1,038 Orthology PPTs View free & download

Orthology Analysis PowerPoint PPT Presentation

Orthology Analysis - Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...

Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...

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Orthology%20Analysis PowerPoint PPT Presentation

Orthology%20Analysis - ... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...

... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...

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What are orthologs PowerPoint PPT Presentation

What are orthologs - How should MODs represent orthology, similarity, paralogy? ... groups to periodically compute orthology relationships according to their own ...

How should MODs represent orthology, similarity, paralogy? ... groups to periodically compute orthology relationships according to their own ...

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Homologs, Orthologs and Paralogs PowerPoint PPT Presentation

Homologs, Orthologs and Paralogs - Homologs, Orthologs and Paralogs Identifying changes in the genome requires resolving evolutionary relationships for all bases. Homologues: Common descent from an ...

Homologs, Orthologs and Paralogs Identifying changes in the genome requires resolving evolutionary relationships for all bases. Homologues: Common descent from an ...

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Orthologs, Diseases, and Interactions PowerPoint PPT Presentation

Orthologs, Diseases, and Interactions - Orthology Report. List of diseases for gene. Searching Multiple Ontologies ... Orthology and Disease. Search functionalities. Interlinking between pages ...

Orthology Report. List of diseases for gene. Searching Multiple Ontologies ... Orthology and Disease. Search functionalities. Interlinking between pages ...

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Benchmarking Orthology in Eukaryotes PowerPoint PPT Presentation

Benchmarking Orthology in Eukaryotes - Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...

Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...

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An orthology case study: the trypsin inhibition pathway PowerPoint PPT Presentation

An orthology case study: the trypsin inhibition pathway - ... genes whose independent evolution reflects a speciation event' (Fitch, 1970) ... Orthology is often used for the transfer of functional annotation from proteins ...

... genes whose independent evolution reflects a speciation event' (Fitch, 1970) ... Orthology is often used for the transfer of functional annotation from proteins ...

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Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. PowerPoint PPT Presentation

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. - Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

Supplemental Figure 3. Syntenic relationship between putative soybean orthologous genes to MtERN and MtERN. 70 Kbp surrounding putative soybean orthologous genes to ...

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Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications (I), and Orthology PowerPoint PPT Presentation

Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications (I), and Orthology - Title: Amsterdam 2004 Author: Berend Snel Last modified by: Snel Created Date: 1/10/2003 9:04:34 AM Document presentation format: On-screen Show (4:3)

Title: Amsterdam 2004 Author: Berend Snel Last modified by: Snel Created Date: 1/10/2003 9:04:34 AM Document presentation format: On-screen Show (4:3)

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FOG: HighResolution Fungal Orthologous Groups PowerPoint PPT Presentation

FOG: HighResolution Fungal Orthologous Groups - FOG: High-Resolution Fungal Orthologous Groups. Ren van der Heijden ... Phylogenetic trees are analyzed using LOFT resulting in high-resolution orthology ...

FOG: High-Resolution Fungal Orthologous Groups. Ren van der Heijden ... Phylogenetic trees are analyzed using LOFT resulting in high-resolution orthology ...

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Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. PowerPoint PPT Presentation

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. - Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

Supplemental Figure 2. Syntenic relationship between putative soybean orthologous genes to MtHAP2-1 and MtHAP2-1. 70 Kbp surrounding putative soybean orthologous ...

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ANALYSIS AND VISUALIZATION OF SINGLE COPY ORTHOLOGS IN ARABIDOPSIS, PowerPoint PPT Presentation

ANALYSIS AND VISUALIZATION OF SINGLE COPY ORTHOLOGS IN ARABIDOPSIS, - ANALYSIS AND VISUALIZATION OF SINGLE COPY ORTHOLOGS IN ARABIDOPSIS, LETTUCE, SUNFLOWER AND OTHER PLANT SPECIES. Alexander Kozik and Richard W. Michelmore

ANALYSIS AND VISUALIZATION OF SINGLE COPY ORTHOLOGS IN ARABIDOPSIS, LETTUCE, SUNFLOWER AND OTHER PLANT SPECIES. Alexander Kozik and Richard W. Michelmore

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ANALYSIS AND VISUALIZATION OF SINGLE COPY ORTHOLOGS IN ARABIDOPSIS, - codon mismatch. and. amino acid mismatch (non-synonymous ... Script automatically counts codon usage. Output: spreadsheet with info about codon usage ...

codon mismatch. and. amino acid mismatch (non-synonymous ... Script automatically counts codon usage. Output: spreadsheet with info about codon usage ...

