Bioin401 Project: Microarray Pipeline

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Bioin401 Project Microarray Pipeline

• Chunyan Meng,
• Yifeng Liu,
• Chelsea Ju
• March 13, 2006

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Microarray Pipeline Background Synopsis

• Input Data Processing
• CEL file uploading
• Normalization, Background correction
• Expression index calculation, Gene selection
• Data Interpretation
• Clustering
• Gene Annotation
• Gene Function Prediction
• Report Publisher
• Participants
• Yifeng Liu
• Chelsea Ju

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Microarray Pipeline GANTT Chart
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Micorarry PipelineCEL file upload
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Hiearchical Clustering (heatmap)
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Microarray PipelineGene Function Prediction

• BASys (Bacterial Annotation System).
• Protfun ab initio predictions of protein
  function from sequence.

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Microarray PipelineWhat to do next

• Paper review on gene function prediction
• Test file upload javascript on different web
  browsers
• Integrating different parts together

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Microarray Pipeline GANTT Chart
?