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Database and Analysis Tools. Kate Milova ... NCBI Entrez Gene UniGene Refseq & NT databases Blast Search Blast Software Unigene ID Gene ID GO ID ...
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Xenopus laevis (African clawed frog) 359,901. dbEST release 20 February 2004. EST lengths ... (South African Bioinformatics Institute) UniGene. Species UniGene ...
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... http://www.ncbi.nlm.nih.gov/blast/Blast.cgi nucleotide blast: UniGene infoGeoGene info Homo sapiens chromodomain helicase DNA binding protein 2 ...
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... HomoloGene HomoloGene HomoloGene is a resource of curated and calculated orthologs for genes as represented by UniGene or by annotation of genomic sequences ...
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An approach to gene discovery in ALS crops ... unclaimed. Unigenes. Seed Assembly. 4,647. Apogee ESTs 1976. Unigenes. 6,195. Apogee. ESTs ...
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... http://www.ncbi.nlm.nih.gov/blast/Blast.cgi nucleotide blast: UniGene infoGeoGene info Homo sapiens chromodomain helicase DNA binding protein 2 ...
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... NCBI Links to all of NCBI databases Guide to gene locations Map Viewer for navigation Excellent visual guide Links to HomoloGene / UniGene SNP and expression ...
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National Library of Medicine's search service. 16 million citations in MEDLINE ... complementary DNA (cDNA) library. UniGene data come from many cDNA libraries. ...
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Bioinformatics. Lab. Non-duplicate Unigenes Selection Protocol. Large-scale EST ... EST validation and duplicates removal. Probe delivery. Bioinformatics. Lab ...
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Stripe rust Haustorial cDNAs. Chuntao Yin, Xianming Chen, Scot Hulbert. Chuntao Yin ... Sequence more or make new preparation. Assemble unigenes/predict ...
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Web link to the Taxonomy Browser. Web link to the Genome Projects. Sunflower Genome Projects ... Querying of the Taxonomy Browser for all Asteraceae (Compositae) data ...
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Title: PowerPoint Presentation Author: Alexander Milov Last modified by: Aldo Created Date: 9/24/2002 11:47:14 PM Document presentation format: On-screen Show
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Title: PowerPoint Presentation Author: Alexander Milov Last modified by: Alexander Milov Created Date: 9/24/2002 11:47:14 PM Document presentation format
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Differentiation of hematopoietic cells Genome-wide gene expression SAGE (Serial Analysis of Gene Expression) SAGE & GLGI Overview SAGE tags match to many genes ...
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The structure is achieved by organizing the data according to a ... http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/Orthology.html. HomoloGene. HomoloGene ...
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Measures the steady state levels of mRNA in cell ... Micro Arrays and the Physiological State of the Cell. Micro array analysis. Micro array analysis ...
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DATABASE DI GENETICA E BIOLOGIA MOLECOLARE OMIM Online Mendelian Inheritance in Man LOCUSLINK curated sequence and descriptive information about genetic loci
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Puccinia graminis genome project
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NCBI GenBank Overview GenBank GenBank 13 ...
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Human Genome Project (http://genome.ucsc.edu/downloads.html) Gene Ontology Consortium ... Human Genome Project Date built: 28jun2002. URL:http://www.genome.ucsc.edu ...
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People with very diverse backgrounds in biology. Some people with ... science and biostatistics. Most people (will) have a favorite gene, protein, or disease ...
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Computational Analysis of Transcript Identification Using GenBank. Slides by Terry Clark ... D. Rowley. San Ming Wang. Terry Clark. Andrew Huntwork. Josef Jurek ...
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Expressed Sequence Tags are partial, single-pass sequences from either end of a ... EGAD. EST as tools (2) Alternative splicing. Expression profile comparison ...
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A Field Guide to GenBank and NCBI Molecular Biology Resources. slightly modified from ... human, mouse, rat, fruit fly, zebrafish, arabidopsis. Human model ...
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Title: NCBI Author: legend Last modified by: legend Created Date: 11/5/2001 3:46:15 AM Document presentation format:
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... 22138.60 1818881.00 24392.90 770587.00 25506.70 914954.00 25246.30 1883975.00 26052.80 1868684.00 22273.30 2209321.00 24297.60 2128920.00 26022.30 1845409.00 ...
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Genome Databases Genomics ... Gene Model http://genes.mit.edu/GENSCAN.html Hidden Markov models of gene structure Promoters E Additional Data Genomic DNA Assembled ...