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Expressing Centromere Histone (CENH3) Orthologs in Arabidopsis thaliana to Test Functional Conservation PowerPoint PPT Presentation

Expressing Centromere Histone (CENH3) Orthologs in Arabidopsis thaliana to Test Functional Conservation - L. nivea (holocentric) C. elegans (holocentric) * * Title: PowerPoint Presentation Author: Ron the Greater Last modified by: Computer Lab Management

L. nivea (holocentric) C. elegans (holocentric) * * Title: PowerPoint Presentation Author: Ron the Greater Last modified by: Computer Lab Management

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Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications I, and Orthology - Bioinformatics and Evolutionary Genomics. Gene Trees, Gene Duplications ... Start from a multiple ... Domain cassettes. Domains. i.e. genome comparison ...

Bioinformatics and Evolutionary Genomics. Gene Trees, Gene Duplications ... Start from a multiple ... Domain cassettes. Domains. i.e. genome comparison ...

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Phylogenetic Trees PowerPoint PPT Presentation

Phylogenetic Trees - Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

Orthology : two genes are orthologous iff. they diverged following a speciation event. ... Orthology functional equivalence. Primates. Rodents. Human. ancestral ...

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Aucun titre de diapositive PowerPoint PPT Presentation

Aucun titre de diapositive - ... concepts of evolutionary biology in genome annotation. Comparative genomics, concept of orthology and paralogy. What is phylogenomics? ... Orthology/ Paralogy ...

... concepts of evolutionary biology in genome annotation. Comparative genomics, concept of orthology and paralogy. What is phylogenomics? ... Orthology/ Paralogy ...

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InnateDB - Specific to human and mouse with bovine orthology information. ... Integrated Orthology & Gene Order Information. Mouse & Cow Orthologous Genes ...

Specific to human and mouse with bovine orthology information. ... Integrated Orthology & Gene Order Information. Mouse & Cow Orthologous Genes ...

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Comparative Genomics of Drosophila PowerPoint PPT Presentation

Comparative Genomics of Drosophila - Mercator: Multiple whole-genome orthology map construction ... Set of orthologous segments forms an orthology map. Mercator: Input. Species 1. Species 2 ...

Mercator: Multiple whole-genome orthology map construction ... Set of orthologous segments forms an orthology map. Mercator: Input. Species 1. Species 2 ...

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SUPPLEMENTARY FIGURES PowerPoint PPT Presentation

SUPPLEMENTARY FIGURES - SUPPLEMENTARY FIGURES Supplementary Figure 1. Mapping orthologous poly(A) sites across species. (A) Identification of orthologous poly(A) sites across species.

SUPPLEMENTARY FIGURES Supplementary Figure 1. Mapping orthologous poly(A) sites across species. (A) Identification of orthologous poly(A) sites across species.

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Similarity vs. Homology PowerPoint PPT Presentation

Sir Richard Owen, Lectures on the Comparative Anatomy and Physiology of the ... Orthology. Orthologs: Hemoglobin A. Sharing a Common Ancestor: Paralogy ...

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Introduction to the GO: a users guide PowerPoint PPT Presentation

Introduction to the GO: a users guide - ISO - inferred from sequence orthology. ISM - inferred from sequence model ... public orthology prediction tool(s) 1:1 orthologs. transfer GO annotation to your ...

ISO - inferred from sequence orthology. ISM - inferred from sequence model ... public orthology prediction tool(s) 1:1 orthologs. transfer GO annotation to your ...

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Wirkstoffeigenschaften PowerPoint PPT Presentation

Wirkstoffeigenschaften - Vorlesung Modern Methods in Drug Discovery WS05/06 Wirkstoffeigenschaften Informationsflu in einer drug ... gibt es das orthologe Protein bei Drosophila ...

Vorlesung Modern Methods in Drug Discovery WS05/06 Wirkstoffeigenschaften Informationsflu in einer drug ... gibt es das orthologe Protein bei Drosophila ...

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Evolutionary Biology Concepts PowerPoint PPT Presentation

Evolutionary Biology Concepts - 'In fact, evolution can be precisely defined as any change in the ... Homology, Orthology, Paralogy. Orthologs. Paralogs. Paralogy Trap. Improper Inference ...

'In fact, evolution can be precisely defined as any change in the ... Homology, Orthology, Paralogy. Orthologs. Paralogs. Paralogy Trap. Improper Inference ...

