Bioinformatics Toolkit Experiments

1
Bioinformatics Toolkit Experiments

• By Danny Lam

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Bioinformatics Toolkit

• What does it have?
• ? Sequence Statistics/Alignment
• Scoring Matrices
• Hidden Markov Models
• Microarray data visualization/cluster analysis
• Plotting Utilities (Protein Plot)

3
BLMT Website

• -Graphing Utilities
• ? Visually displays statistical analysis and
  ngram comparison for multiple genome sequences.
• ? Conclusion Incorporation of toolkit
  functionalities onto website

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Advantages

• Friendly User Interface
• (Not limited to just people with Matlab)
• No need to enter text commands
• No need of knowing matlab terminology
• Genome sequence files
• easy to load with interface (default list already
  made)
• Images
• ? easy download from site
• ? manageable format control
• 4. Help Section
• ? Can be more in depth for the common
  user

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Demo ToolKit

• Tutorial Bioinformatics Section (BLMT)
• ? Based on demo simulations in bioinformatics
  toolkit
• ? Help for first time users to get better
  understanding (hands on)
• ? Endless possibilities for tutorial experiments
• ? Possibly incorporate with other tools on
  website