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GENBANK, SWISSPROT AND OTHERS PowerPoint PPT Presentation
GENBANK, SWISSPROT AND OTHERS - GENBANK, SWISSPROT AND OTHERS As Problem Sources for CSE 549 Andriy Tovkach Genetics GENBANK OVERVIEW Consists of EMBL, NCBI and DDBJ Started 10 years ago Exponential ...
GENBANK, SWISSPROT AND OTHERS As Problem Sources for CSE 549 Andriy Tovkach Genetics GENBANK OVERVIEW Consists of EMBL, NCBI and DDBJ Started 10 years ago Exponential ...
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GENBANK, SWISSPROT AND OTHERS PowerPoint PPT Presentation
GENBANK, SWISSPROT AND OTHERS - GENBANK, SWISSPROT AND OTHERS As Problem Sources for CSE 549 Andriy Tovkach Genetics GENBANK OVERVIEW Consists of EMBL, NCBI and DDBJ Started 10 years ago Exponential ...
GENBANK, SWISSPROT AND OTHERS As Problem Sources for CSE 549 Andriy Tovkach Genetics GENBANK OVERVIEW Consists of EMBL, NCBI and DDBJ Started 10 years ago Exponential ...
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Interoprabilit et qualit dans le contexte de SwissProt PowerPoint PPT Presentation
Interoprabilit et qualit dans le contexte de SwissProt - ... Kirsty Bates, Margaret Biswas, Marie-Claude Blatter Garin, Brigitte ... secretarial assistance: Veronique Mangold, Claudia Sapsezian, Margaret Shore-Nye, ...
... Kirsty Bates, Margaret Biswas, Marie-Claude Blatter Garin, Brigitte ... secretarial assistance: Veronique Mangold, Claudia Sapsezian, Margaret Shore-Nye, ...
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Chemoinformatics PowerPoint PPT Presentation
Chemoinformatics - School of Information and Computer Sciences. Institute for Genomics and Bioinformatics ... Bioinformatics analogy and differences: Data (GenBank, Swissprot, ...
School of Information and Computer Sciences. Institute for Genomics and Bioinformatics ... Bioinformatics analogy and differences: Data (GenBank, Swissprot, ...
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T-COFFEE, a novel method for Multiple Sequence Alignments PowerPoint PPT Presentation
T-COFFEE, a novel method for Multiple Sequence Alignments - T-COFFEE, a novel method for Multiple Sequence Alignments C dric Notredame WHO ? WHO USES T-Coffee ? Dali Domain Dictionnary Pfam SwissProt WHO Makes T-Coffee ?
T-COFFEE, a novel method for Multiple Sequence Alignments C dric Notredame WHO ? WHO USES T-Coffee ? Dali Domain Dictionnary Pfam SwissProt WHO Makes T-Coffee ?
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6. Machine Learning and Other Predictive Methods PowerPoint PPT Presentation
6. Machine Learning and Other Predictive Methods - Bioinformatics analogy and differences: Data (GenBank, Swissprot, PDB) Similarity (BLAST) ... Bioinformatics, 21, Supplement 1, i359-368, (2005). 29 ...
Bioinformatics analogy and differences: Data (GenBank, Swissprot, PDB) Similarity (BLAST) ... Bioinformatics, 21, Supplement 1, i359-368, (2005). 29 ...
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Stand alone BLAST on Linux PowerPoint PPT Presentation
Stand alone BLAST on Linux - Unzip the distribution. Helpful info: Standalone BLAST is ... Unzip the swissprot database. View the contents of the swissprot database. FASTA format ...
Unzip the distribution. Helpful info: Standalone BLAST is ... Unzip the swissprot database. View the contents of the swissprot database. FASTA format ...
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PeptideProphet Explained PowerPoint PPT Presentation
PeptideProphet Explained - sample complexities (2D gel spot vs MudPIT) different databases (SwissProt vs NR) ...
sample complexities (2D gel spot vs MudPIT) different databases (SwissProt vs NR) ...
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Protein Structure Prediction PowerPoint PPT Presentation
Protein Structure Prediction - Protein DataBank (PDB) - 23000 protein structures. SwissProt - 100,000 proteins ... spontaneously into their native conformations under physiological conditions. ...
