Pseudopotential calculations of Porphyrin Complexes - PowerPoint PPT Presentation

About This Presentation
Title:

Pseudopotential calculations of Porphyrin Complexes

Description:

Title: Biomolecular calculations using ab-initio QMC conbined with FMO method Last modified by: Maezono Ryo Document presentation format: – PowerPoint PPT presentation

Number of Views:71
Avg rating:3.0/5.0
Slides: 18
Provided by: isspUtok
Category:

less

Transcript and Presenter's Notes

Title: Pseudopotential calculations of Porphyrin Complexes


1
Pseudopotential calculations of Porphyrin
Complexes
FADFT2007_at_ISSP, Japan.
Ryo Maezono
Tokyo
rmaezono_at_mac.com
School of Information Science,
Japan Advanced Institute of Science and
Technology, Ishikawa, Japan.
2
JAIST
Japan Advanced Institute of Science and
Technology.
From this year
- Kiyo TERAKURA organizes new Ab-initio Group
Research Center for Integrated Science (RCIS)
- Ryo MAEZONO (DMC) _at_ Informaton Science Dept.
3
Diffusion Monte Carlo
(c.f., Lectures by M. CASULA and J. Kolorenc)
- Independent from DFT framework.
4
Aim
Porphyrin, Phthalocyanine etc.
- Actively studied in Nano/Bio research field.
- Interplay between TM site and Side-chains.
Establish procedures for pseudo-pot. QMC
calculations.
suitable for stable DMC accumulation.
5
Background (1)
John TRAILs Pseudo potential studies.
J. Trail et.al., JCP 122, 174109 (2005).
- Non-diverging, non-local pseudo potentials.
avoiding eN-cusp.
Fock exchange.
QMC_pp
6
Pathology due to Non-locality
7
Interesting test case
Porphyrin, Phthalocyanine etc.
- Actively studied in Nano/Bio Science.
- Interplay between TM site and Side-chains.
Establish procedures for pseudo-pot. calculations.
suitable for stable DMC accumulation.
- Generate trial/guiding WF in pseudo-pot. calc.
- Basis set re-optimization.
8
Gaussian basis set with JRT pseudo.
(John R. Trail)
commonly used in Molecular Science, Bio-molecule
bussiness as well.
preparation of proper basis set.
9
Gaussian basis calculation with JRT pseudo.
Practical calculations after JRT2005
Lighter Ions.
I. Gurtubay et.al., JCP 124, 024318 (2006).
10
Procedure
LANL1DZ
the same core size as JRT pseudo.
11
QMC calculations
Cu-Porphyrin QMC_pp(all)
Cu
HFSCF
-206.4994
(hartree)
Variational
12
Jastrow Functions
lteegt
ltengt
lteengt
- Fixed cutoff lengths Lu5.0 a.u./ L?4.0
a.u./ Lf3.0 a.u./
- N.D.Drummond, M.D.Towler and R.J.Needs Phys.
Rev. B, 70, 235119 (2004)
13
Tendencies
B3LYP, DMC, MP2
Absolute values of energy
B3LYPltDMCltMP2
2 ha. (all) / 4 ha. (TM)
Energy Diff. ( binding )
? QMC not variational here.
MP2ltB3LYPltDMC
MP2ltDMCltB3LYP
Only for NiPo,
14
Notes
- Atomic calculation of Zn with LANL.
Though it is QUITE simple system,
VARMIN (Variance Minimization)
wont run even with reduced parameters into one.
? Try with latest scheme such as emin/madmin??
15
Summary
Replacing procedure of QMC pseudo potentials
suitable for stable DMC accumulation.
16
High Performance Computing Facilities
Hitachi SR11000
Cray T3E,XT3
SGI Origin2000,Origin3000,Altix3700,Altix4700
Fujitsu PrimePower,PrimeQuest
HP GS320, ES40, ES45, GS1280
IBM SP3, p690.
Clusters Pentium3,Opteron,Macintosh(Xeon)
17
Architectures
Write a Comment
User Comments (0)
About PowerShow.com