Chapter 9~ Cellular Respiration: Harvesting Chemical Energy

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• Chapter 9 Cellular Respiration Harvesting
  Chemical Energy

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Whats thepoint?
The pointis to makeATP!
ATP
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Principles of Energy Harvest

• Catabolic pathway v
  Fermentation vCellular
  Respiration C6H12O6 6O2 ---gt 6CO2 6H2O E
  (ATP heat)

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Harvesting stored energy

• Glucose is the model
• catabolism of glucose to produce ATP

RESPIRATION making ATP ( some heat)by burning
fuels in many small steps
ATP
enzymes
CO2 H2O heat
CO2 H2O ATP ( heat)
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How do we harvest energy from fuels?

• Digest large molecules into smaller ones
• break bonds move electrons from one molecule to
  another
• as electrons move they carry energy with them
• that energy is stored in another bond, released
  as heat or harvested to make ATP

loses e-
gains e-
oxidized
reduced


e-
e-
redox
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How do we move electrons in biology?

• Moving electrons in living systems
• electrons cannot move alone in cells
• electrons move as part of H atom
• move H move electrons

oxidation
reduction
e-
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Coupling oxidation reduction

• REDOX reactions in respiration
• release energy as breakdown organic molecules
• break C-C bonds
• strip off electrons from C-H bonds by removing H
  atoms
• C6H12O6 ? CO2 the fuel has been oxidized
• electrons attracted to more electronegative atoms
• in biology, the most electronegative atom?
• O2 ? H2O oxygen has been reduced
• couple REDOX reactions use the released energy
  to synthesize ATP

O2
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Oxidation reduction

• Oxidation
• adding O
• removing H
• loss of electrons
• releases energy
• exergonic

• Reduction
• removing O
• adding H
• gain of electrons
• stores energy
• endergonic

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Moving electrons in respiration
like in the bank

• Electron carriers move electrons by shuttling H
  atoms around
• NAD ? NADH (reduced)
• FAD2 ? FADH2 (reduced)

reducing power!
NADH
H
carries electrons as a reduced molecule
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Oxidizing agent in respiration

• NAD (nicotinamide adenine dinucleotide)
• Removes electrons from food (series of reactions)
• NAD is reduced to NADH
• Enzyme action dehydrogenase
• Oxygen is the eventual e- acceptor

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Electron transport chains

• Electron carrier molecules (membrane proteins)
• Shuttles electrons that release energy used to
  make ATP
• Sequence of reactions that prevents energy
  release in 1 explosive step
• Electron route food---gt NADH ---gt electron
  transport chain ---gt oxygen

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Cellular respiration overview

• (anaerobic)
• 1.Glycolysis cytosol degrades glucose into
  pyruvate
• (aerobic)
• Pyruvate oxidation
• 2.Krebs Cycle mitochondrial matrix pyruvate
  into carbon dioxide
• 3.Electron Transport Chain inner membrane of
  mitochondrion electrons passed to oxygen

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Whats thepoint?
The pointis to makeATP!
ATP
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Glycolysis

• Breaking down glucose
• glyco lysis (splitting sugar)
• ancient pathway which harvests energy
• where energy transfer first evolved
• transfer energy from organic molecules to ATP
• still is starting point for ALL cellular
  respiration
• but its inefficient
• generate only 2 ATP for every 1 glucose
• occurs in cytosol

In thecytosol?Why doesthat makeevolutionaryse
nse?
Thats not enoughATP for me!
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Evolutionary perspective
Enzymesof glycolysis arewell-conserved

• Prokaryotes
• first cells had no organelles
• Anaerobic atmosphere
• life on Earth first evolved without free oxygen
  (O2) in atmosphere
• energy had to be captured from organic molecules
  in absence of O2
• Prokaryotes that evolved glycolysis are ancestors
  of all modern life
• ALL cells still utilize glycolysis

You meanwere related?Do I have to invitethem
over for the holidays?
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Overview
glucose C-C-C-C-C-C