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Bioinformatics for Genomic and Proteomic data analysis PowerPoint PPT Presentation

Bioinformatics for Genomic and Proteomic data analysis - Predicting phyico-chemical properties of protein (ProtParam) ... frog A chick A mouse A. mouse B chick B frog B. paralogs. orthologs orthologs. gene duplication ...

Predicting phyico-chemical properties of protein (ProtParam) ... frog A chick A mouse A. mouse B chick B frog B. paralogs. orthologs orthologs. gene duplication ...

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Databases at NCBI PowerPoint PPT Presentation

Databases at NCBI - The structure is achieved by organizing the data according to a ... http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/Orthology.html. HomoloGene. HomoloGene ...

The structure is achieved by organizing the data according to a ... http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/Orthology.html. HomoloGene. HomoloGene ...

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An%20orthology%20case%20study:%20the%20trypsin%20inhibition%20pathway PowerPoint PPT Presentation

An%20orthology%20case%20study:%20the%20trypsin%20inhibition%20pathway - Orthology: describes 'the evolutionary relationship between homologous genes ... Orthology is often used for the transfer of functional annotation from proteins ...

Orthology: describes 'the evolutionary relationship between homologous genes ... Orthology is often used for the transfer of functional annotation from proteins ...

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Essential Transcriptomics: Understanding the New TRANSFAC Professional Database of Transcription Fac PowerPoint PPT Presentation

Essential Transcriptomics: Understanding the New TRANSFAC Professional Database of Transcription Fac - Orthology data. Gene families. Homology data. Related proteins. Classified by species ... binding observed in species Y ('orthology-based transitive assignment' ...

Orthology data. Gene families. Homology data. Related proteins. Classified by species ... binding observed in species Y ('orthology-based transitive assignment' ...

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Tree Pattern Matching in Phylogenetic Trees PowerPoint PPT Presentation

Tree Pattern Matching in Phylogenetic Trees - Create algorithms that allow for automatic searching for orthologs or paralogs ... into clusters of orthologs depends on evolutionary distance between species ...

Create algorithms that allow for automatic searching for orthologs or paralogs ... into clusters of orthologs depends on evolutionary distance between species ...

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OBO and OBD: Biomedical ontologies and data PowerPoint PPT Presentation

OBO and OBD: Biomedical ontologies and data - OBO and OBD: Biomedical ontologies and data. Chris Mungall ... orthology. Mutations in orthologous genes give rise to similar phenotypes ...

OBO and OBD: Biomedical ontologies and data. Chris Mungall ... orthology. Mutations in orthologous genes give rise to similar phenotypes ...

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Detecting and Interpreting Genetic Homology PowerPoint PPT Presentation

Detecting and Interpreting Genetic Homology - 'The same organ in different animals under a variety of form and ... Orthology. Protein Orthology. Sharing a Common Ancestor: Paralogy. Functional Conservation ...

'The same organ in different animals under a variety of form and ... Orthology. Protein Orthology. Sharing a Common Ancestor: Paralogy. Functional Conservation ...

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Integrating Genomic Mapping Data using Ontologies: A View from the Closed World Trevor Paterson and PowerPoint PPT Presentation

Integrating Genomic Mapping Data using Ontologies: A View from the Closed World Trevor Paterson and - best sequence similarity conserved position orthology. duplication in one species cf. ... Orthology Databases) WE ONLY RECORD POSITIVE DATA! ...

best sequence similarity conserved position orthology. duplication in one species cf. ... Orthology Databases) WE ONLY RECORD POSITIVE DATA! ...

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Reconstructing the metabolic network of a bacterium from its genome: the construction of LacplantCyc PowerPoint PPT Presentation

Reconstructing the metabolic network of a bacterium from its genome: the construction of LacplantCyc - In silico reconstruction of the metabolic pathways of ... determine orthology (use phylogeny and gene-context to determine evolutionary relationship) ...

In silico reconstruction of the metabolic pathways of ... determine orthology (use phylogeny and gene-context to determine evolutionary relationship) ...

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Identification of Transcription Factor Binding Sites PowerPoint PPT Presentation

Identification of Transcription Factor Binding Sites - Identifying known TFBSs in previously unknown locations. ... 40% alignment between human and mice genome. 80% of mouse genes have orthologs in human genome ...

Identifying known TFBSs in previously unknown locations. ... 40% alignment between human and mice genome. 80% of mouse genes have orthologs in human genome ...

