Uniprot PowerPoint PPT Presentations
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UniProt. Eric Jain. Swiss Institute of Bioinformatics, Geneva ... foaf:name European Bioinformatics Institute /foaf:name foaf:nick EBI /foaf:nick ...
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Unifies PIR-PSD, Swiss-Prot, TrEMBL Protein Sequence ... UniRef: Non-redundant Reference Databases for ... Nomenclature: Gene/Protein Names (Nomenclature ...
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Importing GO terms from UniProt to a PGDB Markus Krummenacker Bioinformatics Research Group SRI International kr@ai.sri.com GO in EcoCyc Introduction GO (http ...
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... the Swiss Federal Government through the Federal Office of Education and Science. ... caBIG-ICR), and National Science Foundation grants for protein ...
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... are designed using Unified Modeling Language (UML) in combination with existing ... Design the system using class diagram in UML. Generate the code ...
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Vega. Ensembl. UniProt. myMart. MSD. BioMart API. JAVA. Perl ... Vega. dbSNP. Uniprot. MSD. Variety of small projects. In development. ArrayExpress. Wormbase ...
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UniProtKB/Swiss-Prot and ExPASy: Protein sequence databases and proteomics tools developed at the Swiss Institute of Bioinformatics Andrea Auchincloss (andrea ...
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This is our case study, in which we will collect data from biomedical sources and save to our cloud-based data store. ... medical repo for literatures Uniprot , ...
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University of Illinois at Urbana-Champaign. www.beespace.uiuc.edu ... Cat-1 Wormbase None. Cat-2 Wormbase None. CCKR-Human UniProt Cholecystokinin receptor ...
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... of the following is NOT an attribute of protein sequence databases like UniProt/NCBI: ... library with sequences at the same region of known substrates and ...
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Biological databases. http://cbio.uct.ac.za/training/courses ... UniProt-specific taxonomy database is Newt: http://www.ebi.ac.uk/newt. Example taxonomy entry ...
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Automatic Loading of Protein Sequence Annotation Data from UniProt to Pathway ... between variants due to human activity, variants within an organism, and ...
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aspartic acid - asp D. cysteine - cys C. glutamine - gln Q. glutamic acid - glu - E ... UniRef (UniProt NREF (Non-redundant REFerence) database at EBI, UK) ...
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Bridging Chemistry and Molecular Biology. Uniprot:P49841 ... E.g. Reaction, Molecular Association, Catalysis. Physical Entity ...
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Evolution by recent duplication and loss. Origin traceable to a single gene in LCA ... Creation and curation of PIRSFs. UniProt proteins. Preliminary ...
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http://www.uniprot.org/taxonomy/105399. Phylogenetic Characterization of Corals ... Fukami, H., Chen, C., Budd, A., Collins, A., Wallace, C., Chuang, Y., Chen, C. ...
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quick genome scan to find putative gene containing regions ... built with Fitch/Kitsch. Odds and bits. Mapping of Pdb - Uniprot - dmel proteins ...
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... or biological labels (human, mouse, Drosophila, yeast, worm and UniProt proteins) ... http://www.reactome.org/cgi-bin/skypainter2. SkyPainter ...
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HL7 PGx Vocabularies. Polypeptide. Mark Sharp. May 2006. UniProt ... 181,571 records. 166,616 with GN gene abbrev. ( 92%) 12,198 with species = human (7 ...
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Sequence high quality, large amount, constant flow, consistent ... PRINTS. ProDom. Integration: Data Fusion. InterPro 11,000 entries. Based on UniProt DB ...
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Deliverable 5.2: Definition of essential design characteristics of ... To upload to the workbench ... GoldenPath, RefSeq/GenBank, UniProt, PIR/NREF, ENZYME, etc. ...
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Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format
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Aoife McLysaght, Trinity College Dublin: I borrowed some of her s for ... unrooted trees. sequences. Bioinformatics 40400. Methods of Tree reconstruction ...
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Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format
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Amino-acids of two sequences can be aligned and we can easily count the number ... Check pairwise alignment. Protein structure prediction ...
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... Overview An integrated public resource of functional annotation of protein data Support genomic/proteomic research and scientific discovery Provide PIRSF ...
