Title: Writing The Biomedical Manuscript: A Systematic Approach
1Writing The Biomedical ManuscriptA Systematic
Approach
Christopher Dant Stanford Medical School
2Manuscript Writing
- Part I
- About writing and what makes a good paper
- Parts of a manuscript
- Figures and tables
- Writing strategies
- Part II
- Essentials of good writing
- Sentences-Paragraphs
- Common writing mistakes
3Medical Communications Today
- Medical science becoming increasing specialized
- 1976 5,000 biomedical journals, only in
libraries - 2006 gt17,000 biomedical journals, electronic on
internet - Subspecialties and new vocabularies has increased
dramatically over past 20 years - Biomedical research moving to interdisciplinary
initiativesThe NIH Roadmap - Thus, readership increasingly specialized yet
interdisciplinary, requiring an approach that is
common, clear, simplified. - We must strive to make our articles increasingly
reader friendly and cross-discipline in
language - Dr. Jerome Kassirer, Former Editor, NEJM
4A Recognized Problem
- There is no form of prose more difficult to
understand and more tedious to read than the
average scientific paper!
-Dr. Francis Crick, 1994The Astonishing
Hypothesis
5The Avoidable Downfall
- Your research
- Carefully planned
- Novel
- Flawlessly designed and executed
- Your paper
- Poorly designed and writtenrejected or delayed
- The loss or delay of disseminating important
critical information to the science community
6Journal Editors Agree
- Good writing signals clear thinking and an
organized approach - Clear direct English and logical, cohesive,
organized writing are key to acceptance - Even the most novel and well-constructed study
will be rejected if the writing is flawed
7Writing is an Essential Skill
- The ability to communicate clearly and precisely
through the written word is an essential skill
for medical researchers - Delayed publications and denial of funding
because of poorly written manuscripts and grants
continues to plague researchers - The career of a researcher can depend heavily on
this skill
8Key Difficulties
- Many papers are poorly constructed and written
- Some scientists have not learned good manuscript
writing techniques - Others do not enjoy writing, and do not take the
time or effort to ensure that the prose is clear
and logical. - Authors are typically so familiar with the
material that it is difficult to step back and
view it from the point of view of a reader not
familiar with the science - Peer review is therefore critical
9Manuscript Deficiencies
- 57 articles evaluated to Emerg Med28 accepted,
29 rejected/pending - Of these 29
- Ambiguous methods 77
- Ambiguous results 68
- Conclusions not warranted by data 72
- Poor referencing 56
- Inadequate study design description 51
- Unclear tables 49
- Overly long discussion 49
- Inadequate definition of terms 49
- Deficiencies in manuscript preparation are more
frequent than mistakes in study design and
execution. Specific trainingin manuscript
preparation is indicated. - Taylor and Brown, Emerg Med 13(4)444-50, 2001
10Top 10 Reasons Manuscripts Rejected
Avoidable
- Wrong journal, format, preparation
- Disorganized study design
- Defective tables, figures
- Poor organization throughout, writing, spelling
- No hypothesis or problem statement
- No or insufficient conclusion
- Overinterpretation of results
- Article unfocused, too verbose and long
- Inappropriate statistical methods methods not
sufficient to repeat study - Poorly written abstract/title
Pierson DJ, Respiratory Care 49(10), 2004
Byrne DW, Publishing Medical Research Papers,
Williams and Wilkins, 1998
11The Paper
- Writing and editing the paper is the last step in
the research process - The paper tells the story from study inception,
through data collection, statistical analysis,
findings and and discussion - The process of writing the paper should be
analogous to the research processit requires
attention to detail, time, and revision
12Manuscript Reviews
Editor Title Abstract Headings References Tables
/Figures Read Through
Appropriate to journal? Conform to guidelines?
Editor Reports Summary of peer reviews Summary of
editors review
13Start with Outline
- Outline each segment of the paper using
traditional outline I, II, III, A, B, 1, 2, a - Forces logical thought and order
- Eliminates unorganized thinking and writing
- Uncovers flaws in arguments
- Reduces wordiness
- Makes writing easier
- Include your draft figures, tables
14Outline
- Introduction
- Zinc plays a critical role in biochemical
functions in cells - Mitochondrial function (Billings)
- Cell motility (Jones, Smith)
- Zn concentrations affected by physiological
changes in pregnancy (Billings) - Zn deficiency increases spontaneous abortions and
pregnancy complications - Rhesus monkeys (Putter)
- White rats (Michaels, Reiss)
- In humans, the role of Zn deficiency in pregnancy
outcome is unclear (Brown) - Objective we evaluated whether Zn
supplementation during pregnancy is associated
with changes in birth outcomes.
