Title: Ecological dimensions in the SAF
 1Ecological dimensions in the SAF
SPICOSA Training Support Pack
Presentation outline
- Why do we need the ecological dimension? 
- Methodology and data inputs 
- Outcomes of a study site application (SSA) 
- Management implications
Material produced by Jakob Walve 
(Jakob.walve_at_ecology.su.se) 
 2Why do we need the ecological dimension?
SPICOSA Training Support Pack
- - There is an environmental problem to be solved! 
 In SPICOSA, problems related to e.g.
 eutrophication and declining fish stocks are
 addressed.
- - We want to achieve sustainable development, 
 with acceptable environmental impact and status,
 e.g. according to Water Framework Directive. In
 SPICOSA, e.g. the development of fisheries and
 mussel farming are explored.
Material produced by ltnamegt ltemail gt 
ltorganisation logogt 
 3Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Issue resolution What is the problem? What are 
 the objectives?
- System definition System boundaries? Key 
 ecological processes?
- Data needs / availability What data are 
 available or can be made available? What will
 available data allow or restrict? What new data
 can be collected? -The main idea is to make
 better use of existing data.
- Conceptual Model description of relationships 
 between system components, from expert knowledge.
 Forms the basis for the problem solving through
 numerical modelling. Often has to be simplified
 problem scaling.
- Formulation and Appraisal, i.e. Mathematical and 
 Numerical modelling Inputs from data are
 modulated by ecological transformation processes,
 described by mechanistic (process) or empirical
 (relational) knowledge, in a modelling software.
 Usually the objective is to determine the
 response of a few system properties to certain
 management options. Important steps are
 Calibration and Validation of the model using
 data from the studied system.
4SPICOSA Training Support Pack
- Issue resolution and System Definition 
- Example of Policy Issue and important ecological 
 processes illustrated with Overall Conceptual
 model
- Loch Fyne, a 60 km long fiordic sea loch on the 
 west coast of Scotland
- Example Policy Issue Managing Loch Fyne so as to 
 Maximize the Value of Ecosystem Goods and
 Services to the Local Economy
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design (fig. 3.1) 
 5Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Conceptual Model an example 
Example of fuzzy conceptual model of 
phytoplankton growth
The fuzzy model has to be made more precise by 
identifying and distinguishing state variables 
(stocks), fluxes and their controls 
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design 
 6Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Conceptual Model example expanded to include a 
 feedback loop
The conceptual model has been expanded to include 
a feedback loop the recirculation of nutrients 
from grazers
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design 
 7Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Conceptual Model expanded to include boundary 
 conditions
The conceptual model is expanded to include 
boundary conditions The boundary condition will 
be quantified inside a convertor rather than as 
a stock  because boundary conditions are outside 
the dynamic model and should not be changed as a 
result of what happens inside the model. Notice 
also that there has to be one exchange flow for 
every stock in the model.
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design 
 8Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Data needs/availability identifying the data 
 needs in the conceptual model for phytoplankton
Identifying data needs in the conceptual model 
for phytoplankton. In addition to this, there is 
need for calibration and validation data
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design 
 9Methodology Systems thinking is the key
SPICOSA Training Support Pack
- Conceptual Model simplified version 
The model often has to be or can be 
simplified. The model should be made as simple 
as possible, but still has to capture the 
essential dynamics of the system in relation to 
the objectives of the model
From SPICOSA Deliverable D.3.2. SAF Protocol on 
CZ System Design (fig. 8.2) 
 10Methodology applied in a case study
SPICOSA Training Support Pack
- Issue resolution Example Himmerfjärden SSA, 
 Sweden
Problems Reduced value due to relatively low 
water transparency, and loss of macrophytes. 
There is risk for cyanobacterial blooms if 
nitrogen loads are reduced. There is a general 
need to meet WFD requirements (ecological statsus 
is moderate to poor according to present 
classification). Export of nutrients to the 
Baltic Sea. Specific ecological questions What 
can be achieved by different measures (STP, 
agriculture). What will be the effect of 
improvements in the open Baltic Sea? What is the 
effect of moved STP discharge point (potentially 
affecting availability of nutrients in different 
parts of the estuary)? 
Himmerfjärden A brackish estuary in the Baltic 
Sea. 
- Water area 232 km2 
- Mean depth 17 m 
- Maximum depth 52 m 
- Salinity 4-7 
- Freshwater from 9 brooks and diffuse runoff 10 m3 
 s-1
- From Lake Mälaren 7 m3 s-1 
- From large sewage treatment plant (STP) 1.5 m3 s-1
10 km
Open Baltic Sea 
 11- System Definition Example Himmerfjärden SSA, 
 Sweden
The model boundaries were defined according to 
the existing divisions into drainage basins. 
We chose this area to simplify the model. This is 
the most impacted area. The black dot indicate 
sewage treatment plant (STP) discharge. The 
boundaries for the ecological model are the 
shorelines, i.e we do not model drainage basin 
processes, but estimate load reductions according 
to various scenarios of land use
The main fresh water input comes from Lake 
Mälaren through the city of Södertälje (most of 
Lake Mälaren discharge is through Stockholm). The 
large drainage basin of L.Mälaren is not shown 
here. 