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Detection of repetitive sequences (mostly untranslated) ... BLAST/QUASAR. search, clustering. Assembly, Consensus sequences. Visualization ...
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EST cleaning and clustering
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Title: Biology-Driven Clustering of Microarray Data Last modified by: Kevin Coombes Created Date: 9/30/1996 6:28:10 PM Document presentation format
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javaSean A Sequence Annotation Tool javaSean SEquence ANnotator Developed to allow literature curation of sequence-level features Used for creation of ARGS (annotated ...
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using computer algorithms and. computer databases. Genomics is the analysis of genomes. ... Example of how to access sequence data: HIV-1 pol. There are many ...
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Title: No Slide Title Author: Admin Last modified by: Admin Created Date: 7/15/2001 5:18:34 PM Document presentation format: On-screen Show Company
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Regulation/function in pathway/cellular state/phenotype ... Do I have a preconceived notion of how many clusters there should be? ...
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PDbase: A database of Parkinsons Diseaserelated genes and genetic variation using substantia nigra E
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melanoma.loximvi. melanoma.uacc577. melanoma.m14. melanoma.skmel2. melanoma.skmel5. melanoma.malme3m. melanoma.skmel28. melanoma.uacc62. nsclc.h322 ...
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Probe selection for Microarrays Considerations and pitfalls
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MGH-PGA. Genomic Analysis of Stress and Inflammation: Pseudomonas aeruginosa Infection ... Ausubel/Pier PGA Project. Contents of Slide Show: ...
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Analysis of High-throughput Gene Expression Profiling Why to Measure Gene Expression 1. Determines which genes are induced/repressed in response to a developmental ...
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... for further development/testing Earlier incorporation of toxicology in drug development pipeline Identification of biomarkers for ... Proteome Transcriptome ...
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Title: 1 Author: xy Last modified by: Lenovo User Created Date: 4/17/2006 9:03:07 AM Document presentation format: Company
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NCBI FieldGuide. A Field Guide. part 2. February 14, 2006 ... Primate division gbdiv pri[prop] EST division gbdiv est[prop] NCBI FieldGuide. Molecule Queries ...
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'Done by most array manufacturers' Step-by-step approach: ... 6-Frame window. Public nucleotide databases are redundant. Sequencing errors ...
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... Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicots; rosids; eurosids I; Rosales; Rosaceae; Maloideae; Malus. REFERENCE 1 (bases ...
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Double-Ended Shotgun Sequencing of PA14 Daniel G. Lee 10/30/02
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DNA/RNA Fingerprinting (RAP-PCR) Differential Display (DD-PCR) aCGH: array CGH (DNA level) ... Difference in DNA concentration on arrays (plate effects) ...
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ORFs, codon usage. What other types of information can be used? ... Use codon frequencies to compute probability of coding versus non-coding ...
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MR transgenic and wild type mice: hippocampus. Human dendritic cell lines with treatments ... MR transgenic hippocampus. HSD1 ko fat beds. Renin expression ...
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Single base differences in genomes between any two ... Ontology & Phylogeny. Evolution. SNPs in Biomedicine. Medical Conditions. Diagnosis and treatment ...
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Affymetrix: 60,000 human genes on GeneChips? Incyte: over 120,000 genes? ... Enhancer signals. Poly-A insertion sites. 9/18/09. U. Hilgert. Genes. Genomes. 24 ...
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Central Dogma of molecular biology The central dogma of molecular biology was first enunciated by Francis Crick in 1958[1] and re-stated in a Nature paper published ...
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Predicting phyico-chemical properties of protein (ProtParam) ... frog A chick A mouse A. mouse B chick B frog B. paralogs. orthologs orthologs. gene duplication ...
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Real Unix computers ... the output of one command is used as input for the next Link ... file_name (overwrite) * more file_name Display first n lines of ...
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Affymetrix: 60,000 human genes on GeneChips? Incyte: over 120,000 genes? ... Enhancer signals. Poly-A insertion sites. 9/3/09. U. Hilgert. Genes. Genomes. 27. 9/3/09 ...
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S. cerevisiae http://genome-www.stanford.edu/Saccharomyces ... Zebrafish, Halibut, Catfish, Shrimp, Trout, Salmon, Lumpfish, Carp. Fruitfly, Horn Fly, Mosquito ...
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Analysis of SAGE Data: An Introduction Kevin R. Coombes Section of Bioinformatics
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