15Journal Editor Whats A Good Manuscript?
- Title descriptive and specific
- Abstract descriptive, specific, and correct
length - Introduction and background short and strong
- Research question clearly stated
- Literature cited is comprehensive and relevant
- Methods descriptive enough to be replicated
appropriate statistical analyses - Figures and Tables stand on their own, support
conclusions, well constructed - Citations relevant to topic
- Discussion within boundaries of findings
demonstrate how findings have helped resolve
stated problem implications and future work
addressed - Writing clear, terse, logical
- Manuscript follows journal guidelines
16The Title
17The Title
- First reviewed by Journal Editors before abstract
- Short
- Specific, Relevant, Descriptive
- Write lastyour findings and conclusions may
alter your title
18Title Ask Yourself
- What is the single most important point of this
study? - How would I tell my colleague, in one short
descriptive sentence - whats this study about?
- A descriptive, specific title perfectly framing
your study will be apparent only after youve
written the paper and abstract. - Start with a short descriptive working title
19Unnecessary Title Phrases
- A Study of A Study to Determine Results of
- An Innovative Method
- Contributions to (of)
- Investigations on (concerning, about)
- Observations on
- A Trial Comparing
20TitleSpecific Descriptive
- A Study Involving Medical Imaging with Genetic
Patients and Turners Syndrome - MRI Brain Imaging in Children With Turners
Syndrome and Other X Chromosome Abnormalities - Nerve Growth Factors and Sodium Channels in
Pancreatic Cells - Nerve Growth Factor Increases Sodium Channel
Expression in Pancreatic (Beta) Cells
Implications for Insulin Secretion
21TitleSpecific Descriptive
- Down SyndromeWhere we are today A Review
- Down Syndrome Genetic, Behavior, and Functional
Neuroimaging Research 2000-2006 - Aldosterone and Heart Failure
- Aldosterone Plasma Concentrations Increase with
Severity of Congestive Heart Failure - A study of MI in older Americans 1994-1999
- Epidemiological survey of MI in
Community-Dwelling American Males Over 65 years - Lazarus arise! Life and Death Issues in Intensive
Care - End-of-Life Care Issues for Critically Ill
Patients in Intensive Care Hospitals
22TitleSpecific Descriptive
- Hepatitis C virus associated membranoproliferative
glomerulonephritis A tale of Mice and Men - Membranoproliferative Glomerulonephritis
Associated with Hepatitis C Virus in F39(b) Nude
Mice Applicability to Humans - Isolated unilateral tubular sclerosis-associated
severe late-stage renal cystic disease in
neonates - Severe, Late-Stage Renal Cystic Disease in
Neonates Associated with Isolated Unilateral
Tubular Sclerosis - Drug trial comparing systemic beta blocker with
calcium-channel blocker in CHF - Open-label Comparison of Altenolol and
Propranolol versus Nifedipine in Patients with
CHF Beta Blocker and Calcium-Channel Blocker
Mechanisms
23Dont Stack Adjectives
- Female but not male serotonin reuptake
transporter (5-HTT) model knockout mice exhibit
bladder instability Implications - 5-HTT female (not male) knockout mice have
unstable bladders Implications for Stress
Urinary Incontinence Treatment
24Good TitlesSentences
- Intellectual impairments occur in children with
blood lead concentrations above 10 mg per
deciliter - Increased 17b-estradiol suppresses PTHrP gene
expression in breast cancer cell lines - Spinal cord stimulation attenuates visceromotor
reflexes in a rat model of post-inflammatory
colonic hypersensitivity - Rhinovirus challenge decreases antioxidant
enzymes in respiratory epithelial cells
25Not Sentences But Good Titles
- Comparison of MRI and CT for Detection of Acute
Intracerebral Hemorrhage - Extracranial Thrombotically Active Carotid Plaque
as a Risk for Ischemic Stroke - Annual Revaccination Against Influenza and
Mortality Risk in Community-Dwelling Elderly
Persons - Effect of Antihypertensive Agents on
Cardiovascular Events in Patients With Coronary
Disease and Normal Blood Pressure. The CAMELOT
Study A Randomized Controlled Trial
26The Abstract
27The Abstract
- 1st Impression to journal editor and the reader!