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... catalog of protein sequence and function, produced by EBI, PIR ... Institute (EBI), Hinxton, UK; ... of Bioinformatics (SIB), Geneva, Switzerland ...
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Publishing collaborations: Making databases more like journals ... Tagging and social bookmarking: New methods of annotation and navigation ...
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General structure of an amino acid. 20 standard amino acids each with a different R group ... monosaccharide biosynthesis. hexose metabolism. 21. Gene Ontology ...
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Proteomics Data Interoperation with Applications to Integrated Datamining and Enhanced Information Retrieval Andrew Smith Thesis Defense 8/25/2006
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... and protein bioinformatics (protein sequence ... Protein Bioinformatics. Mixture of proteins. Gel based seperation ... Protein Bioinformatics: Protein ...
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Learning and exploring Life science through the EBI reosurces and tools BIOQUEST workshop_2011 Vicky Schneider, EMBL-EBI Training Programme Project leader
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Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...
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Georgetown University Medical Center. Washington, DC 20007 ... Dictionary pre-tagging. F-measure: 0.412 (0.372 Precision, 0.462 Recall) ...
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Genome, Protein and Model Organism Databases
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Faculty of Life Science, TAU. Tel: 03-640 6840. E-mail: suezadva@tauex.tau.ac.il. Bioinfo. ... residues forbidden at the position. ...
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Investigating Genomes with Ensembl
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Getting GO: how to get GO for functional modeling
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Title: PowerPoint Presentation Author: blatter Last modified by: marie-claude blatter Created Date: 1/3/2005 2:21:26 PM Document presentation format
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Ontologies and Databases. Robert Stevens. From Purgatory.... To Heaven. Torment in Bioinformatics ... Semantic Understanding perhaps the most trouble ...
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PIR: Integrated Protein Informatics Resource. For Genomic ... PRO will be developed within the framework of the Open Biomedical Ontologies (OBO) Foundry. ...
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One UniRef90 entry groups sequences that have 90% or more identity across ... Swiss Institute of Bioinformatics (SIB) European Bioinformatics Institute (EMBL-EBI) ...
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BioTrac 25 Proteomics: Principles and Methods
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A Scale-Out RDF Molecule Store for Distributed Processing of Biomedical Data Andrew Newman ITEE, University of Queensland *
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Bookshelves. Francis Ouellette. Databases on the Internet. Information system. Query system ... It was a book. The Atlas of Protein Sequences ...
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Functional Analysis of PRC Proteomic Data. Public Dissemination of Analysis ... virus (RPV); Vaccinia (Copenhagen) VAC; Variola-India 1967 (smallpox virus) VAV ...
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EARLY CLINICAL DRUG ... 500 5,000 patients Registration, market introduction **New Drug Application Application for ... clinical data (Animal ...
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I keep six honest serving-men (They taught me all I knew); Their names are What , and Why, and When, And How, and Where, and ...
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Data retrieval BioMart Export View Data sets on ftp site MySQL queries of databases Perl API access to databases Data Mining in Ensembl with EnsMart Possible queries
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Bioinformatics for Proteomics Shu-Hui Chen ( ) Department of Chemistry National Cheng Kung University Protein Identification by Database Search PRIDE website ...
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Proteomic Resources 2D-Gel Image Databases Slide 49 PRIDE: centralized, standards compliant, public data repository for proteomics data Slide 51 ...
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One-stop shop' for biological data. Suitable for power biologists and bioinformaticians ... common currency' between two datasets. e. g. accession. Exportable ...
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Title: Slide 1 Author: Andreas Prokesch Last modified by: Hackl Hubert Created Date: 1/23/2004 7:41:20 AM Document presentation format: Bildschirmpr sentation (4:3)
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Protein Sequence Databases Nathan Edwards Department of Biochemistry and Mol. & Cell. Biology Georgetown University Medical Center
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Title: Proteomics Technology and Protein Identification Author: Nathan Last modified by: Nathan Created Date: 12/6/2004 12:44:14 AM Document presentation format
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Bioinformatics II http://biochem158.stanford.edu/bioinformatics.html Genomics, Bioinformatics & Medicine http://biochem158.stanford.edu/ Doug Brutlag
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