Function Express

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Function Express
November 30, 2007
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Function Express Architecture
MGA
MAC
LocalDB (MySQL)
Chip Data Virtual Experiment Data
Integrated DB (Oracle 9i)
Individual
Chip Data Gene Annotations Analysis
LocalDB (MySQL)
Bioinformatics Core
Laboratory
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Function Express Log in Auto Update
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Function Express Experiment Menu
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Creating and Opening Virtual Experiments
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Function Express Overview
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Importing Data and Security Features
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• Security Movie

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Manipulating Categories
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Function Express Viewers
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Plotting Microarray Data
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Function Express Viewers
Clinical Data
Category History
Probeset Data
Probeset Comments
Category Comments
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BioCarta Pathway browser
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Gene Inspector
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Browsing Gene Annotations
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Manipulating and Importing Analysis Results Movies
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Function Express Analyzing Data
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SAM PCA Weighted Voting
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Function Express Analyzing Data

• SVM
• Consensus Clustering
• Comparative Marker Selection

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Function Express What to do after analysis?

• Are co-expressed genes co-regulated?
• What regulatory networks are operating/perturbed
  in your experimental paradigm?
• What pathways/processes emerge from a set of
  interesting genes?
• Promoter Analysis Pipeline
• Gene Network Viewer
• IPA

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Promoter Analysis Pipeline
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Gene Network Viewer
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Acknowledgments