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THE NIST SANS USER RESEARCH

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Reference: B. Hammouda and D. Worcester, 'The DNA Denaturation Transition of DNA ... NSF-DMR, Steve Kline, Nitash Balsara, David Worcester. ... – PowerPoint PPT presentation

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Title: THE NIST SANS USER RESEARCH


1
THE NIST SANS USER RESEARCH
2
SANS RESEARCH TOPICS Boualem HammoudaNational
Institute of Standards and TechnologyCenter for
Neutron Research
1. SANS from Pluronics 2. Polymer Blend
Thermodynamics 3. Helix-to-Coil Transition in
DNA
3
1. SANS FROM PLURONICS
Pluronics are triblock copolymers
PEO-PPO-PEO PEO -CH2CH2O- is
hydrophillic PPO -CH2CH2(CH3)O- is hydrophobic
4
P85 Pluronic forms micelles at high temperatures
5
GUINIER PLOT
I(Q) I(0) exp(-Q2Rg2/3)
Guinier region
Guinier region
6
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SINGLE PARTICLE AND INTER-PARTICLE STRUCTURE
FACTORS
  • I(Q) (NA/V)VA2 (bA/vA-bB/vB)2 P(Q) S(Q)
  • NA number of particles, VA particle volume,
    V sample volume
  • (bA/vA-bB/vB)2 contrast factor
  • P(Q) single-particle structure factor
  • S(Q) inter-particle structure factor

P(Q) F(QR)2 3sin(QR)/(QR)3-cos(QR)/(QR)22
for sphere of radius R. P(Q)
2exp(-Q2Rg2)-1Q2Rg2/(Q2Rg2)2 for polymer of
radius of gyration Rg. S(Q) given by Percus
Yevick model for solution of hard spheres. S(Q)
given by the Random Phase Approximation model for
polymer mixtures.
8
Solution of Spheres
Percus Yevick Model
Solution of spheres
Single sphere
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10
Fit SANS Data to a Model of Concentrated
Core-Shell Particles
11
2. POLYMER BLENDS THERMODYNAMICS
  • SANS Intensity I(Q) dS(Q)/dW (b1/v1-b2/v2)2
    ST(Q)
  • Thermodynamics ST-1(Q0) (1/kBT)(d2G/df12)
    G Gibbs Free Energy.
  • The Random Phase Approximation
  • ST-1(Q) 1/(n1f1v1P(QRg1) 1/(n2f2v2P(QRg2)
    -2 c12(T)/v0

Mixed polymer blend
Phase separated blend
0.1 mm
1 nm
12
Gibbs Free Energy
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SANS FROM POLYMER BLEND MIXTURES
Polymers Polyethylbutylene / Polymethylbutylen
e hPEB -(C6H12)- / dPMB -(C5H5D5)- Molecular
Weights Mw44,100 g/mole Mw88,400
g/mole Volume Fractions fhPEB0.57 fdPMB0.43

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ZIMM PLOT
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18
1 nm
0.1 mm
19
3. HELIX-TO-COIL TRANSITION IN DNA
DNA is the basic building block for life. It
encodes for the synthesis of proteins.
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HELIX-TO-COIL TRANSITION IN DNA
UV
22
SANS
23
POROD PLOT I(Q) C/Qm

24
NONLINEAR LEAST-SQUARES FIT
Functional form I(Q) C/1(QL)m
Background C solvation intensity L
correlation length m Porod exponent
25
Solvation Intensity
26
Correlation Length
27
Porod Exponent
Reference B. Hammouda and D. Worcester, The DNA
Denaturation Transition of DNA in Mixed
Solvents, Biophysical Journal (accepted 2006).
28
POROD EXPONENTS
Porod region
1D object
2D object
3D object
1/Q1
1/Q2
1/Q4
1/Q1.67
1/Q2
1/Q3
1/Q3
1/Q4
MASS FRACTALS
SURFACE FRACTALS
29
CONCLUSIONS
-- The SANS technique is a valuable
characterization method. -- SANS has been
effective in complex fluids, polymers, biology,
etc. -- SANS can determine structures, phase
transitions, and morphology. -- The NG3 SANS
instrument at NIST gets over 150 users per year,
resulting in over 40 publications per year.
ACKNOWLEDGMENTS
NSF-DMR, Steve Kline, Nitash Balsara, David
Worcester.
CHECK IT OUT http//www.ncnr.nist.gov/programs/
sans/ http//www.ncnr.nist.gov/staff/hammou
da/ hammouda_at_nist.gov
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