Protein DataBank (PDB) - 23000 protein structures. SwissProt - 100,000 proteins ... spontaneously into their native conformations under physiological conditions. ...
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Using Weakly Labeled Data to Learn Models for Extracting Information from Biomedical Text PowerPoint PPT Presentation
Using Weakly Labeled Data to Learn Models for Extracting Information from Biomedical Text - Using Weakly Labeled Data to Learn Models for Extracting Information ... DAG kinase zeta. DAMOX. DASOX. DAT. DB83 protein. PubMed abstract. SwissProt dictionary ...
Using Weakly Labeled Data to Learn Models for Extracting Information ... DAG kinase zeta. DAMOX. DASOX. DAT. DB83 protein. PubMed abstract. SwissProt dictionary ...
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Approximate XML Query Answers PowerPoint PPT Presentation
Approximate XML Query Answers - Data Sets: XMark, DBLP, IMDB, SwissProt. Workload: 1000 random twig queries. Evaluation metrics: ... IMDB. 11. DBLP. Construction Time (min) Data Set. Conclusions ...
Data Sets: XMark, DBLP, IMDB, SwissProt. Workload: 1000 random twig queries. Evaluation metrics: ... IMDB. 11. DBLP. Construction Time (min) Data Set. Conclusions ...
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CISC 667 Intro to Bioinformatics (Fall 2005) Sequence Database search PowerPoint PPT Presentation
CISC 667 Intro to Bioinformatics (Fall 2005) Sequence Database search - All new or revised GenBank CDS translation PDB SwissProt PIR PRF released in the ... Yeast (Saccharomyces cerevisiae) genomic CDS translations. ecoli ...
All new or revised GenBank CDS translation PDB SwissProt PIR PRF released in the ... Yeast (Saccharomyces cerevisiae) genomic CDS translations. ecoli ...
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Bioinformatics growth curves PowerPoint PPT Presentation
Bioinformatics growth curves - Swissprot - fully annotated, so delays in things appearing. SCOP - Structural Classification of Proteins ... Broadening or narrowing search if too few or too ...
Swissprot - fully annotated, so delays in things appearing. SCOP - Structural Classification of Proteins ... Broadening or narrowing search if too few or too ...
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The Data Ring: Community Content Sharing PowerPoint PPT Presentation
The Data Ring: Community Content Sharing - The Data Ring: Community Content Sharing Serge Abiteboul (INRIA) Alkis Polyzotis (UC Santa Cruz) Data Sharing Communities Examples: UCSC genome browser, SwissProt ...
The Data Ring: Community Content Sharing Serge Abiteboul (INRIA) Alkis Polyzotis (UC Santa Cruz) Data Sharing Communities Examples: UCSC genome browser, SwissProt ...
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T-COFFEE, a novel method for Multiple Sequence Alignments PowerPoint PPT Presentation
T-COFFEE, a novel method for Multiple Sequence Alignments - T-COFFEE, a novel method for Multiple Sequence Alignments C dric Notredame WHO ? WHO USES T-Coffee ? Dali Domain Dictionnary Pfam SwissProt WHO Makes T-Coffee ?
T-COFFEE, a novel method for Multiple Sequence Alignments C dric Notredame WHO ? WHO USES T-Coffee ? Dali Domain Dictionnary Pfam SwissProt WHO Makes T-Coffee ?
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Open Source and Ontologies: Cross Domain, Cross Institutional Knowledge Reuse PowerPoint PPT Presentation
Open Source and Ontologies: Cross Domain, Cross Institutional Knowledge Reuse - Data Dictionary. Thesauri and Vocabularies (e.g., EEA Thesaurus) ... UMLS-SN: Medical Literature. SwissProt/Trembl: Protein Sequences. GKB: Pharmacogenomics ...
Data Dictionary. Thesauri and Vocabularies (e.g., EEA Thesaurus) ... UMLS-SN: Medical Literature. SwissProt/Trembl: Protein Sequences. GKB: Pharmacogenomics ...
