Title: REVIEW on CARBOHYDRATES
1REVIEW on CARBOHYDRATES
- Aulanniam
- Biochemistry Laboratory_UB
2CARBOHYDRATES
- Hydrates of carbon Cn(H2O)m
- Polyhydroxyaldehyde or polyhydroxyketone, or
substance that gives these compounds on
hydrolysis - Most abundant organic compound in the plant world
- Chemically made up of skeletal C,H which is
usually 2x the number of C, highly variable
number of O, occasional N S - Linked to many lipids and proteins
3FUNCTIONS of CARBOHYDRATES
- Storehouses of chemical energy
- Glucose,starch, glycogen
- Structural components for support
- Cellulose, chitin, GAGs
- Essential components of nucleic acids
- D-ribose, 2-deoxy-D-ribose
- Antigenic determinants
- Fucose, D-galactose, D-glucose,
N-acetyl-D-glucosamine, D-acetyl-D-galactosamine
4SPECIFIC CARBOHYDRATES
- Monosaccharides
- Glucose (dextrose, grape sugar, blood sugar)
- Can be stored as glycogen
- Most metabolically important monosaccharide
- Fructose (levulose)
- Galactose (brain sugar)
- Mannose
- Targets lysosomal enzymes to their destinations
- Directs certain proteins from Golgi body to
lysosomes
5- Disaccharides
- Sucrose (table sugar, cane sugar, saccharose)
- glucose fructose linked aß1-2
- Lactose (milk sugar) glu gal linked ß 1-4
- Maltose (malt sugar) 2 glucose linked a 1-4
- Trehalose (mycose) 2 glucose linked a 1-1
- Gentiobiose (amygdalose) 2 glucose linked ß 1-6
- Cellobiose 2 glucose linked ß 1-4
6CLASSES OF CARBOHYDRATES
- Number of C
- Triose, tetroses, pentose, hexose, heptulose
- Number of saccharide units
- Monosaccharides, disaccharides, oligosaccharides
(2 to 10 units), polysaccharides - Position of carbyonil (CO) group
- Aldose if terminally located
- Ketose if centrally located
- Reducing property
- Reducing sugars (all monosaccharides)
- Nonreducing sugars (sucrose)
7STRUCTURAL PROJECTIONS OF MONOSACCHARIDES
- FISCHER by Emil Fischer
- (Nobel Prize in Chemistry 1902)
- 2-D representation for showing
- the configuration of a stereocenter
- Horizontal lines project forward
- while vertical lines project towards
- the rear
- D (R or ) or L (S or -)
8- HAWORTH by Walter Haworth
- (Nobel Prize in Chemistry 1937)
- A way to view furanose (5-membered ring) and
pyranose (6-membered ring) forms of
monosaccharides - The ring is drawn flat and viewed through its
edge with the anomeric carbon on the the right
and the oxygen atom on the rear
9ANOMERIC CARBON
10CHAIR BOAT CONFORMATIONS
11AMINO SUGARS
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13POLYSACCHARIDES
- STARCH
- Storage carbohydrate in plants
- Two principal parts are amylose (20-25)
amylopectin (75-80) which are completely
hydrolyzed to D-glucose - Amylose is composed of continuous, unbranched
chain of 4000 D-glucose linked via a 1-4 bonds - Amylopectin is a chain of 10,000 D-glucose units
linked via a 1-4 bonds but branching of 24-30
glucose units is started via a 1-6 bonds
14- GLYCOGEN
- Energy-reserve carbohydrate in animals
- Highly branched containing approximately 106
glucose units linked via a 1-4 bonds a 1-6
bonds - Well-nourished adult stores 350 g. of it equally
divided between the liver and muscles
15CELLULOSE
- Plant skeletal polysaccharide
- Linear chain of 2200 glucose units linked via ß
1-4 bonds - High mechanical strength is due to aligning of
stiff fibers where hydroxyl form hydrogen bonding
16ACIDIC POLYSACCHARIDES
- Also called mucopolysaccharides (MPS) or