- Follow the Journals Guidelines
- Most abstracts are often too long 250 words
Cannot upload your paper! - Structure it (outline it)
- The abstract is the single most important part
of a manuscript, yet the most often poorly
written -JAMA Editor
28The Abstract
- First looked at by editors/sometimes only thing
read by readers - Sometimes only part available electronicallyKEY
words! - Summarizes the main points succinctly
- Background/Significance
- Objective
- Study design, method
- Primary germane results
- Principal conclusions, implications
- Do NOT be vaguebe substantive and brief
- NOT The implications are summarized
- INSTEAD Summarize the implications!
29Abstract
- Emphasize methods, main results, and conclusion
- Introduction/purpose 1 short sentence
- Put objective as imperative style
- Objective To evaluate whether zinc
supplementation during pregnancy affects infant
birth measures. - Methods, Results 2-4 sentences
- Conclusion 1-2 sentences
30Structured Abstract
- ContextSummarize the study rationale and provide
clinical (or other) reason for the study
question. - ObjectiveState the purpose or question asked. If
more than one objective, state primary objective
and key secondary objectives. - DesignDescribe basic design, including relevant
details. - SettingGeneral community, primary care,
hospital, etc. - Patient or other populationdescribe
demographics, disorders, inclusion/exclusion
criteria, etc. - Interventionsname, dose, dosage
- Main outcome measure(s)
- Results
- Conclusions
31The Effect of Zinc Supplementation on Pregnancy
Outcome
- ObjectiveTo evaluate whether zinc
supplementation during pregnancy affects infant
birth measures. - DesignRandomized, double-blind,
placebo-controlled trial. - SettingOutpatient clinic at University of
Alabama at Birmingham. - Patients580 healthy African-American pregnant
women with plasma zinc levels below normal
levels, randomized at 19 weeks gestational age
and divided by median body mass of 26 kg/m2 into
placebo and zinc supplement groups. - InterventionWomen receiving a non-zinc-containing
prenatal vitamin tablet were randomized to 25
mg/day zinc or placebo. - Outcome MeasuresBirth weight, gestational age at
birth, head circumference at birth. - ResultsInfants from zinc supplement group had
greater birth weight (plt0.01) and head
circumference (p0.02) than those in placebo
group. Women with body mass 26 kg/m2 had
infants with significantly higher birth weights
(median 245 g, plt0.001) and larger head
circumference (median 0.7 cm, p0.003). - ConclusionsDaily zinc supplementation in women
with low plasma zinc concentrations in early
pregnancy is associated with greater birth
weights and head circumferences, with the effect
occurring in women with body mass index 26
kg/m2. The specific effects of zinc on the fetus
are unknown, and future work is focusing on zinc
effects on embryonic cells in vitro. - 192 words
32Abstract Be Specific
- The principles of reconstruction of the traumatic
losses of the external ear are presented, with
emphasis on effective treatment of the acutely
injured ear. The steps necessary for obtaining
satisfactory reconstruction are discussed,
including two new techniques. - In the past decade, advances in soft tissue
surgical techniques have allowed surgeons to
successfully reconstruct detached ears. We
present two new surgical reconstruction
techniques of the acutely injured detached ear.
These include the use of local and distant
tissues to obtain soft-tissue coverage, and the
recent use of Silastic cartilage for structural
support
33The Introduction
34Introduction
- Why did you carry out this research? State the
specific purpose or rationale for the study. - What is the existing state of knowledge of this
topic? Synthesize information tracing the
development of the problem and summarize its
current stateie, the background. You ask (with
citations) - Whats known?
- Whats unknown?
- What are the gaps in knowledge this study will
fill? - What are you going to do and what do you expect
to find? - State your hypothesis or question clearly
(Objectives, Aims) - Give only strictly pertinent references.