• 10 reactions
• convert glucose (6C) to 2 pyruvate (3C)
• produces 4 ATP 2 NADH
• consumes2 ATP
• net yield 2 ATP 2 NADH

fructose-1,6bP P-C-C-C-C-C-C-P
DHAP P-C-C-C
G3P C-C-C-P
pyruvate C-C-C
DHAP dihydroxyacetone phosphate G3P
glyceraldehyde-3-phosphate
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Glycolysis summary
endergonic invest some ATP
ENERGY INVESTMENT
-2 ATP
G3P C-C-C-P
exergonic harvest a little ATP a little NADH
ENERGY PAYOFF
4 ATP
like in the bank

• net yield
• 2 ATP
• 2 NADH

NET YIELD
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Substrate-level Phosphorylation

• In the last steps of glycolysis, where did the P
  come from to make ATP?
• the sugar substrate (PEP)

• P is transferred from PEP to ADP
• kinase enzyme
• ADP ? ATP

ATP
I get it! The Pi camedirectly fromthe substrate!
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Energy accounting of glycolysis
glucose ? ? ? ? ? pyruvate
6C
3C
2x
All that work! And thats all I get?
Butglucose hasso much moreto give!

• Net gain 2 ATP 2 NADH
• some energy investment (-2 ATP)
• small energy return (4 ATP 2 NADH)
• 1 6C sugar ? 2 3C sugars

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Is that all there is?

• Not a lot of energy
• for 1 billon years this is how life on Earth
  survived
• no O2 slow growth, slow reproduction
• only harvest 3.5 of energy stored in glucose
• more carbons to strip off more energy to harvest

glucose ? ? ? ? pyruvate
6C
Hard wayto makea living!
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But cant stop there!
raw materials ? products
Glycolysis glucose 2ADP 2Pi 2 NAD ? 2
pyruvate 2ATP 2NADH

• Going to run out of NAD
• without regenerating NAD, energy production
  would stop!
• another molecule must accept H from NADH
• so NAD is freed up for another round

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How is NADH recycled to NAD?
without oxygen anaerobic respiration fermentation

with oxygen aerobic respiration

• Another molecule must accept H from NADH

pyruvate
NAD
H2O
CO2
NADH
NADH
O2
acetaldehyde
NADH
acetyl-CoA
NAD
NAD
lactate
lactic acidfermentation
which path you use depends on who you are
Krebs cycle
ethanol
alcoholfermentation
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Fermentation (anaerobic)

• Bacteria, yeast

back to glycolysis??

• beer, wine, bread

• Animals, some fungi

back to glycolysis??

• cheese, anaerobic exercise (no O2)

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Alcohol Fermentation
bacteria yeast
back to glycolysis??

• Dead end process
• at 12 ethanol, kills yeast
• cant reverse the reaction

Count thecarbons!
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Lactic Acid Fermentation
animalssome fungi
?
back to glycolysis??

• Reversible process
• once O2 is available, lactate is converted back
  to pyruvate by the liver

Count thecarbons!
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Pyruvate is a branching point

• Pyruvate

fermentation anaerobicrespiration
mitochondria Krebs cycle aerobic respiration
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Glycolysis is only the start

• Glycolysis
• Pyruvate has more energy to yield
• 3 more C to strip off (to oxidize)
• if O2 is available, pyruvate enters mitochondria
• enzymes of Krebs cycle complete the full
  oxidation of sugar to CO2

3C
1C
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Oxidation of pyruvate

• Pyruvate enters mitochondrial matrix
• 3 step oxidation process
• releases 2 CO2 (count the carbons!)
• reduces 2 NAD ? 2 NADH (moves e-)
• produces 2 acetyl CoA
• Acetyl CoA enters Krebs cycle

3C
2C
1C
Wheredoes theCO2 go? Exhale!
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Krebs cycle
1937 1953

• aka Citric Acid Cycle
• in mitochondrial matrix
• 8 step pathway
• each catalyzed by specific enzyme
• step-wise catabolism of 6C citrate molecule
• Evolved later than glycolysis
• does that make evolutionary sense?
• bacteria ?3.5 billion years ago (glycolysis)
• free O2 ?2.7 billion years ago (photosynthesis)
• eukaryotes ?1.5 billion years ago (aerobic
  respiration organelles ? mitochondria)

Hans Krebs 1900-1981
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Count the carbons!
acetyl CoA
pyruvate
citrate
oxidationof sugars
This happens twice for each glucose molecule
x2
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Count the electron carriers!
acetyl CoA
pyruvate
citrate
reductionof electroncarriers
This happens twice for each glucose molecule
x2
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Whassup?
So we fully oxidized glucose C6H12O6 ? CO2
ended up with 4 ATP!
Whats the point?
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Electron Carriers Hydrogen Carriers

• Krebs cycle produces large quantities of electron
  carriers
• NADH
• FADH2
• go to Electron Transport Chain!