glycosaminoglycans (GAG) - Polymers which contain carboxyl groups and/or
sulfuric ester groups - Structural and functional importance in
connective tissues - Interact with collagen to form loose or tight
networks
17ACIDIC POLYSACCHARIDES
- HYALURONIC ACID
- Simplest GAG
- Contains 300-100,000 repeating units of
D-glucuronic acid and N-acetyl-D-glucosamine - Abundant in embryonic tissues, synovial fluid,
and the vitreous humor to hold retina in place - Joint lubricant shock absorber
- HEPARIN
- Heterogeneous mixture of variably sulfonated
chains - Stored in mast cells of the liver, lungs and the
gut - Naturally-occurring anticoagulant by acting as
antithrombin III and antithromboplastin - Composed of two disaccharide repeating units A
B - A is L-iduronic acid-2-sulfate linked to
2-deoxy-2-sulfamido-D-galactose-6-sulfate - B is D-glucuronic acid beta-linked to
2-deoxy-2-sulfamido-D-glucose-6-sulfate
18- HEPARAN SULFATE
- CHONDROITIN SULFATE
- Most abundant in mammalian tissues
- Found in skeletal and soft connective tissues
- Composed of repeating units of N-acetyl
galactosamine sulfate linked beta1-4 to
glucuronic acid - KERATAN SULFATE
- DERMATAN SULFATE
- Found in skin, blood vessels, heart valves,
tendons, aorta, spleen and brain - The disaccharide repeating units are L-iduronic
acid and N-acetylgalactosamine-4-sulfate with
small amounts of D-glucuronic acid
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20GLYCOLYSIS
- The specific pathway by which the body gets
energy from monosaccharides - First stage is ACTIVATION
- At the expense of 2ATPs glucose is phosphorylated
- Step 1
- formation of glucose-6-phosphate
- Step 2
- isomerization to fructose-6-phosphate
21- Step 3
- Second phosphate group is attached to yield
fructose-1,6-bisphosphate - Second stage is C6 to 2 molecules of C3
- Step 4
- Fructose-1,6-bisphosphate is broken down into two
C3 fragments - glyceraldehyde-3-phosphate (G-3-P) and
-
- dihydroxyacetone phosphate (DHAP)
- Only G-3-P is oxidized in glycolysis. DHAP is
converted to G-3-P as the latter diminishes.
22ATP-YIELDING Third stage
- Step 5
- Glyceraldehyde-3-phosphate is oxidized to
1,3-bisphosphoglycerate hydrogen of aldehyde is
removed by NAD - Step 6
- Phosphate from the carboxyl group is transferred
to the ADP yielding ATP and 3-phosphoglycerate - Step 7
- Isomerization of 3-phosphoglycerate to
2-phosphoglycerate
23- Step 8
- Dehydration of 2-phosphoglycerate to
phosphoenolpyruvate (PEP) - Step 9
- Removal of the remaining phosphate to yield ATP
and pyruvate - Step 10
- Reductive decarboxylation of pyruvate to produce
ethanol and CO2
24REACTIONS OF GLYCOLYSIS
STEP REACTION ENZYME REACTION TYPE ?G in kJ/mol
1 Glucose ATP ? G-6-P ADP H Hexokinase Phosphoryl transfer -33.5
2 G-6-P ?? F-6-P Phosphoglucose isomerase Isomerization -2.5
3 F-6-P ATP ? F-1,6-BP ADP H Phosphofructo-kinase Phosphoryl transfer -22.2
25STEP REACTION ENZYME REACTION TYPE ?G in kJ/ mol
4 F-1,6-BP ?? DHAP GAP Aldolase Aldol cleavage -1.3
5 DHAP ?? GAP Triose phosphate isomerase Isomerization 2.5
6 GAP Pi NAD ?? 1,3-BPG NADH H Glyceraldehyde-3-Phosphate Dehydrogenase Phosphorylation coupled to oxidation 2.5
7 1,3-BPG ADP ?? 3-phosphoglycerate ATP Phosphoglycer-ate kinase Phosphoryl transfer 1.3
8 3-phosphoglycerate ?? 2-phosphoglycerate Phosphoglyce-rate mutase Phosphoryl shift 0.8
9 2-phosphoglycerate ?? PEP HOH Enolase Dehydration -3.3
10 PEP ADP H ? pyruvate ATP Pyruvate kinase Phosphoryl transfer -16.7