The sea area was divided into three sub-basins 
according to natural dividers (sills) and 
available data (sampling stations shown as red 
dots) 
 12- Conceptual Model Himmerfjärden example, water 
 exchange
The water exchange conceptual model for the three 
sub-basins was first divided into only two depth 
layers, but was later developed into a 
three-layer model. This gave a more realistic 
model reflecting the actual sill depths between 
the basins. Still, of course, it is a 
simplification of the real world.
Legend for model
Box name
Volume (Mm3)
Salinity (avg. for 1997-2000)
depth
The numerical water-exchange model is heavily 
data-dependent Salinity data is used to 
calculate flows according to mass-balance. 
 13SPICOSA Training Support Pack
Conceptual Model Himmerfjärden example, Ecology
Version 2
Version 1
This version was the initial ecological 
conceptual model of the System Design step The 
link to water transparency Secchi depth was not 
shown, but was thought to be linked by empirical 
relationship with chlorophyll
This is how the model was actually developed as a 
first version. The first operational version was 
however further simplified (next slide...) 
 14SPICOSA Training Support Pack
Conceptual Model version3
Nitrogen loading
Total Nitrogen concentration
Water exchange
Secchi depth (water transparency)
Nitrogen retention
Secchi depth is estimated according to empirical 
relationship between nitrogen concentration and 
Secchi depth 
 15SPICOSA Training Support Pack
Conceptual Model version3 with main links to 
socioeconomic model shown
Nitrogen loading
Total Nitrogen concentration
Water exchange
Secchi depth (water transparency)
Nitrogen retention
Cost estimation of load reductions
Secchi depth is estimated according to empirical 
relationship between nitrogen concentration and 
Secchi depth
Economic valuation of gains 
 16SPICOSA Training Support Pack
In practise Overview of ExtendSim layout for 
Himmerfjärden Ecological model
WE Input data
FW inflow calculation
WE Const.
WE  Water exchange model FW  Fresh water
Basin 1
Basin 2
Basin 3
 Flow calculation
Water balance
Basin1 Salt balance
Salt balance
Example
Salinity error calculation
Nitrogen input data
Nitrogen calibration data
Nitrogen-data export function
Nitrogen balance 
 17SPICOSA Training Support Pack
Extend layout for Ecological model 
 18SPICOSA Training Support Pack
Hindcast (validation) results Himmerfjärden 
example
Loss of N during spring phytoplankton blooms
Variations in boundary conditions, nitrogen input 
and water exchange explain most of the variations 
in total nitrogen concentration. The biology 
added is a loss of nitrogen during the spring 
bloom, seen as a sudden drop in modeled nitrogen 
concentration (blue line) in spring. This model 
serves mainly one purpose to calculate total 
nitrogen concentrations and from these the water 
transpareny (Secchi depth) 
 19SPICOSA Training Support Pack
Results of two scenario runs in the preliminary 
version of the water-exchange/ecological model
1. Reference scenario 10 mg nitrogen per liter 
from sewage treatment plant (STP) 2. Improved 
sewage treatment scenario 4 mg N/ L from STP
Nitrogen loads to the model basin Himmerfjärden
Scenario 1
Scenario 2
STP
To Socio-economic model
Nitrogen load
Total nitrogen concentration
Secchi depth
Total nitrogen reduced from 390 to 320 µg/l in 
Himmerfjärden, the largest basin 
Load from STP reduced from 10 mg/l to 4 mg/l 
Secchi depth increased from 2.8 to 3.5m 
The model will have to be developed according to 
the Conceptual model version 2 (or some other 
idea with a simpler model) to anwer questions 
about nitrogen fixing cyanobacteria and 
chlorophyll concentrations 
 20SPICOSA Training Support Pack
- Numerical modelling Lessons learnt 
- Start simple construct Ball-park model that 
 works (is possible to run) and that is
 successively developed to a more advanced stage
 with tests at each stage
- Save new versions, and document the changes (at 
 least briefly)
21Management implications
SPICOSA Training Support Pack
- The model can be an important tool, but since it 
 is a simplification, and has certain objectives,
 it cannot answer everything. It may be more or
 less uncertain depending on how far scenarios are
 taken.
- The model will most likely be one decision 
 support tool among others! The most important
 tool is a good general and expert knowledge of
 the system! The model will not replace this!
- The model may highlight certain data needs. The 
 model may reduce data needs, but more likely it
 will be helpful in prioritizing which data to
 collect.
- Model may give results that the model does not 
 itself answer how to handle, e.g the costs for a
 Secchi depth improvement are higher than
 calculated gains, but may partly result from the
 fact that qualitative benefits may be difficult
 to value. Or that measures reducing
 eutrophication also decrease yield of fisheries.
 Or that banning of commercial fisheries in favour
 of tourist fishery may result in higher profits,
 but may be politically difficult.