critic, journalist Gothic, science fiction ...

Edgar Allan Poe From childhood's hour I have not been as others were (Humanities 4) Edgar Allan Poe 1809-1849 Poet, critic, journalist Gothic, science fiction ...

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Genome Databases and Analysis PowerPoint PPT Presentation

Genome Databases and Analysis - Genome Databases and Analysis With the advent of the genome sequencing technology, biological research has now easy and fast access to the complete DNA sequences of ...

Genome Databases and Analysis With the advent of the genome sequencing technology, biological research has now easy and fast access to the complete DNA sequences of ...

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Genomics - Harder fragment assembly and genome mapping; such as packages from the ... from the AATAAA Signal is Required for Efficient Formation of mRNA 3' Termini. ...

Harder fragment assembly and genome mapping; such as packages from the ... from the AATAAA Signal is Required for Efficient Formation of mRNA 3' Termini. ...

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Multiple Sequence Alignment PowerPoint PPT Presentation

Multiple Sequence Alignment - ... interfaces Conserved residue analysis Comparison of sequence-based methods Central role of multiple alignments Bioinformatique Multiple Sequence Alignment ...

... interfaces Conserved residue analysis Comparison of sequence-based methods Central role of multiple alignments Bioinformatique Multiple Sequence Alignment ...

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Medieval Theatre PowerPoint PPT Presentation

Medieval Theatre - ... both pagan and Christian elements ( e.g. Halloween and Christmas celebrations ) ... Set and costumes ... dependent upon costume and makeup. Interludes ...

... both pagan and Christian elements ( e.g. Halloween and Christmas celebrations ) ... Set and costumes ... dependent upon costume and makeup. Interludes ...

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Basics of Sequence Alignment and Weight Matrices and DOT Plot - Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/ Importance of Sequence ...

Basics of Sequence Alignment and Weight Matrices and DOT Plot G P S Raghava Email: raghava@imtech.res.in Web: http://imtech.res.in/raghava/ Importance of Sequence ...

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Medieval Theatre - Medieval Theatre Medieval Theatre Time frame: 5th c- mid 16th c Secular theatre died in Western Europe with the fall of Rome Theatrical performances were banned by ...

Medieval Theatre Medieval Theatre Time frame: 5th c- mid 16th c Secular theatre died in Western Europe with the fall of Rome Theatrical performances were banned by ...

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Techniques for Protein Sequence Alignment and Database Searching PowerPoint PPT Presentation

Techniques for Protein Sequence Alignment and Database Searching - Techniques for Protein Sequence Alignment and Database Searching. G P S Raghava ... Fitch 1966 based on Nucleotide Base change required (0,1,2,3) ...

Techniques for Protein Sequence Alignment and Database Searching. G P S Raghava ... Fitch 1966 based on Nucleotide Base change required (0,1,2,3) ...

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Comparative Gene Finding - Rationale: Natural selection should operate more strongly on ... galago: ... galago. Using multiple genomes increases ...

Rationale: Natural selection should operate more strongly on ... galago: ... galago. Using multiple genomes increases ...

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String Data Structures and Algorithms PowerPoint PPT Presentation

String Data Structures and Algorithms - BBSI Summer School - Iowa State University. 2. Why Strings? ... BBSI Summer School - Iowa State University. 9. S = M A L A Y A L A M $ 1 2 3 4 5 6 7 8 9 10 ...

BBSI Summer School - Iowa State University. 2. Why Strings? ... BBSI Summer School - Iowa State University. 9. S = M A L A Y A L A M $ 1 2 3 4 5 6 7 8 9 10 ...

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Information Management for Genome Level Bioinformatics PowerPoint PPT Presentation

Information Management for Genome Level Bioinformatics - Title: Incremental Maintenance of Materialized OQL Views Author: Norman Paton Last modified by: norm Created Date: 11/4/2000 11:38:08 AM Document presentation format

Title: Incremental Maintenance of Materialized OQL Views Author: Norman Paton Last modified by: norm Created Date: 11/4/2000 11:38:08 AM Document presentation format

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Various Career Options Available - SRF: Spectral Repeat Finder (SRF) is a program to find repeats through an ... also launched by European Bioinformatics Institute (EBI) Hinxton, Cambridge, UK. ...

SRF: Spectral Repeat Finder (SRF) is a program to find repeats through an ... also launched by European Bioinformatics Institute (EBI) Hinxton, Cambridge, UK. ...

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TWAIN: a new tool for parallel gene finding and other gene finders PowerPoint PPT Presentation

TWAIN: a new tool for parallel gene finding and other gene finders - Arabidopsis thaliana Lin et al., Nature 402: 761-8 (2000) ... Mammals: chimp, dog, cow, pig. Acknowledgements. GLIMMER: Arthur Delcher, Simon Kasif, Owen White ...

Arabidopsis thaliana Lin et al., Nature 402: 761-8 (2000) ... Mammals: chimp, dog, cow, pig. Acknowledgements. GLIMMER: Arthur Delcher, Simon Kasif, Owen White ...

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Ohnos Evolution by Duplication and DNA Correlations PowerPoint PPT Presentation

Ohnos Evolution by Duplication and DNA Correlations - Music as the second example where the three themes converge (1/f noise ... 6000 genes, about of them are part of 'duplicates', the rest exist as 'singletons' ...

Music as the second example where the three themes converge (1/f noise ... 6000 genes, about of them are part of 'duplicates', the rest exist as 'singletons' ...

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Hinduism vs. Christianity PowerPoint PPT Presentation

Hinduism vs. Christianity - Hinduism vs. Christianity Mai Xee Yang Visit www.worldofteaching.com For 100 s of free powerpoints Hinduism Also known as The Sanatana Dharma Hinduism is a way of ...

Hinduism vs. Christianity Mai Xee Yang Visit www.worldofteaching.com For 100 s of free powerpoints Hinduism Also known as The Sanatana Dharma Hinduism is a way of ...

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Mummer PowerPoint PPT Presentations