26CITRIC ACID CYCLE
STEP REACTION ENZYME PROSTHETIC GROUP REACTION TYPE ?Go in kJ/ mol
1 acetylCoA oxaloacetate HOH ? citrate CoA H Citrate synthase Condensation -31.4
2a Citrate ?? cis-aconitate HOH Aconitase Fe-S Dehydration 8.4
2b Cis-Aconitate HOH ?? isocitrate Aconitase Fe-S Hydration -2.1
27CITRIC ACID CYCLE
STEP REACTION ENZYME PROSTHETIC GROUP REACTION TYPE ?Go in kJ/ mol
3 Isocitrate NAD ?? a-ketoglutarate CO2 NADH Isocitrate Dehydro-genase Decarboxylation oxidation - 8.4
4 a-ketoglutarate NAD CoA ?? succinyl CoA CO2 NADH a-ketogluta-rate dehydro-genase complex Lipoic acid, FAD, TPP Decarboxyla-tion oxidation -30.1
5 Succinyl CoA Pi GDP ?? succinate GTP CoA Succinyl CoA synthet-ase Substrate-level phosphoryla-tion -3.3
28CITRIC ACID CYCLE
STEP REACTION ENZYME PROSTHETIC GROUP REACTION TYPE ?Go in kJ/ mol
6 Succinate FAD (enzyme-bound) ?? fumarate FADH2 (enzyme-bound) Succinate dehydro-genase FAD, Fe-S Oxidation 0
7 Fumarate HOH ?? L-malate Fumarase Hydration -3.8
8 L-malate NAD ?? oxaloacetate NADH H Malate dehydro-genase Oxidation 29.7
29REGULATION OF TCA CYCLE
Pyruvate
- ATP, acetyl CoA NADH
Acetyl CoA
Oxaloacetate
Citrate
Malate
Isocitrate
- ATP NADH ADP
Fumarate
ICD
?-Ketoglutarate
Succinate
- ATP, succinyl CoA NADH
?-KGD
Succinyl CoA
30BIOSYNTHETIC ROLES OF TCA CYCLE
Pyruvate
Other amino acids, purines pyrimidines
Acetyl CoA
Oxaloacetate
Citrate
Fatty acids, sterols
Malate
Aspartate
Isocitrate
Fumarate
Other amino acids purines
?-Ketoglutarate
Succinate
Porphyrins, heme, chlorophyll
Glutamate
Succinyl CoA
31NOTES TO REMEMBER
- The unusual thing about the structure of
N-acetylmuramic acid compared to other
carbohydrates is the presence of a lactic acid
side chain. - Cell walls of plants are cellulosic (polymer of
D-glucose) bacterial cell walls consist mainly
of polysaccharide crosslinked to peptide through
murein bridges and fungal cell walls are
chitinous (polymer of N-acetyl-ß-D-glucosamine)
32- Glycogen and starch differ mainly in the degree
of chain branching. - Enantiomers are nonsuperimposable, mirror-image
stereoisomers differing configuration on all
carbons while diastereomers are nonsuperimposable
nonmirror-image stereoisomers differing only on
two carbons. - Fischer projection of glucose has 4 chiral
centers while its Haworth projection has 5 chiral
centers.
33- Sugar phosphate is an ester bond formed between a
sugar hydroxyl and phosphoric acid. - A glycosidic bond is an acetal which can be
hydrolyzed to regenerate the two original sugar
hydroxyls. - A reducing sugar is one that has a free aldehyde
group that can be easily oxidized.
34- Major biochemical roles of glycoproteins are
signal transduction as hormones, recognition
sites for external molecules in eukaryotic cell
membranes, and defense as immunoglobulins. - L-sorbitol is made by reducing D-glucose.
- Arabinose is a ribose epimer, thus, its
derivatives ara-A and ara-C if substituted for
ribose act as inhibitors in reactions of
ribonucleosides.
35- Two best precursors for glycogen are glucose and
fructose. - Cellulose because of the ß- bonding is linear as
to structure and structural as to role while
starch because of a-bonding coils with energy
storage role. - The highly branched nature of glycogen gives rise
to a number of available glucose molecules at a
time upon hydrolysis to provide energy. A linear
one provides one glucose at a time.
