Web Design Miam PowerPoint PPT Presentations

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... mandatory descriptive information as previously described ... Study Design. Login. Biomaterials (samples, treatments) New. User Registration. Logical Flow ...

... to collect all the necessary experimental info from the bench-investigator, need: ... queries can be generated using CV terms. Various fields ...

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Review of microarray technology from data/database perspective ... 'An observed phenotype is specific for ... Rosetta Resolver (www.rosettabio.com) OpenSource ...

Alvis Brazma, Helen Parkinson, Ugis Sarkans, Mohammadreza ... Support on ontologies and CVs. Minimize free text, removal of synonyms. MIAME encouragement ...

Intro to the Clinical Research Chart (CRC) Hive / Cell Software Architecture ... Complex encoding; e.g., encoding MIAME in MAGE. Microarray data normalization ...

The MIAME (Minimum Information About a Microarray Experiment) ... Select the find 3 closest genes' option. IER2, FOS, JUN, have similar expression to nfkbia. ...

EMBRACE WP4 test-case proposal. Integrating promoter motif analysis ... (MIAME, MAGE-ML) Sequencing, CGH, epigenetics, computational analysis. Other. Genomes ...

ArrayDesign - Describes the design of an gene ... Development cycle may be too short. caGrid software made the installation process very easy, but not ...

Clones are related to Wells which are related to Spots on a Slide (Array) ... Wei Liang Miner, MIDAS. John Braisted Web MEV. Nirmal Bhagabhati MEV Statistical Analysis ...

MGED Ontology (MO) A resource for creation of MAGE-ML documents that are MIAME Compliant ... for translation between MAGE & MO. EBI ArrayExpress has plans for ...

System for automated ontology term proposals by ... Acknowledgements. Use Cases and Beta testers. Helen Parkinson. Tina Boussard-Hernandez. Pete Souda ...

... for Mouse Phenotyping Procedures MINI Minimum Information about a Neuroscience Investigation MINIMESS Minimal Metagenome Sequence Analysis Standard MINSEQE ...

SOP Associating Experiments Investigation Study Assay Construction Validation SOP SOP http ... Oil and Gas industry Egyptology specimen ...

Definition. Parent Class of term. Programmatic access ... of being accessed via standard network protocols such as but not limited to SOAP ...

Second summary in your annotated bibliography due today. Two pages. Format as suggested by prelim questions http://www.msu.edu/user/pdickson/cep901 ...

Enhanced functionality compared to the existing Sourceforge term tracker ... Term Tracker. New Mo Term tracker. MO TermTracker. Existing Functions. Propose new terms ...

Experiment = 1 Slide 2 Probes. Expression table is huge; must re-index frequently ... Probe Data. Studies, Experiments, and Replicates. Experiment. Study. Hyb ...

SOAP - Simple Object Access Protocol. Definition: SOAP is a lightweight XML based ... Written in Java, can accept a SOAP object generated in any language ...

Provide bridge to ontologies from other knowledge domains. What is an Ontology? ... Knowledge representation. Link to other domains (gene sequence annotation, ...

Load processed data or analysis results. End. RAD::StudyAnnotator::Module II ... In situs / Immunohistochemistry. Use Study and adapt RAD. GUS Components. Schema ...

Parole officer assigned for administrative convenience & focused mentoring ... Behaviourism: Software can provide immediate, consistent feedback ...

the experiments can be reproduced and the conclusions can be verified. the others can build on other's results ... Lev Soinov, Scientist (Postdoc Wellcome Trust) ...

Beehive: integrated microarray data workflow. Spotted microarray technology ... NIH Beehive data repository. http://stagbeetle.animal.uiuc.edu/Beehive3.0 ...

Implementation: Haridimos Kondylakis, Dimitris Manakanatas, Manos Kalaitzakis ... Institute of Molecular Biology & Biotechnology, FORTH-IMBB, Crete, Greece ...

Rage. 419. 4,821,028. 496. Mad. 2,787. 34,921,560. 565. Cage. 70. 864,724. 60. Aged. Database Usage (Mb) ... Clones are related to Wells which are related to ...