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KVL bioinformatics. PowerPoint PPT Presentation

KVL bioinformatics. - Der arbejdes kun lidt med udvikling af ... Orthology (ortho-, exact) ... Homology (including orthology and paralogy) is a. property that cannot be measured. ...

Der arbejdes kun lidt med udvikling af ... Orthology (ortho-, exact) ... Homology (including orthology and paralogy) is a. property that cannot be measured. ...

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Finding regulatory modules from local alignment PowerPoint PPT Presentation

Finding regulatory modules from local alignment - Finding regulatory modules from local alignment. Department of ... We compared human genes to orthologs in mouse, rat, chicken, fugu, tetraodon and zebrafish ...

Finding regulatory modules from local alignment. Department of ... We compared human genes to orthologs in mouse, rat, chicken, fugu, tetraodon and zebrafish ...

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NCBI Overview PowerPoint PPT Presentation

NCBI Overview - ... HomoloGene HomoloGene HomoloGene is a resource of curated and calculated orthologs for genes as represented by UniGene or by annotation of genomic sequences ...

... HomoloGene HomoloGene HomoloGene is a resource of curated and calculated orthologs for genes as represented by UniGene or by annotation of genomic sequences ...

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U.S. Tissue Engineering Markets Minimizing Costs Key to Market Penetration PowerPoint PPT Presentation

U.S. Tissue Engineering Markets Minimizing Costs Key to Market Penetration - ... AG Organogenesis, Inc. Orquest, Inc. ORTEC International, Inc. OrthoLogic Orthovita, Inc. Osiris Therapeutics, Inc. OsteoBiologics, Inc. Osteotech, Inc ...

... AG Organogenesis, Inc. Orquest, Inc. ORTEC International, Inc. OrthoLogic Orthovita, Inc. Osiris Therapeutics, Inc. OsteoBiologics, Inc. Osteotech, Inc ...

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Red Tides - Red Tides Analysis of possible regulatory motifs Fe2+/Zn2+ uptake regulation proteins (FUR) Upstream sequences of orthologs with similar motifs What can we conclude ...

Red Tides Analysis of possible regulatory motifs Fe2+/Zn2+ uptake regulation proteins (FUR) Upstream sequences of orthologs with similar motifs What can we conclude ...

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Gene Duplication PowerPoint PPT Presentation

Gene Duplication - Cones and Rods. Rod cells are responsible for vision at low ... Rat 2. Orthologous genes are usually more similar in terms of function than paralogous ones! ...

Cones and Rods. Rod cells are responsible for vision at low ... Rat 2. Orthologous genes are usually more similar in terms of function than paralogous ones! ...

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Introduction to phylogenetic/phylogenomic concepts and methods PowerPoint PPT Presentation

Introduction to phylogenetic/phylogenomic concepts and methods - With a brief discussion of phylogenomic methods of species phylogeny estimation and orthology prediction methods

With a brief discussion of phylogenomic methods of species phylogeny estimation and orthology prediction methods

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Reference Genome graphs PowerPoint PPT Presentation

Reference Genome graphs - Compare annotation for orthology set. Entry indicates that ortholog exists for this organism ... PPOD orthology calls. clusters' many-to-many. MOD object id ...

Compare annotation for orthology set. Entry indicates that ortholog exists for this organism ... PPOD orthology calls. clusters' many-to-many. MOD object id ...

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Comparative Genome Annotation of Drosophila pseudoobscura and Its Implementation in chado PowerPoint PPT Presentation

Comparative Genome Annotation of Drosophila pseudoobscura and Its Implementation in chado - Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

Driven by orthology to Drosophila melanogaster (Dmel) genome (over 13000 ... Orthology Relationship. 9. GMOD Meeting, Spring 2005. Peili Zhang, FlyBase - Harvard ...

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Evaluating genes and transcripts in Ensembl PowerPoint PPT Presentation

Evaluating genes and transcripts in Ensembl - refined EST matches using EST2GENOME, spangle. Pfam ... Orthology can provide useful confirmation. If no description, check for any Family description ...

refined EST matches using EST2GENOME, spangle. Pfam ... Orthology can provide useful confirmation. If no description, check for any Family description ...

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Phylogeny - Co-orthologs of Drosophila gene AB. Orthologs (Group 1) Outparalogs of Group 1 ... It is not always the most complex model that produces the best result. ...

Co-orthologs of Drosophila gene AB. Orthologs (Group 1) Outparalogs of Group 1 ... It is not always the most complex model that produces the best result. ...

