Orthomcl PowerPoint PPT Presentations

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Orthology%20Analysis PowerPoint PPT Presentation
Orthology%20Analysis - ... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...
... OrthoMCL OrthoMCL (blast) proteomes HOPS Orthostrapper (tree) Pfam RIO (tree) Pfam TOGA/EGO COGs (blast) TIGR gene index COGs / KOGs COGs (blast) ...
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Benchmarking%20Orthology%20in%20Eukaryotes PowerPoint PPT Presentation
Benchmarking%20Orthology%20in%20Eukaryotes - ... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
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Orthology Analysis PowerPoint PPT Presentation
Orthology Analysis - Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...
Pairwise orthology confidence by orthostrapping' ... Orthology is not transitive! ... 286356 pairwise orthology assignments ( 75% orthostrap) ...
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BIOINFORMATIK I UEBUNG 2 PowerPoint PPT Presentation
BIOINFORMATIK I UEBUNG 2 - Title: Slide 1 Author: Andreas Prokesch Last modified by: Hackl Hubert Created Date: 1/23/2004 7:41:20 AM Document presentation format: Bildschirmpr sentation (4:3)
Title: Slide 1 Author: Andreas Prokesch Last modified by: Hackl Hubert Created Date: 1/23/2004 7:41:20 AM Document presentation format: Bildschirmpr sentation (4:3)
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Benchmarking Orthology in Eukaryotes PowerPoint PPT Presentation
Benchmarking Orthology in Eukaryotes - Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...
Benchmarked orthology determination methods. BBH: Best Bidirectional Hit ... Hard to point out the best' orthology determination method ...
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Diapositive 1 PowerPoint PPT Presentation
Diapositive 1 - GreenPhylDB: A phylogenomic platform for plant comparative genomics ... Oryza sativa and Arabidopsis thaliana model plants of monocotyledon and dicotyledon ...
GreenPhylDB: A phylogenomic platform for plant comparative genomics ... Oryza sativa and Arabidopsis thaliana model plants of monocotyledon and dicotyledon ...
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Reference Genome Project PowerPoint PPT Presentation
Reference Genome Project - What criteria should we use to collect and prioritize genes for the reference genomes? ... Special display in AmiGO. Provide annotations in a separate file ...
What criteria should we use to collect and prioritize genes for the reference genomes? ... Special display in AmiGO. Provide annotations in a separate file ...
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Reference Genome Project PowerPoint PPT Presentation
Reference Genome Project - Those organisms were selected because they are ... of common genes between human, fly and zebrafish that were being used as a test ...
Those organisms were selected because they are ... of common genes between human, fly and zebrafish that were being used as a test ...
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Community Standards and Comparative Genomics PowerPoint PPT Presentation
Community Standards and Comparative Genomics - Community Standards and Comparative Genomics
Community Standards and Comparative Genomics
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Introduction to phylogenetic/phylogenomic concepts and methods PowerPoint PPT Presentation
Introduction to phylogenetic/phylogenomic concepts and methods - With a brief discussion of phylogenomic methods of species phylogeny estimation and orthology prediction methods
With a brief discussion of phylogenomic methods of species phylogeny estimation and orthology prediction methods
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Testing sequence comparison methods with structure similarity PowerPoint PPT Presentation
Testing sequence comparison methods with structure similarity - ASTRAL SCOP: Structural Classification Of Proteins ... True positives: in same SCOP family, or false positives: not in same family ...
ASTRAL SCOP: Structural Classification Of Proteins ... True positives: in same SCOP family, or false positives: not in same family ...
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ApiDB: User Studies and Impact on Development PowerPoint PPT Presentation
ApiDB: User Studies and Impact on Development - ... Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Diseases. ApiDB.org -- umbrella /integrated site for apicomplexan parasites ...
... Bioinformatics Resource Center for Biodefense and Emerging/Re-emerging Infectious Diseases. ApiDB.org -- umbrella /integrated site for apicomplexan parasites ...
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The Genome Gamble, Knowledge or Carnage PowerPoint PPT Presentation
The Genome Gamble, Knowledge or Carnage - ... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...