36- The enzyme ß-amylase is an exoglycosidase
degrading polysaccharides from the ends. The
enzyme a-amylase is an endoglycosidase cleaving
internal glycosidic bonds. - Dietary fibers bind toxic substances in the gut
and decreases the transit time, so harmful
compounds such as carcinogens are removed from
the body more quickly than would be the case with
low-fiber diet. - The sugar portions of the blood group
glycoproteins are the source of the antigenic
difference.
37- Cross-linking can be expected to play a role in
the structures of cellulose and chitin where
mechanical strength is afforded by extensive
hydrogen bonding. - Converting a sugar to an epimer requires
inversion of configuration at a chiral center.
This can only be done by breaking and reforming
covalent bonds. - Vitamin C is a lactone (a cyclic ester) with a
double bond between two of the ring carbons. The
presence of a double bond makes it susceptible to
air oxidation. - The sequence of monomers in a polysaccharide is
not genetically coded and in this sense does not
contain any information unlike the nucleotide
sequence.
38- Glycosidic bonds can be formed between the side
chain hydroxyls of serine or threonine residues
and the sugar hydroxyls. In addition, there is a
possibility of ester bonds forming between the
side chain carboxyl groups of aspartate or
glutamate and the sugar hydroxyls. - In glycolysis, reactions that require ATP are
- 1. phosphorylation of glucose (HK,GK)
- 2. phosphorylation of fructose-6-phosphate
(PFK) - Reactions that produce ATP are
- 1. transfer of phosphate from 1,3-
- bisphosphoglycerate to ADP (PGK)
- 2. transfer of phosphate from PEP to ADP (PK)
39- In glycolysis, reactions that require NADH are
- 1. reduction of pyruvate to lactate (LDH)
- 2. reduction of acetaldehyde to ethanol
- (alcohol dehydrogenase)
- Reactions that require NAD are
- 1. oxidation of G-3-P to give 1,3-DPG (G-3-PD)
- NADH-linked dehydrogenases are LDH, ADH G-3-PD.
- The purpose of the step that produces lactate is
to reduce pyruvate so that NADH can be oxidized
to NAD needed for the step catalyzed by
glyceraldehyde-3-phosphate. -
40- Aldolase catalyzes the reverse aldol condensation
of fructose-1,6-bisphosphate to
glyceraldehyde-3-phosphate and DHAP. - The energy released by all the reactions of
glycolysis is 184.5 kJ mol glucose/mol. The
energy released by glycolysis drives the
phosphorylation of two ADP to ATP for each
molecule of glucose, trapping 61.0 kJ
mol/glucose. The estimate of 33 efficiency comes
from the calculation (61.0/184.5) x 100 33. - There is a net gain of two ATP molecules per
glucose molecule consumed in glycolysis. The
gross yield of 4 ATPs per glucose molecule, but
the reactions of glycolysis require two ATP per
glucose.
41- Pyruvate can be converted to lactate, ethanol or
acetylCoA. - The free energy of hydrolysis of a substrate is
the energetic driving force in substrate-level
phosphorylation. An example is the conversion of
glyceraldehyde-3-phosphate to 1,3-bisphosphoglycer
ate. - Coupled reactions in glycolysis are those
reactions catalyzed by hexokinase,
phosphofructokinase, glyceraldehyde-3-phosphate
dehydrogenase, phosphoglycerokinase, and pyruvate
kinase.
42- Isozymes allow for subtle control of the enzyme
to respond to different cellular needs. For
example, in the liver, LDH is most often used to
convert lactate to pyruvate, but the reaction is
often reversed in the muscles. Having a different
isozyme in the liver and the muscle allows for
those reactions to be optimized. - Fructose-1,6-bisphosphate can only undergo the
reactions of glycolysis. The components of the
pathway up to this point can have other metabolic
fates. - The physiologically irreversible glycolytic steps
are those catalyzed by HK, PFK and PK. Thus, they
are controlling points in glycolysis.
43- Hexokinase is inhibited by glucose-6-phosphate.