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Automatic Information Retrieval from Bioinformatics Websites PowerPoint PPT Presentation
Automatic Information Retrieval from Bioinformatics Websites - SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...
SwissProt & TrEMBL (http://us.expasy.org/sprot/) SCOP (http://scop.mrc-lmb.cam.ac.uk/scop ... NCBI BLAST (http://www.ncbi.nlm.nih.gov/BLAST/) PSIPRED (http: ...
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Predicci PowerPoint PPT Presentation
Predicci - Clasificaci nes de m?todos de predicci n de estructura de ... Conocimiento biol gico MedLine, Swissprot, ... Centro activo, Mutantes, Dominios funcionales, ...
Clasificaci nes de m?todos de predicci n de estructura de ... Conocimiento biol gico MedLine, Swissprot, ... Centro activo, Mutantes, Dominios funcionales, ...
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INTRODUCCI PowerPoint PPT Presentation
INTRODUCCI - EMBL DNA sequence database. SWISSPROT i TREMBL. PIR, PDB. Cat logo de bases ... encontrar la misma secuencia o una lo m s similar posible ('DB homology search' ...
EMBL DNA sequence database. SWISSPROT i TREMBL. PIR, PDB. Cat logo de bases ... encontrar la misma secuencia o una lo m s similar posible ('DB homology search' ...
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GeneGrid and GridSphere PowerPoint PPT Presentation
GeneGrid and GridSphere - Targets for Protein & Antibody discovery. Cancer and Immunology ... Formatter. Eliminator. Eliminator. www.qub.ac.uk/escience The Queen's University of Belfast ...
Targets for Protein & Antibody discovery. Cancer and Immunology ... Formatter. Eliminator. Eliminator. www.qub.ac.uk/escience The Queen's University of Belfast ...
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Protein interactions and Pathways PowerPoint PPT Presentation
Protein interactions and Pathways - Protein interactions and Pathways Tutorial Wellcome trust summer school Jyoti Khadake Choose a protein Rad51/BRCA2 Find out the properties of protein from Uniprotkb ...
Protein interactions and Pathways Tutorial Wellcome trust summer school Jyoti Khadake Choose a protein Rad51/BRCA2 Find out the properties of protein from Uniprotkb ...
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Bioinformatics Resources and Tools on the Web: A Primer PowerPoint PPT Presentation
Bioinformatics Resources and Tools on the Web: A Primer - Much of this material comes from the Boston University course: BF527 ... Nematode: http://www.wormbase.org/ Nucleic Acids Research Database Issue ...
Much of this material comes from the Boston University course: BF527 ... Nematode: http://www.wormbase.org/ Nucleic Acids Research Database Issue ...
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Benchmarking%20Orthology%20in%20Eukaryotes PowerPoint PPT Presentation
Benchmarking%20Orthology%20in%20Eukaryotes - ... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
... analysis, examination of large COGs (might be split up) ... Tatusov et al., 'The COG database: an updated version includes eukaryotes', BMC Bioinformatics. ...
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Protein Sequence Databases, Peptides to Proteins, and Statistical Significance PowerPoint PPT Presentation
Protein Sequence Databases, Peptides to Proteins, and Statistical Significance - Title: Proteomics Technology and Protein Identification Author: Nathan Last modified by: Nathan Created Date: 12/6/2004 12:44:14 AM Document presentation format
Title: Proteomics Technology and Protein Identification Author: Nathan Last modified by: Nathan Created Date: 12/6/2004 12:44:14 AM Document presentation format
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Ontological%20Model%20for%20Colon%20Carcinoma:%20A%20Case%20Study%20for%20Knowledge%20Representation%20in%20Clinical%20Bioinformatics PowerPoint PPT Presentation
Ontological%20Model%20for%20Colon%20Carcinoma:%20A%20Case%20Study%20for%20Knowledge%20Representation%20in%20Clinical%20Bioinformatics - Title: Caveats on Knowledge Discovery and Data Mining (KDDM) for Bio-Terrorism Detection Author: Powerpt Last modified by: Barry Smith Created Date
Title: Caveats on Knowledge Discovery and Data Mining (KDDM) for Bio-Terrorism Detection Author: Powerpt Last modified by: Barry Smith Created Date
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Tools in bioinformatics PowerPoint PPT Presentation
Tools in bioinformatics - To provide students with practical knowledge of bioinformatics tools and their ... Mathematically, we use the hypergeometric distribution to compute the ...
