BIOPATTERN Cancer Data Analysis Workshop

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BIOPATTERN Cancer Data Analysis Workshop
Arenberg Castle, Leuven, Belgium February
21-22, 2005
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BIOPATTERN Cancer Data Analysis Workshop
LOCATION Arenberg Castle, Katholieke
Universiteit Leuven
Kasteelpark Arenberg 1, 3001 Leuven-Heverlee,
Belgium DATES February 21-22, 2005 ORGANIZERS
joint TF2 and SIG CANCER work package meeting
Local Sabine Van Huffel, Dr. Dirk
Timmerman, Dr. Patrick Neven International
Michalis Zervakis, Paulo Lisboa, Elia Biganzoli,
Antonina Starita, Jose
Manuel Fonseca, Emmanuel Ifeachor,
Azzam Taktak, Patricia
Boracci PREPARATORY DOCUMENTS All
relevant reports (EU deliveries D8, D11 and D12,
publications, protocols, database descriptions,
) will be available on the web portal
www.biopattern.org before the meeting
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BIOPATTERN Cancer Data Analysis Workshop

• DAY 1 MORNING State of the Art presentations
• 9h00-9h30 registration
• 9h30-9h35 opening
• 9h35-10h30 BIOPATTERN Analysis Task Force (M.
  Zervakis)
• aim, structure, Description
  of Work during first 18 months
• State of the art
  algorithms for biopattern analysis (D8)
• 10h30-11h00 BIOPATTERN Special Interest Group
  Cancer (P. Lisboa)
• aim, structure, Description
  of Work during first 18 months
• State of the art
  technology for cancer analysis (D11)
• 11h00-11h30 coffee break
• 11h30-12h50 Good practice case studies in Cancer
  Data Analysis
• 11h30-12h10 SP09 Ovarian Tumor Analysis (IOTA)
  (D. Timmerman)
• data description, analyses
  performed results, multicentre study
• 12h10-12h50 SP17 Ocular melanoma analysis
  (geoconda) (A. Taktak)
• data description, analyses
  performed results, multicentre study
• 12h50-14h00 lunch break

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BIOPATTERN Cancer Data Analysis Workshop

• DAY 1 AFTERNOON Presentations Breast Cancer Data
  Analysis
• 14h00-15h30 SP12 Breast cancer Prognosis
• LJMU (P. Lisboa) clinical aims, data
  description, analyses performed results
• Milan (E. Biganzoli) clinical aims, data
  description, analyses performed results
• KUL (P. Neven) clinical aims, data
  description, analyses performed results
• 15h30-16h00 SP13 Breast cancer BioInformatics
  (E.BiganzoliP. Boracci)
• clinical aims, data
  description, analyses performed results
• 16h00-16h30 coffee break
• 16h30-18h00 Brainstorming Clinical aims Data
  handling
• 16h30-17h30 clinical questions, desired outcomes
  (P. Neven)
• (e.g. predict malignancy, survival
  probability, risk factors,)
• 17h30-18h00 Data handling issues (A. Taktak)
• (standardization, storage, web, ethical,
  format, )
• 19h00 Dinner

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BIOPATTERN Cancer Data Analysis Workshop

• DAY 2 MORNING Brainstorming Breast Cancer Data
  Analysis
• 9h00-10h30 Brainstorming Analysis and Evaluation
  
• 9h00-10h00 Analysis (M. Zervakis)
• which analyses to be performed? Choice of
  algorithms, how to combine conventional data with
  genomic data, need for software repository,
  computer languages,
• 10h00-10h30 Evaluation (E. Biganzoli E.
  Ifeachor)
• ROC, Sensitivity, specificity,
• 10h30-11h00 coffee break
• 11h00-12h30 Brainstorming e-delivery,
  Bioinformatics and Dissemination
• 11h00-11h30 e-delivery (J. M. Fonseca E.
  Ifeachor) e-security,
  quality of services,
• 11h30-12h00 Bioinformatics (E. Biganzoli P.
  Boracci)
• algorithms, public data, data
  acquisition,
• 12h00-12h45 Dissemination (S. Van Huffel)
• publications planned, workshops
  scheduling, exchange of students,
• 12h45-14h00 Lunch

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BIOPATTERN Cancer Data Analysis Workshop
DAY 2 AFTERNOON BIOPATTERN meetings 14h00-15h00
progress meeting Task Force Analysis
15h00-16h00 progress meeting Special Interest
group Cancer 16h-18h Executive team
meeting HAPPY END