Phosphofructokinase is inhibited by ATP and
citrate. Pyruvate kinase is inhibited is
inhibited by ATP, acetylCoA and alanine. - Phosphofructokinase is stimulated by AMP and
fructose-2,6-bisphosphate. - Pyruvate kinase is stimulated by AMP and
fructose- 1,6-bisphosphate. - An isomerase is a general term for an enzyme that
changes the form of a substrate without changing
its empirical formula. - A mutase is an enzyme that moves a functional
group such as a phosphate to a new location in a
substrate molecule.
44- The glucokinase has a higher Km for glucose than
hexokinase. Thus, under conditions of low
glucose, the liver will not convert glucose to
glucose-6-phosphate, using a substrate that is
needed elsewhere. When the glucose concentration
becomes higher, however, glucokinase will
function to help phosphorylate glucose so that it
can be stored as glycogen. - The net yield of ATP from glycolysis is the same,
2 ATP, when either fructose, mannose, and
galactose is used. The energetics of the
conversion of hexoses to pyruvate are the same
regardless of hexose type. - The net yield of ATP is 3 from glucose derived
from glycogen because the starting material is
glucose-1-phosphate. One of the priming reactions
is no longer used.
45- A reaction with a negative ?Go is
thermodynamically possible under standard
conditions. - Individuals who lack the gene that directs the
synthesis of the M form of the enzyme PFK can
carry on glycolysis in their livers but suffer
muscle weakness because they lack the enzyme in
muscle. - The reaction of 2-PG to PEP is a dehydration
(loss of water) rather than a redox reaction. - The hexokinase molecule changes shape drastically
on binding to substrate, consistent with the
induced fit theory of an enzyme adapting itself
to its substrate.
46- ATP is an inhibitor of several steps of
glycolysis as well as other catabolic pathways.
The purpose of catabolic pathways is to produce
energy, and high levels of ATP mean the cell
already has sufficient energy. G-6-P inhibits HK
and is an example of product inhibition. If G-6-P
level is high, it may indicate that sufficient
glucose is available from glycogen breakdown or
that the subsequent enzymatic steps of glycolysis
are going slowly. Either way there is no reason
to produce more G-6-P. - Phosphofructokinase is inhibited by a special
effector molecule, fructose-2,6-bisphosphate,
whose levels are controlled by hormones. It is
also inhibited by citrate, which indicates that
there is sufficient energy from the TCA cycle
probably from fat or amino acid catabolism.
47- PK is also inhibited by acetylCoA, the presence
of which indicates that fatty acids are being
used to generate energy for the citric acid
cycle. - The main function of glycolysis is to feed carbon
units to the TCA cycle. When these carbon
skeletons can come from other sources, glycolysis
is inhibited to spare glucose for other purposes. - Thiamine pyrophosphate (TPP) is a coenzyme in the
transfer of 2-carbon units. It is required for
catalysis by pyruvate decarboxylase in alcoholic
fermentation. The important part of TPP is the
five-membered ring where a C is found between an
S and N. This carbon forms a carbanion and is
extremely reactive, making it able to perform
nucleophilic attack on carbonyl groups leading to
decarboxylation of several compounds in different
pathways.
48- TPP is a coenzyme required in the reaction
catalyzed by pyruvate carboxylase. Because this
reaction is a part of the metabolism of ethanol,
less will be available to serve as a coenzyme in
the reactions of other enzymes that require it. - Animals that have been run to death have
accumulated large amounts of lactic acid in their
muscle tissue, accounting for the sour taste of
their meat. - Conversion of glucose to lactate rather than
pyruvate recycles NADH. - The formation of fructose-1,6-bisphosphate is the
committed step in glycolysis. It is also one of
the energy-requiring steps of the said pathway.
49- A positive ?Go does not necessarily mean that the
reaction has a positive ?G. Substrate
concentrations can make a negative ?G out of a
positive ?Go. - The entire pathway can be looked at as a large
coupled reaction. Thus, if the overall pathway
has a negative ?G, an individual step may be able
to have a positive ?G and the pathway can still
continue.