To provide students with practical knowledge of bioinformatics tools and their ... Mathematically, we use the hypergeometric distribution to compute the ...
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Repetitive Beta Folds PowerPoint PPT Presentation
Repetitive Beta Folds - Repetitive Beta Folds Form, Function, and Properties Overview of Presentation Introduction to traditional beta-helix fold Structural and functional properties ...
Repetitive Beta Folds Form, Function, and Properties Overview of Presentation Introduction to traditional beta-helix fold Structural and functional properties ...
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Function preserves sequences PowerPoint PPT Presentation
Function preserves sequences - Second line has the start of the sequence (50 or 60 characters per line) ... There is also a Japanese database provider, DDBJ. Spring 2002 ...
Second line has the start of the sequence (50 or 60 characters per line) ... There is also a Japanese database provider, DDBJ. Spring 2002 ...
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Protein Sequence Databases PowerPoint PPT Presentation
Protein Sequence Databases - Protein Sequence Databases Nathan Edwards Department of Biochemistry and Mol. & Cell. Biology Georgetown University Medical Center
Protein Sequence Databases Nathan Edwards Department of Biochemistry and Mol. & Cell. Biology Georgetown University Medical Center
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Databases at UCSC PowerPoint PPT Presentation
Databases at UCSC - go - Gene ontology terms and term/gene associations. ... sangerGene (worm), bdgpGene (fly), sgdGene(yeast) play similar role to knownGene ...
go - Gene ontology terms and term/gene associations. ... sangerGene (worm), bdgpGene (fly), sgdGene(yeast) play similar role to knownGene ...
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Role%20of%20IT%20in%20Bioinformatics PowerPoint PPT Presentation
Role%20of%20IT%20in%20Bioinformatics - Role of IT in Bioinformatics. Naveena.Y. What is bioinformatics ? ... What was the reason behind the emergence of a separate domain, bioinformatics ? Brief History ...
Role of IT in Bioinformatics. Naveena.Y. What is bioinformatics ? ... What was the reason behind the emergence of a separate domain, bioinformatics ? Brief History ...
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Evalue Zvalue Comparison PowerPoint PPT Presentation
Evalue Zvalue Comparison - Astral SCOP database release 1.63: PDB sets with 10, 30, 50, 70, 90 and 100% ... Coverage': how much of the pairs within a SCOP class have E/Z TH ...
Astral SCOP database release 1.63: PDB sets with 10, 30, 50, 70, 90 and 100% ... Coverage': how much of the pairs within a SCOP class have E/Z TH ...
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Part I: Identifying sequences with PowerPoint PPT Presentation
Part I: Identifying sequences with - 'Done by most array manufacturers' Step-by-step approach: ... 6-Frame window. Public nucleotide databases are redundant. Sequencing errors ...
'Done by most array manufacturers' Step-by-step approach: ... 6-Frame window. Public nucleotide databases are redundant. Sequencing errors ...
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Fisica Computazionale applicata alle Macromolecole PowerPoint PPT Presentation
Fisica Computazionale applicata alle Macromolecole - Fisica Computazionale applicata alle Macromolecole Struttura e funzione delle proteine 1 Pier Luigi Martelli Universit di Bologna gigi@biocomp.unibo.it
Fisica Computazionale applicata alle Macromolecole Struttura e funzione delle proteine 1 Pier Luigi Martelli Universit di Bologna gigi@biocomp.unibo.it
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Annotation de s PowerPoint PPT Presentation
Annotation de s - Olivier Garsmeur Ga tan Droc Franc-Christophe Baurens Dominique This St phanie Sidib -Bocs Annotation de s quences g nomiques: g nes * Before to annotate the ...
Olivier Garsmeur Ga tan Droc Franc-Christophe Baurens Dominique This St phanie Sidib -Bocs Annotation de s quences g nomiques: g nes * Before to annotate the ...