35Introduction
- This is a vital part of your paperit convinces
(or not) the reader whether your study - Has merit and asks important research questions
- Is focused and supported by relevant recent
citations - Is ultimately important to human health and human
disease - Reviewers and editors will judge the papers
importance in the introduction. - You will better focus your introduction AFTER you
construct your findings (results) and consider
them (discussion). - Your research question is the most important
partin your discussion, you will address whether
the question or hypothesis was answered based on
your data.
36Introduction Structure
- What is the general problem or current situation?
- Zinc plays a critical role in many biochemical
functions, including nucleic acid metabolism and
is critical in early development. - What is the specific problem or controversy? Its
significance? - Zinc deficiency is associated with increase
metabolic problems in fetuses. Studies evaluating
relationship between zinc intake and pregnancy
outcomes have produced conflicting results for
many reasons - What are our hypotheses/questions, and how will
we answer them? - To clarify the relationship between zinc levels
in the mothers diet and pregnancy outcomes, we
undertook a randomized placebo-controlled trial
of zinc supplementation. - Our objective was to determine if zinc
supplementation was associated with higher birth
weight. - Our findings will help to provide continuing
nutritional guidelines in pregnancy.
37The Methods
38Methods are Critical Editors Responses
What section contains the most flaws?
What section responsible for outright rejection?
Discussion
Discussion
Results
Results
Methods
Methods
Introduction
Introduction
Byrne DW, Publishing Medical Research Papers,
Williams and Wilkins, 1998
39Methods
- Editors judge the study on whether your methods
are adequate to answer your specific aim or
hypothesis - Rationale for choosing procedures/tests
- The pivotal point to judge whether the results
are valid - Dont suggest a method you have no expertise with
- Your peer reviewer may uncover this
- Use consultants for methods you have no
experience with, stating this in paper - Methods usually the weakest section
- Often deficient in detail, not providing enough
information to replicate the study - Statistical shortcomings
40Methods
- Study design or analysis type and period of study
- Condition or disease studied
- Human subjects approval
- Details of sample (number, recruiting methods of
study subjects, patients, how organized) - Interventions, outcome measures, statistical
analyses - Include the locations and times that data were
collected - Give enough information to replicate the study
dont assume only the specialist in your field
will read it
41Methods
- Balance between brevity and completeness
- Sometimes reference an often-used method
- Use figures and tables (eg, flow diagram)
- Naming thingsbe consistent
- Acronymsspell out first time, use consistently
throughout - Specialized tests, termsuse identical name in
text, figs, tables - Develop list of frequently used terms
- Present in logical order and your subsequent
results should follow that same order
42MethodProcedures
Method diagrams communicate schedule of
procedures, enrollment, study design, mechanisms
of action, guidelines, algorithms to reduce text
and increase comprehension.
43The Results
44ResultsThe Beginning
- The heart of your paper
- Write after figures and tables are constructed
- Consider your data critically
- Construct tables, figures and include them in
outline - Write the results
- Use subheadings
- Results determine
- Whether youve answered your original question(s)
- Your direction for future studies
- Both of which belong in the discussion
45ResultsThe Beginning
- State ALL the findings
- Whether significant or not
- Without bias or interpretation
- Do not include weaknesses, strengths of study, ie
dont discuss results - List experiments in order listed in methods
- Use logical headers and group your findings
- Characteristics of study subjects
- Findings in order listed in methods
- General to specific
- Use past tense
- Results confirm or reject your hypothesis they
do not prove anything.
46Results
- Short and to the pointMain or most important
findings first - Present only data directly relevant to the
studyfocus - Dont repeat methods but you may remind the
reader briefly how you measured something. - Allow the data to speak for itselfuse
tables/figures construct them first and use as a
basis for writing - In Tables and Figures, be descriptive, specific.
Do not repeat the obvious - NO Results of the kidney lead analysis are shown
in Table 1. - YES Kidney lead concentrations increased in
group 1 over the first 10 study weeks (Table 1). - Present absolute numbers and percentages so
reviewers can judge the significance of the
findings. - Statistical significance ? clinical significance
47Results or Data?
