Bioinformatics Research in Kims Lab at Indiana

1
Bioinformatics Research in Kims Lab at Indiana

• Sun Kim
• sunkim2atindiana.edu
• School of Informatics Center for Genomics and
  Bioinformatics
• Indiana University Bloomington
• I worked at DuPont Central Research from 1998 to
  2001, and at the University of Illinois at
  Urbana-Champaign from 1997 to 1998
• I received B.S and M.S and Ph.D in Computer
  Science from Seoul National University, Korea
  Advanced Institute of Science and Technology
  (KAIST) , and the University of Iowa
  respectively.

2
Research Interest

• Human disease cancer and asthma
• PlatCom A Platform for Computational Comparative
  Genomics
• Compath Pathway Analysis System
• Genome Annotation System
• BAG A Graph Theoretic Sequence Clustering
  Algorithm
• Genome sequence alignments segmental
  duplication
• Motif discovery framework
• Gene/Family Pattern Mining in Multiple Genomes
• The AMASS Genome Assembly Package

3
Methods

• String Pattern Matching Algorithms
• Machine Learning
• Combinatorial enumeration

4
Most significant discoveries or technology
developments

• PlatCom A Platform for Computational Comparative
  Genomics
• Compath Pathway Analysis System
• Genome Annotation System
• BAG A Graph Theoretic Sequence Clustering
  Algorithm
• Gene/Family Pattern Mining in Multiple Genomes
• Motif discovery frameworks
• 1. iGibbs A Motif Discovery Framework for Gibbs
  Sampling Algorithm (Proteins, vol 66, 2007, with
  Dalkilic) at http//bio.informatics.indiana.edu/pr
  ojects/igibbs/
• 2. ARCS An Aggregated Related Column Scoring
  Scheme for Aligned Sequences (Bioinformatics,
  Oct 2006) at
• http//bio.informatics.indiana.edu/projects/ar
  cs/