ADP Pi
ATP
Whats so important about electron carriers?
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Energy accounting of Krebs cycle
pyruvate ? ? ? ? ? ? ? ? ? CO2
3C
ATP

• Net gain 2 ATP
• 8 NADH 2 FADH2

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Value of Krebs cycle?

• If the yield is only 2 ATP then how was the Krebs
  cycle an adaptation?
• value of NADH FADH2
• electron carriers H carriers
• reduced molecules move electrons
• reduced molecules move H ions
• to be used in the Electron Transport Chain

like in the bank
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Krebs Cycle review

• If molecular oxygen is present.
• Each pyruvate is converted into acetyl CoA (begin
  w/ 2) CO2 is released NAD ---gt
  NADH coenzyme A (from B vitamin),
  makes molecule very reactive
• From this point, each turn 2 C atoms enter
  (pyruvate) and 2 exit (carbon dioxide)
• Oxaloacetate is regenerated (the cycle)
• For each pyruvate that enters 3 NAD reduced to
  NADH 1 FAD reduced to FADH2 (riboflavin,
  B vitamin) 1 ATP molecule

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ATP accounting so far

• Glycolysis ? 2 ATP
• Krebs cycle ? 2 ATP
• Life takes a lot of energy to run, need to
  extract more energy than 4 ATP!

Theres got to be a better way!
I need a lotmore ATP!
A working muscle recycles over 10 million ATPs
per second
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There is a better way!

• Electron Transport Chain
• series of proteins built into inner
  mitochondrial membrane
• along cristae
• transport proteins enzymes
• transport of electrons down ETC linked to pumping
  of H to create H gradient
• yields 36 ATP from 1 glucose!
• only in presence of O2 (aerobic respiration)

Thatsounds morelike it!
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Remember the Electron Carriers?
glucose
Krebs cycle
Glycolysis
G3P
8 NADH 2 FADH2
2 NADH
Time tobreak openthe piggybank!
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Electron Transport Chain
Building proton gradient!
NADH ? NAD H
intermembranespace
H
H
H
innermitochondrialmembrane
H ? e- H
C
e
Q
e
H
e
FADH2
FAD
H
NADH
2H
O2
H2O

NAD
NADH dehydrogenase
cytochromebc complex
cytochrome coxidase complex
mitochondrialmatrix
What powers the proton (H) pumps?
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Electron Transport Chain
Intermembrane space
C
Q
NADH dehydrogenase
cytochromebc complex
cytochrome coxidase complex
Mitochondrial matrix
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Stripping H from Electron Carriers

• Electron carriers pass electrons H to ETC
• H cleaved off NADH FADH2
• electrons stripped from H atoms ? H (protons)
• electrons passed from one electron carrier to
  next in mitochondrial membrane (ETC)
• flowing electrons energy to do work
• transport proteins in membrane pump H (protons)
  across inner membrane to intermembrane space

H
H
H
TA-DA!! Moving electronsdo the work!
ADP Pi
ATP
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But what pulls the electrons down the ETC?
electronsflow downhill to O2
oxidative phosphorylation
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Electrons flow downhill

• Electrons move in steps from carrier to carrier
  downhill to oxygen
• each carrier more electronegative
• controlled oxidation
• controlled release of energy

make ATPinstead offire!
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We did it!
proton-motive force

• Set up a H gradient
• Allow the protons to flow through ATP synthase
• Synthesizes ATP
• ADP Pi ? ATP

ATP
Are wethere yet?
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Chemiosmosis

• The diffusion of ions across a membrane
• build up of proton gradient just so H could flow
  through ATP synthase enzyme to build ATP