- Results
- Mean translational movements in the X (left to
right), Y (back to front) and Z (bottom to top)
head directions were 0.10 0.11 mm, 0.16 0.03
mm, and 0.65 0.58 mm, respectively. Mean
rotational movements about the three axes were
0.44 0.42 degrees, 0.24 0.26 degrees, and
0.18 0.17 degrees, respectively. Movement was
not significantly correlated with age for
translation in the X (r -0.09 p 0.69), Y (r
0.21 p 0.35) or Z (r -1.02 p 0.64)
directions. Movement was not significantly
correlated with age for rotation in the X (r
0.15 p 0.51), Y (r -0.20 p 0.35) or Z (r
0.02 p 0.94) directions.
48Results!
49ResultsDont Regurgitate Data
- As shown in Table 1, the mean age of participants
was 20.4 2 years, and 80 of patients were
Caucasian. Treatment group contained 40 patients,
whereas control group contained 45 patients.
Table 2 shows the demographics of women in these
groups. There were 24 women in the control group,
and 33 women in the treatment group... - There were no significant differences in
treatment and control patient intake demographics
(Table 1), although a significantly greater
number of patients in the treatment group dropped
from the study for a variety of reasons, mostly
relating to adverse reactions. However, analysis
of patients in this group later revealed that
those dropped patients had significant disease at
intake (Table 2). In comparing the two treatment
groups (Figure 1), we found that...
50Dont State the Obvious
Figure 1 is a graph illustrating the plasma zinc
levels (µmoL/L) over the 37 weeks versus
gestational age in both the zinc supplement group
and placebo group. The placebo and the zinc group
both decreased over the 37 weeks of the study,
but the differences were significant for the zinc
group.
51State Whats Important
We measured mothers plasma zinc levels before
randomization (week 19) and at 26, 32, and 37
weeks gestational age (Fig 1). Beginning as
early as 26 weeks and at each timepoint,
differences in plasma zinc levels between placebo
and zinc supplement groups were statistically
significant (P0.05) after randomization.
52ResultsMajor Mistakes
- Failure to provide all the data critical to
answering the research question - Interpreting or commenting on results
- Six of the 20 patients required intubation,
illustrating the seriousness of this problem
(belongs in Discussion) - Over 40 of treated rats exhibited a decreased
inflammatory response, an unexpected finding
(belongs in Discussion) - Failure to adequately address statistical methods
- Tables and figures inappropriate, unbalanced
- Tables and figures poorly constructed
53The Discussion
54Discussion Construction
- Summarize major findings1st paragraph
- Explain how your findings relate to those of
otherswhat do they mean? - Clinical relevance of the findings?
- Limitations and how this influenced your study?
- How will you overcome these in the next studies?
- Explain the implications of findings
- What future direction(s) will you take?
55Discussion Getting Carried Away
- Few studies make discoveries changing the course
of scientific direction, and so authors - Attempt to overly state or the importance of
their findings - Come to erroneous or unsupported conclusions
- Uncritically accept statistical results
- This all distracts from works importance and
signals to the reviewer problems with the
research - Also results in excessive length, a common
problem - Authors should let the data speak for themselves
56DiscussionCommon Mistakes
- Unwarranted speculations
- Injecting tangential issues
- Conclusions not supported by the data
- Not suggesting future directions for research
- hypothesis Ô study Ô data/results Ô conclusions
- TIGHT PACKAGE
57Sections Unbalanced
Article 3650 words
58Tables Figures
59Tables and Figures
- Critical to a paperEditors and readers look at
these before reading the paper! - Editors judge your paper on how well these are
constructed - Stand alone and tell a complete story
- Unambiguousimmediately clear
- Eliminate numerical data and long explanations in
text - Figures display important trends, procedures,
simplify detailed data, and show basic
methodologies.
60Tables
This requires a table!
61Tables
This result does NOT require a table!
Growth medium aeration was essential for the
growth of S. coelicolor. At room temperature
(24C), no growth was measurable in stationary
cultures, whereas in aerated cultures, we
measured substantial growth (78 Klett units).
62Tables Result
In women with BMI lt26 kg/m2, zinc supplementation
was associated with a significant increase in
birth weight of 248 g (P0.005), an increase in
head circumference of 0.7 cm (P0.005), and
increase in arm length of 0.3 cm (P0.03). The
other outcome measures all favored the zinc
supplement group but the differences were not
statistically significant (Table 2).
