Using The Web Resources: Challenges in Integrating Proteomics Data

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Using The Web ResourcesChallenges in
Integrating Proteomics Data
Peter McGarvey - Georgetown University Stephen
Cammer VBI
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Albert Einstein

• Albert Einstein College of MedicineT. gondii, C.
  parvum
• Caprion Pharmaceuticals B. abortus
• Harvard Institute of Proteomics V. cholerae, B.
  anthracis
• Myriad Genetics B. anthracis, Y. pestis, F.
  tularensis, Vaccinia, Variola
• Pacific Northwest National Laboratory S.
  typhimurium, S. typhi, Vaccinia, Monkeypox
• ScrippsSARS CoV, Influenza
• University of Michigan B. anthracis

U of Michigan
PNNL
Harvard
Myriad
DATA
Scripps
Caprion
Resource Center
PIR
VBI
SSS
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Organism
Research Center
Data Type
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Challenges

• Working with seven research centers with
  different technologies, pathogens and processes.
• Integrating three institutions that make up the
  Resource Center with different expertise, web and
  database technologies.
• Conveying newly discovered information to a
  diverse community in an informative, user
  friendly format that is useful to the scientific
  public.

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www.proteomicsresource.org
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Mouse proteins detected in B. anthracis and S.
typhimurium infected macrophages
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More at the Posters and Demos
Reagent Directory
Links to PRC databases
Protein/Gene Specific Links to other NIAID
Resources including IEDB, BRC annotation
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More at the Posters and Demos

• Analysis and Visualization Tools

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More at the Posters and Demos

• Reagent Directory
• Links to PRC databases
• Analysis and Visualization Tools
• Protein/Gene Specific Links to other NIAID
  Resources including IEDB, BRC annotation.

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Protein and Reagent Information
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www.proteomicsresource.org