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Processing Natural Language Comments in Biological Databases: Molecular Assemblies and Their Catalitic Functions. A Case Study PowerPoint PPT Presentation
Processing Natural Language Comments in Biological Databases: Molecular Assemblies and Their Catalitic Functions. A Case Study - Title: PowerPoint Presentation Last modified by: Uwe Reyle Created Date: 1/1/1601 12:00:00 AM Document presentation format: Bildschirmpr sentation
Title: PowerPoint Presentation Last modified by: Uwe Reyle Created Date: 1/1/1601 12:00:00 AM Document presentation format: Bildschirmpr sentation
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Chemoinformatics PowerPoint PPT Presentation
Chemoinformatics - Chemoinformatics P. Baldi, J. Chen, and S. J. Swamidass School of Information and Computer Sciences Institute for Genomics and Bioinformatics University of California ...
Chemoinformatics P. Baldi, J. Chen, and S. J. Swamidass School of Information and Computer Sciences Institute for Genomics and Bioinformatics University of California ...
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Bioinformatics Study of Biology in post-genomic era PowerPoint PPT Presentation
Bioinformatics Study of Biology in post-genomic era - Development of Bioinformatics and its application on Biotechnology By Wong Tak Hong
Development of Bioinformatics and its application on Biotechnology By Wong Tak Hong
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Databases at UCSC PowerPoint PPT Presentation
Databases at UCSC - The mrna table contains an entry for every mRNA, EST, and RefSeq. ... Select mrna.acc, tissue.name from mrna,tissue where mrna.tissue = tissue.id. Known Genes Data ...
The mrna table contains an entry for every mRNA, EST, and RefSeq. ... Select mrna.acc, tissue.name from mrna,tissue where mrna.tissue = tissue.id. Known Genes Data ...
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Hunting strategy of the bigcat PowerPoint PPT Presentation
Hunting strategy of the bigcat - Different conditions show different levels of gene expression for specific genes ... Pascalle Bijnens, Mat Daemen, Frank Stassen, Marc van Bilssen, Marten Hoffker. ...
Different conditions show different levels of gene expression for specific genes ... Pascalle Bijnens, Mat Daemen, Frank Stassen, Marc van Bilssen, Marten Hoffker. ...
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Protein Intrinsic Disorder, Cell Signaling and Alternative Splicing PowerPoint PPT Presentation
Protein Intrinsic Disorder, Cell Signaling and Alternative Splicing - Protein Intrinsic Disorder, Cell Signaling and Alternative Splicing Outline of Talk Examples of intrinsically disordered proteins Prediction of natural disordered ...
Protein Intrinsic Disorder, Cell Signaling and Alternative Splicing Outline of Talk Examples of intrinsically disordered proteins Prediction of natural disordered ...
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INDUS: A System for Information Integration and Knowledge Acquisition from Autonomous, Distributed a PowerPoint PPT Presentation
INDUS: A System for Information Integration and Knowledge Acquisition from Autonomous, Distributed a - Research supported in part by grants from the National Science Foundation (IIS ...
Research supported in part by grants from the National Science Foundation (IIS ...
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From genes to pathways or why we do data mining to couple microarray reporter info to known protein PowerPoint PPT Presentation
From genes to pathways or why we do data mining to couple microarray reporter info to known protein - From genes to pathways; or why we do data mining to couple ... Steal and smartly adapt a transcriptomics tool: GenMapp/Mappfinder. I will show some examples ...
From genes to pathways; or why we do data mining to couple ... Steal and smartly adapt a transcriptomics tool: GenMapp/Mappfinder. I will show some examples ...
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An%20Example PowerPoint PPT Presentation
An%20Example - For a query of N letters against a subject sequence of M letters, it ... Drosophila Drosophila genome proteins provided by Celera and Berkeley Drosophila ...
For a query of N letters against a subject sequence of M letters, it ... Drosophila Drosophila genome proteins provided by Celera and Berkeley Drosophila ...