63Table Result
Table 3 shows the mean birth weight by the BMI
categories recommended by the NIH Institute of
Medicine. The lower the BMI, the greater the
effect of zinc supplementation on birth weight.
64Patient Disposition (Results)
Complex Study Design Simplified
65Bar or Line Graphs-Colors?
This graph will
appear in the journal like this
- Journals DO NOT allow color graphs unless they
are necessary for understanding the graph
66Simple Graph
- Use graphing software in word/powerpoint to
create KISS - No more than 3-4 groups
- Keep all lines solid, few symbols
- Put in SD and P values if relevant
67From The Journal Editors Perspective
68Prepare Your Manuscript Carefully
- Incorrect style irritates reviewers and editors,
and the wrong style suggests that another journal
previously rejected the paper. - Edit carefully
- Eliminate spelling, punctuation, and grammar
errors - Good writing requires rewriting
- Check accuracy of references with original
sources - Incorrect citations inconvenience the publisher
and are a disservice to the reader - Double-check numerical data!
- Numbers in abstract, text, tables, figures,
ledends, and text must be consistent and correct
69Avoid Repetition
- Do not disclose results in introduction
- Do not repeat the Introduction in Discussion
- In text
- Do not repeat figure legends, table titles, or
contents of the tables themselves - Use tables sparingly
- Presenting a few facts in text takes less space
than a table - Do not use tables for presenting simple lists
- Abbreviations, definitions, symbols in figures
and tables must be explained in legends and
footnotes - Never refer a reader back to text for such
information
70Journal Review
- Full review and decision takes 1 month
- Editors make decision based on arguments they
dont count votes from Peer Reviewers - Most papers undergo 2 rounds before publication
- For borderline decisions, a goal is to avoid
multiple rounds of review - Pressure to publish quickly may lead to rejection
if further experiments are needed
71What Helps or Hinders the Paper?
- What Helps?
- New data to a point
- Referee or Editor made factual errors (easy to
prove) - Careful and accurate response to criticisms
(table) - Telling the editor that reviews were helpful in
improving the paper - Knowing how to submit to the journal
electronically Practice! - What Doesnt?
- Referees were unfair and the criticisms were
largely not valid - Guesses at referee identity followed by personal
attacks - Specific evidence of bias by referee (difficult
to prove) - Endorsements or (positive) statements about your
standing and reputation
72The Paper Is Cohesive
- Question (objective, specific aim) is posed in
Introduction - Methods tell how you propose to answer these aims
- Results presented answer (or not) the question
- Discussion should be within the bounds of the
results - Conclusions directly answer the original
questions in the Introduction - Each section should refer back to one another
73Evaluate Your Paper
- To understand and evaluate your paper, the editor
will ask (and so should you)
- What specific questions/aims does the paper
address? - Are the methods/design adequate to answer your
questions? - What are the main conclusions?
- What specific evidence (data) supports those
conclusions? - What is the quality of that evidence?
- Conclusions what is the studys
significancewhat insights or new directions are
evident?
74My Suggestions
- Put the manuscript away for a couple of days
- Read troublesome areas aloud
- Dont try to edit a mangled paragraphdelete and
rewrite it - Your colleagues reviews of writing and
table/figures are valuabledont be defensive
about edits - Let go of academic writing habits and dont
imitate others writing. Develop your own clear,
direct style
75Writing Deficiencies
Most commonly cited by journal editors
- Wordiness and redundancies
- Poor flow of ideas
- Poor syntax and grammar
- Excessive abstraction
- Unnecessary complexity
- Excessive compression
- Unnecessary qualification
- Cut, condense, combine
- Outline to catch logic problems
- Consult an editor
- Be specific and descriptive
- Keep it simple and direct
- Do not overly compress writing
- Qualify statements as necessary
Byrne, D. Science Editor 232, 2000
76Summary
- Outline your paper
- Start early as your data is being analyzed
- Look at your data and decide how to organize and
present your results tables, figures, text - Patterns and clues will emerge to guide your
argument - Start with results then introduction and
discussion/conclusions - Write title and abstract last
- Put it away, re-read, give to your colleagues to
read - Revise, revise, and re-revise
- Adhere to journal guidelines!
- Critically evaluate your paper with an editors
eye - Write clearly, logically, and simply!