... Leading the Way @ Organon. Tim Hulsen, Oss, November ... (only accessible from Organon, CMBI and SARA) 10 (3) Testing the advantages of our ortholog set ...
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Bioinformatics Werkbespreking 20061107 PowerPoint PPT Presentation
Bioinformatics Werkbespreking 20061107 - BeNeLux BioInformatics Conference 2006. Introduction (1) Phylogenetic patterns show presence/absence of genes over a certain set of species: ...
BeNeLux BioInformatics Conference 2006. Introduction (1) Phylogenetic patterns show presence/absence of genes over a certain set of species: ...
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The Genome Gamble, Knowledge or Carnage? PowerPoint PPT Presentation
The Genome Gamble, Knowledge or Carnage? - Co-expression = Cab (-1 =corr. =1) Ca'b' = Cab ... Ca'b' = Cab. Human/Mouse. Increases probability that A and B are involved in the same process ...
Co-expression = Cab (-1 =corr. =1) Ca'b' = Cab ... Ca'b' = Cab. Human/Mouse. Increases probability that A and B are involved in the same process ...
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A modified Smith-Waterman alignment8 was performed on all the proteins in the mini-database PowerPoint PPT Presentation
A modified Smith-Waterman alignment8 was performed on all the proteins in the mini-database - A modified Smith-Waterman alignment8 was performed on all the proteins in ... TX, 2Northern Arizona University, Flagstaff AZ, 3BioHealthBase/Northrop Grumman ...
A modified Smith-Waterman alignment8 was performed on all the proteins in ... TX, 2Northern Arizona University, Flagstaff AZ, 3BioHealthBase/Northrop Grumman ...
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Bioinformatics Werkbespreking 2006-11-07 PowerPoint PPT Presentation
Bioinformatics Werkbespreking 2006-11-07 - Bioinformatics Werkbespreking 2006-11-07. 1 PhyloPat: phylogenetic pattern ... BeNeLux BioInformatics Conference 2006. Introduction (1) ...
Bioinformatics Werkbespreking 2006-11-07. 1 PhyloPat: phylogenetic pattern ... BeNeLux BioInformatics Conference 2006. Introduction (1) ...
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Phylogeny PowerPoint PPT Presentation
Phylogeny - Co-orthologs of Drosophila gene AB. Orthologs (Group 1) Outparalogs of Group 1 ... It is not always the most complex model that produces the best result. ...
Co-orthologs of Drosophila gene AB. Orthologs (Group 1) Outparalogs of Group 1 ... It is not always the most complex model that produces the best result. ...
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From a Genome Database to a Semantic Knowledge Base PowerPoint PPT Presentation
From a Genome Database to a Semantic Knowledge Base - ... line Trypansosoma Cruzi database resource. Provides genome exploration ... Semantics allow for a variety of improvements over relational database based systems ...
... line Trypansosoma Cruzi database resource. Provides genome exploration ... Semantics allow for a variety of improvements over relational database based systems ...
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A Combinatorial Approach to GenomeWide Ortholog Assignment: Beyond Sequence Similarity Search PowerPoint PPT Presentation
A Combinatorial Approach to GenomeWide Ortholog Assignment: Beyond Sequence Similarity Search - Computing signed reversal distance with duplicates. Minimum ... Polynominal-time solvable. Breakpoint graph. Breakpoint, cycle, hurdle, fortress. HP formula: ...
Computing signed reversal distance with duplicates. Minimum ... Polynominal-time solvable. Breakpoint graph. Breakpoint, cycle, hurdle, fortress. HP formula: ...
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P-POD PowerPoint PPT Presentation
P-POD - The Princeton Protein Orthology Database (P-POD): a comparative genomics ... ORF name or gene name. SGD. S.cerevisiae. ENSDARP00000007117, ZDB-GENE-040808-60 ...
The Princeton Protein Orthology Database (P-POD): a comparative genomics ... ORF name or gene name. SGD. S.cerevisiae. ENSDARP00000007117, ZDB-GENE-040808-60 ...
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