50- In glycogen storage, the reactions that require
ATP are - 1. formation of UDP-glucose from
glucose-1-phosphate and UTP (indirect
requirement since ATP is needed to regenerate
UTP) (UDP-glucose phosphorylase) - 2. regeneration of UTP (nucleoside phosphate
kinase) - 3. carboxylation of pyruvate to oxaloacetate
(pyruvate carboxylase) - Reactions that produce ATP are NONE.
- Three differences between NADPH and NADH
- 1. phosphate at 2 position of ribose in NADPH
- 2. NADH is produced in oxidative reactions that
yield ATP while NADPH is a reducing agent in
biosynthesis. - 3. Different enzymes use NADH as a coenzyme
compared to those that require NADPH.
51- In glycogen storage, there is no reaction that
requires acetylCoA but biotin is required in the
carboxylation of pyruvate to oxaloacetate. - The four fates of glucose-6-phosphate are
- Converted to glucose (gluconeogenesis)
- Converted to glycogen (glycogenesis)
- Converted to pentose phosphates
- Hydrolyzed to pyruvate (glycolysis)
52- In making equal amounts of NADPH and pentose
phosphates, it only involves oxidative reactions.
In making mostly or purely NADPH, the use of
oxidative reactions, transketolase and
transaldolase reactions, and gluconeogenesis are
required. In making mostly or only pentose
phosphates, needed reactions are transketolase,
transaldolase, and glycolysis in reverse. - Transketolase catalyzes the transfer of 2-carbon
unit, whereas transaldolase catalyzes the
transfer of a 3-carbon unit. - It is essential that the mechanisms that activate
glycogen synthesis also deactivate glycogen
phosphorylase because they both occur in the same
cell compartment. If both are on at the same
time, a futile ATP hydrolysis results. On/off
mechanism is highly efficient in its control.
53- UDPG, in glycogen biosynthesis, transfers glucose
to the growing glycogen molecule. - Glycogen synthase is subject to covalent
modification and to allosteric control. The
enzyme is active in its phosphorylated form and
inactive when dephosphorylated. - AMP is an allosteric inhibitor of glycogen
synthase, whereas ATP and glucose-6-phosphate are
allosteric activators. - In gluconeogenesis, biotin is the molecule to
which carbon dioxide is attached to the process
of being transferred to pyruvate. The reaction
produces oxaloacetate, which then undergoes
further reactions of gluconeogenesis. Biotin is
not used in glycogenesis and PPP.
54- In gluconeogenesis, glucose-6-phosphate is
dephosphorylated to glucose (last step) in
glycolysis, G-6-P isomerizes to
fructose-6-phosphate (early step). - The Cori cycle is a pathway in which there is
cycling of glucose due to glycolysis in muscle
and gluconeogenesis in liver. The blood
transports lactate from muscle to liver and
glucose from liver to muscle. - There is a net gain of 3, rather than 2, ATP when
glycogen, not glucose, is the starting material
of glycolysis.
55- Control mechanisms are important in metabolism.
They are - Allosteric control (takes place in msec)
- Covalent control (takes place from s to min)
- Genetic control ( longer time scale)
- Enzymes, like all catalysts, speed up the forward
and reverse reaction to the same extent. Having
different catalysts is the only way to ensure
independent control over the rates of the forward
and the reverse process. - The glycogen synthase is an exergonic reaction
overall because it is coupled to phosphate ester
hydrolysis.
56- Increasing the level of ATP is favorable to both
gluconeogenesis and glycogen synthesis. - Decreasing the level of fructose-1,6-bisphosphate
would tend to stimulate glycolysis, rather than
gluconeogenesis and glycogen synthesis. - If a cell needs NADPH, all the reactions of the
PPP take place. If a cell needs
ribose-5-phosphate, the oxidative portion of the
pathway can be bypassed and only the nonoxidative
reshuffling reactions take place. The PPP does
not have a significant effect on the ATP supply
of a cell. - Glucose-6-phosphate is expectedly oxidized to a
lactone rather than an open-chain ester because
the latter is easy to hydrolyze.
57- In the PPP resshuffling reactions, without an
isomerase, all the sugars involved are keto
sugars that are not substrates for transaldolase.
- Sugar nucleotides (UDPG) have two phosphates
which when hydrolyzed drives towards the
polymerization of glycogen. Thus, they are fit
for glycogenesis.