MGED Ontology (MO) A resource for creation of MAGE-ML ... Not an ontology of life but of experiments. Parts are applicable to describing experiments in general ...

Why do we need a database for toxicogenomics. How is it envisioned that this ... sequence is required to resolve discrepancies through automated bioinformatics ...

... file in a batch fashion from each submitted hybridization and ... Auto-Update Agent to be used in local installations to get the bug-fixes more efficiently ...

BioRDF Breakout Introduction Kei Cheung Mage-tab Michael Miller vOID Jun Zhao (remote) aTag Matthias Samwald (remote) Discussion All

... diagram. ArrayExpress ... pressure to bring system online quickly. Use object ... 15 000 000 000 data points. NetCDF. Data warehouse schema. What ...

Bioinformatics at NIAID-Biodefense Proteomics Administrative Resource Center. Peter ... CUPID. Core and Unique Protein Identification system. Acknowledgements ...

Provide bridge to ontologies from other knowledge domains. ... Knowledge representation. Link to other domains (gene sequence annotation, gene and protein roles, ...

Libics - Image Cytometry Standard (http://libics.sourceforge.net) ... Provide validation data sets in this format, e.g. SBS Image Library for algorithm comparison. ...

Main novelty is one of scale. hundreds or thousands of probes rather than tens ... Targets are normally prepared by oligo(dT) primed cDNA synthesis ...

'The IGF initiative was launched in 1999 to fund consortia to develop access to ... Ability to export MAGE-ML files. Satisfying demands of high-end journals ...

http://www.persistent.co.in. Gene Expression Analysis Using Microarrays. Dr Mushtaq Ahmed ... http://www.persistent.co.in. 2. Data Storage and Exchange ...

Gestion des alertes pour les accidents autoroutiers ... Au sein de PMI ou de grands groupes dans les services ' Direction Informatique ', ' Recherche et ...

Database modeling : UML (Rational Rose, Poseidon) Upload, integration tool: Perl/CGI or Java ... Oryza sativa. 1,281. 1,404. 240,578. Arabidopsis thaliana ...

Image file, fluorescence intensities, ... Processed data ... Julia Dewdney (End User/Feature Consultant) Chen Liu (Developer) ...

Senior Bioinformatics Scientist, Project Manager. Protein Information Resource (PIR) ... CUPID. Core and Unique Protein Identification system. Acknowledgements ...

Integrated Data Systems for Genomic Analysis Genomics and Bioinformatics for the Advancement of Clinical Sciences Thomas Jefferson University, Oct. 14, 2002

Gene Expression Analysis Using Microarrays Dr Mushtaq Ahmed Technology Incubation Division Persistent Systems Private Ltd Pune Topics Introduction Data Storage and ...

The EXPO Ontology: Describing Scientific Experiments Ross D. King Department of Computer Science University of Wales, Aberystwyth

Databases for Microarrays Vidhya Jagannathan SIB, Lausanne Overview Microarray data in a nutshell Why databases? What data to represent? What is a database?

How Ontologies Create Research Communities Barry Smith University at Buffalo http://ontology.buffalo.edu/smith *

... improve defense against bioterrorism and emerging/reemerging infectious diseases. ... stored in a process-oriented fashion based on modified Pedro class ...

Maintaining MO - adding new terms, synonyms ... Specifically, Data Transformation and Investigation terms. Generally, remaining terms in MO ...

Integrated data loading, browsing, editing and searching. ... the buttons opens up a panel/form in which full details can be browsed or edited ...

We present a prototype module aimed at providing graphical interaction between ... Scripts based on the trellis (lattice) graphics library of the R computing ...

PhD Bioinformatics for a proteomics approach to understanding the Schistosome tegument. ... Analysis by direct measurement of proteins in terms of their ...

Content: organism to biological macromolecule. Serves as a reference ontology ... cheating' is-a overloading, need a top level of ontology philosophical qu. ...

Microarrays

Assembly of genome from short sequences (in genome projects) ... that leads to a stop codon. in the middle of protein. Link to C. elegans Genetics Center ...

Taverna, myExperiment and caGrid: combining our strengths for caBIG