Visualization and Bio-informatics Breakout - PowerPoint PPT Presentation

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Visualization and Bio-informatics Breakout

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Not solved; Too many lines in limited screen real-estate, perceptual bottlenecks, ... clickable CGI-generated GIFs. SDMIV NeSC/ESI Thursday 24/10/2002 ... – PowerPoint PPT presentation

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Title: Visualization and Bio-informatics Breakout


1
Visualization and Bio-informaticsBreakout
  • Chair Julian Gallop
  • Scribe Stephen Pickles

2
people
  • Julian Gallop
  • Neil Hanlon
  • Ela Hunt
  • Matt Neilson
  • Stephen Pickles

3
Visualization Challenges
  • Single chromosome map solved - tools exist today
  • Comparison of genomes
  • Not solved Too many lines in limited screen
    real-estate, perceptual bottlenecks,
  • Visualization and exploration of large (eg.
    phylogenetic) trees
  • Polymer docking
  • Generally, existing tools insufficiently
    interactive
  • Cf. clickable CGI-generated GIFs

4
Computing infrastructure challenges
  • Babel of different data types and formats
  • Data volumes exploding
  • Data dimensionality growing
  • Image data captured at source (eg. cellular
    datasets)
  • Escalating issues of
  • Data storage
  • Data transfer
  • Metadata
  • Public access
  • Interoperability of tools

5
Computing infrastructure ingredients of a
solution
  • XML? Configuration language(s) for many datatypes
    in biology
  • Sequence, protein structure,
  • Interoperable tools
  • Simplicity, ease of use
  • Workflow
  • Policies on data sharing supported by funding
    bodies
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