Chemiosmosis links the Electron Transport Chain
to ATP synthesis
So thatsthe point!
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Peter Mitchell
1961 1978

• Proposed chemiosmotic hypothesis
• revolutionary idea at the time

proton motive force
1920-1992
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Intermembrane space
Pyruvate from cytoplasm
Inner mitochondrial membrane
H
H
Electron transport system
C
Q
NADH
H
e-
2. Electrons provide energy to pump protons
across the membrane.
1. Electrons are harvested and carried to the
transport system.
e-
Acetyl-CoA
NADH
e-
H2O
e-
Krebs cycle
3. Oxygen joins with protons to form water.
1
FADH2
O2
2
O2

2H
H
CO2
ATP
H
ATP
ATP
4. Protons diffuse back indown their
concentrationgradient, driving the synthesis of
ATP.
ATP synthase
Mitochondrial matrix
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Taking it beyond

• What is the final electron acceptor in Electron
  Transport Chain?

O2

• So what happens if O2 unavailable?

• ETC backs up
• nothing to pull electrons down chain
• NADH FADH2 cant unload H
• ATP production ceases
• cells run out of energy
• and you die!

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Whats thepoint?
The pointis to makeATP!
ATP
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Review Cellular Respiration

• Glycolysis 2 ATP (substrate-level
  phosphorylation)
• Krebs Cycle 2 ATP
  (substrate-level phosphorylation)
• Electron transport oxidative phosphorylation
  2 NADH (glycolysis) 6ATP
  2 NADH (acetyl CoA) 6ATP 6 NADH
  (Krebs) 18 ATP 2 FADH2 (Krebs) 4
  ATP
• 38 TOTAL ATP/glucose
  
  

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Cellular Respiration Other Metabolites
Control of Respiration
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Beyond glucose Other carbohydrates

• Glycolysis accepts a wide range of carbohydrates
  fuels

• ex. starch, glycogen

• ex. galactose, fructose

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Beyond glucose Proteins
2C sugar carbon skeleton enters glycolysis
or Krebs cycle at different stages
amino group waste product excreted as ammonia,
urea, or uric acid
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Beyond glucose Fats
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Metabolism

• Coordination of chemical processes across whole
  organism
• digestion
• catabolism when organism needs energy or needs
  raw materials
• synthesis
• anabolism when organism has enough energy a
  supply of raw materials
• by regulating enzymes
• feedback mechanisms
• raw materials stimulate production
• products inhibit further production

CO2
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Control of Respiration

• Feedback Control

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Feedback Inhibition

• Regulation coordination of production
• final product is inhibitor of earlier step
• allosteric inhibitor of earlier enzyme
• no unnecessary accumulation of product
• production is self-limiting

A ? B ? C ? D ? E ? F ? G
X
allosteric inhibitor of enzyme 1
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Respond to cells needs

• Key point of control
• phosphofructokinase
• allosteric regulation of enzyme
• why here?
• cant turn back step before splitting glucose
• AMP ADP stimulate
• ATP inhibits
• citrate inhibits

Why is this regulation important?
Balancing act availability of raw materials vs.
energy demands vs. synthesis
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A Metabolic economy

• Basic principles of supply demand regulate
  metabolic economy
• balance the supply of raw materials with the
  products produced
• these molecules become feedback regulators
• they control enzymes at strategic points in
  glycolysis Krebs cycle
• levels of AMP, ADP, ATP
• regulation by final products raw materials
• levels of intermediates compounds in pathways
• regulation of earlier steps in pathways
• levels of other biomolecules in body
• regulates rate of siphoning off to synthesis
  pathways

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A Metabolic economy

• Basic principles of supply demand regulate
  metabolic economy
• balance the supply of raw materials with the
  products produced
• these molecules become feedback regulators
• they control enzymes at strategic points in
  glycolysis Krebs cycle
• levels of AMP, ADP, ATP
• regulation by final products raw materials
• levels of intermediates compounds in pathways
• regulation of earlier steps in pathways
• levels of other biomolecules in body
• regulates rate of siphoning off to synthesis
  pathways

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Got the energy Ask Questions!!