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Database Integration PowerPoint PPT Presentation
Database Integration - Title: Database Integration Author: stefano spaccapietra Last modified by: IDEA RAYANE Created Date: 1/21/2003 12:44:24 PM Document presentation format
Title: Database Integration Author: stefano spaccapietra Last modified by: IDEA RAYANE Created Date: 1/21/2003 12:44:24 PM Document presentation format
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Taller de Bioinform PowerPoint PPT Presentation
Taller de Bioinform - Taller de Bioinform tica 16-19 de Octubre, Santiago, Chile Universidad de Chile Pontificia Universidad Cat lica de Chile CONICYT INSERM (Francia)
Taller de Bioinform tica 16-19 de Octubre, Santiago, Chile Universidad de Chile Pontificia Universidad Cat lica de Chile CONICYT INSERM (Francia)
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Identifying functional residues of proteins from sequence info PowerPoint PPT Presentation
Identifying functional residues of proteins from sequence info - given a set of relative entropies for each subfamily for each position ... to reduce noise, restrict to values that have above average positive relative entropy ...
given a set of relative entropies for each subfamily for each position ... to reduce noise, restrict to values that have above average positive relative entropy ...
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Data integration via XML PowerPoint PPT Presentation
Data integration via XML - Ela Hunt. John Wilson. Vangelis Pafilis. Inga Tulloch. http://xtect.cis.strath.ac.uk ... Hunt, Wilson, Pafilis and Tulloch, Glasgow ...
Ela Hunt. John Wilson. Vangelis Pafilis. Inga Tulloch. http://xtect.cis.strath.ac.uk ... Hunt, Wilson, Pafilis and Tulloch, Glasgow ...
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Course Sequence Analysis for Bioinformatics Master PowerPoint PPT Presentation
Course Sequence Analysis for Bioinformatics Master - Title: Finding Patterns in Protein Sequence and Structure Author: mathbio Last modified by: heringa Created Date: 6/9/2002 12:55:37 AM Document presentation format
Title: Finding Patterns in Protein Sequence and Structure Author: mathbio Last modified by: heringa Created Date: 6/9/2002 12:55:37 AM Document presentation format
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Sequence Alignment with GPU: Performance and Design Challenges PowerPoint PPT Presentation
Sequence Alignment with GPU: Performance and Design Challenges - Software Architecture (Smith-Waterman) Parallelization Strategy. Results. Outline. Motivation ... Learn the GPU architecture and its intricacies ...
Software Architecture (Smith-Waterman) Parallelization Strategy. Results. Outline. Motivation ... Learn the GPU architecture and its intricacies ...
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Portals and myGrid PowerPoint PPT Presentation
Portals and myGrid - a computer science pilot project working in the field of bioinformatics ... Taverna/Freefluo/MIR interface caters for expert user ...
a computer science pilot project working in the field of bioinformatics ... Taverna/Freefluo/MIR interface caters for expert user ...
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Interpretation of microarray expression data using ontology browsing PowerPoint PPT Presentation
Interpretation of microarray expression data using ontology browsing - Interpretation of microarray expression data using ontology browsing ... Change of DBMS from Berkeley DB to MySQL. To many annotations. ...
Interpretation of microarray expression data using ontology browsing ... Change of DBMS from Berkeley DB to MySQL. To many annotations. ...
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Interpretation of microarray expression data using ontology browsing PowerPoint PPT Presentation
Interpretation of microarray expression data using ontology browsing - Interpretation of microarray expression data using ontology browsing ... Change of DBMS from Berkeley DB to MySQL. To many annotations. ...
Interpretation of microarray expression data using ontology browsing ... Change of DBMS from Berkeley DB to MySQL. To many annotations. ...
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Combining rapid word searches with segmenttosegment alignment for sensitive similarity detection, do PowerPoint PPT Presentation
Combining rapid word searches with segmenttosegment alignment for sensitive similarity detection, do - 0 IENQMYLDR HENQSYLAR At1g20840 putative sugar transporter protein 860340 261 3. 0 IENQMYLDR IENQRSLRR At1g30510 putative ferredoxin NADP reductase 1228095 15 3 ...
0 IENQMYLDR HENQSYLAR At1g20840 putative sugar transporter protein 860340 261 3. 0 IENQMYLDR IENQRSLRR At1g30510 putative ferredoxin NADP reductase 1228095 15 3 ...
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