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Bioinformatics Course Outline PowerPoint PPT Presentation

Bioinformatics Course Outline - Homologue finding, sequence alignment, multiple alignment, phylogeny trees. 2 ... Homologues: Orthology vs Paralogy. Reproduced from NCBI education website. Intro. ...

Homologue finding, sequence alignment, multiple alignment, phylogeny trees. 2 ... Homologues: Orthology vs Paralogy. Reproduced from NCBI education website. Intro. ...

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Presentazione di PowerPoint PowerPoint PPT Presentation

Presentazione di PowerPoint - E-Figure 1. Alignment of DNM2 orthologs and paralogs spanning PH from amino acids 516-577.

E-Figure 1. Alignment of DNM2 orthologs and paralogs spanning PH from amino acids 516-577.

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Comparative genomics and proteomics in Ensembl PowerPoint PPT Presentation

Comparative genomics and proteomics in Ensembl - Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

Comparative genomics and proteomics in Ensembl. November 2004 ... The Compara database is one single multispecies database. Gene orthology/paralogy prediction ...

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microRNA and Gene Regulation PowerPoint PPT Presentation

microRNA and Gene Regulation - Have been described in invertebrates and vertebrates: flies, ... in humans is orthologous to Zebrafish miR-430), which direct early embryonic development. ...

Have been described in invertebrates and vertebrates: flies, ... in humans is orthologous to Zebrafish miR-430), which direct early embryonic development. ...

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Introduction to HomoloGene PowerPoint PPT Presentation

Introduction to HomoloGene - The extent to which nucleotide or protein sequences are related. ... Orthology describes genes in different species that derive from a common ancestor. ...

The extent to which nucleotide or protein sequences are related. ... Orthology describes genes in different species that derive from a common ancestor. ...

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THE INTERSPACE PROTOTYPE An Analysis Environment for Semantic Interoperability PowerPoint PPT Presentation

THE INTERSPACE PROTOTYPE An Analysis Environment for Semantic Interoperability - Gene Products (GP) Expression Location (EL) Sequence Information (SI) ... GP SI = PS (protein domain or structure) SI = HO (homologs or orthologs) ...

Gene Products (GP) Expression Location (EL) Sequence Information (SI) ... GP SI = PS (protein domain or structure) SI = HO (homologs or orthologs) ...

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Bioinformatics Course Outline - Gene prediction and promoter analysis, sequence assembly and primer design. 4 ... Homologues: Orthology vs Paralogy. Reproduced from NCBI education website. Intro. ...

Gene prediction and promoter analysis, sequence assembly and primer design. 4 ... Homologues: Orthology vs Paralogy. Reproduced from NCBI education website. Intro. ...

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Xenolog: Homologs resulting from horizontal gene transfer PowerPoint PPT Presentation

Xenolog: Homologs resulting from horizontal gene transfer - Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...

Orthologs diverged only after speciation tend to have ... Nucleic acids. proteins. BIOMOLECULES!! LEARN TO USE THE INFORMATION THAT IS ALREADY OUT THERE! ...

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Models of sequence evolution PowerPoint PPT Presentation

Models of sequence evolution - Mutations in the genetic material that are passed to the progeny (offspring) ... BASIC CONCEPTS UP TO THIS POINT: HOMOLOGY, ORTHOLOGY, PARALOGY ' ...

Mutations in the genetic material that are passed to the progeny (offspring) ... BASIC CONCEPTS UP TO THIS POINT: HOMOLOGY, ORTHOLOGY, PARALOGY ' ...

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Network Biology: understanding the cells functional organization PowerPoint PPT Presentation

Network Biology: understanding the cells functional organization - Orthology. Paralogy. 3. Graph Terminology. Node. Edge. Directed/Undirected. Degree ... The color of a node indicates the phenotypic effect of removing the ...

Orthology. Paralogy. 3. Graph Terminology. Node. Edge. Directed/Undirected. Degree ... The color of a node indicates the phenotypic effect of removing the ...

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Nessun titolo diapositiva PowerPoint PPT Presentation

Nessun titolo diapositiva - Bioinformatics: Science that derives information from computer analysis ... Orthology, homology, paralogy, analogy and xenology. rFGF2 and chFGF2 are orthologs ...

Bioinformatics: Science that derives information from computer analysis ... Orthology, homology, paralogy, analogy and xenology. rFGF2 and chFGF2 are orthologs ...

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Orthology PowerPoint PPT Presentations