Checkpoint 2 Predicting Function of SNPs

1
Checkpoint 2Predicting Function of SNPs

• Corey Harada
• Advisor Eleazar Eskin

2
Progress

• Creation of a visualization tool to display
  associations.
• Program to associate phenotypes and SNPs.

3
Program

• Program is slow
• Runs on very large amounts of data.
• Uses multiple programs (Ruby, R, Python) wasted
  time saving and loading data.

4
Other considerations

• Evaluating correctness
• Need to run program on existing results and
  compare with normal selection.