Title: Ontology Generation and Applications
1Ontology Generation and Applications
- Dr. A.C.M. Fong, CEng
- Professor of Computer Engineering
- School of Computing and Mathematical Sciences
- Faculty of Design and Creative Technologies
- Auckland University of Technology
- afong_at_aut.ac.nz
2Contents
- Introduction Semantic Web and Ontology
- Related Work Ontology Generation
- Toward Automated Ontology Generation
- Fuzzy Ontology Generation Framework
- Application 1 Scholarly Info
- Application 2 Service Helpdesk
3IntroductionSemantic Web
- The basis for the Semantic Web is on its ability
to represent real-life domains accurately so that
it enables programs to completely understand the
environment in which they operate. - In summary, Semantic Web provides the following
benefits - SWeb offers an expressive metadata model to
represent data, so that data can be managed
effectively. - Programs can understand the semantic concepts
described in metadata used on Semantic Web.
Hence, knowledge carried on the Semantic Web can
be shared and reused among different programs. - Users can interact with programs using a semantic
query language to specify their requests and
thereby improving the retrieval performance. - Deductive mechanism that is used to derive new
information from existing information can be
described clearly, so that knowledge can be
reasoned with efficiently.
4IntroductionSemantic Web Architecture
5IntroductionSemantic Web Architecture - Layers
- Foundation Layer. Semantic Web uses Uniform
Resource Identifier URI to identify resources and
uses Unicode to encode the documents. - Schema Layer. This layer comprises XML NS
(Namespace) xmlschema layer and the RDF
rdfschema layer. - This layer defines objects and classes, their
relations and constrains. The XML Schema (XMLS)
and RDF Schema (RDFS), which are based on XML and
RDF respectively, are used for these layers. - RDFS has widely been used to describe classes at
the Schema Layers.
6IntroductionSemantic Web Architecture - Layers
- Ontology Layer. This layer provides constructs on
using meta-information to represent domain
knowledge. - In this layer, information is represented as
ontology, which is adopted by the Semantic Web to
define knowledge. - Logic Layer. This layer infers more knowledge
from the existing knowledge. It can be integrated
with the Ontology Layer. - In this layer, concepts and relationships defined
in lower layers are converted into
Turing-complete logic languages in order to
generate new knowledge.
7IntroductionSemantic Web Architecture - Layers
- Proof Layer. This layer provides a mechanism to
check whether a statement is true or not. - Trust Layer. This Layer provides a mechanism
which resolves conflicts between knowledge
carried by the Semantic Web to form the "Web of
Trust" - Digital Signature Layer. This layer uses public
key cryptography to secure documents.
8IntroductionOntology Definition
- Ontology has different definitions. A commonly
cited definition defines ontology as a formal,
explicit specification of a shared
conceptualization. - Conceptualization refers to an abstract model of
phenomena in the world by having identified the
relevant concepts of those phenomena. - Explicit means that the type of concepts used,
and the constraints on their use are explicitly
defined. - Formal should be machine readable.
- Shared should capture consensual knowledge
accepted by the communities.
9IntroductionOntology Research
- Ontology is regarded as a standard conceptual
model for knowledge representation, especially on
Semantic Web. - The term ontology engineering has been proposed
to imply ontology-related research in computer
science - Current interesting issues on ontology
engineering include ontology generation, ontology
mapping, ontology integration and ontology
versioning. - This presentation focuses on ontology generation.
10IntroductionOntology Description Languages
- Ontology is described using an ontology
description language. - Ontology description languages are based on Web
metadata description languages, which can be
classified into the following three groups - HTML-based
- XML-based
- RDF- based
11IntroductionHTML-based Ontology Description
Languages
- The tags supported by traditional Web are
sufficient to represent some semantic knowledge. - Simple HTML Extension (SHOE) and Ontobroker have
embedded additional tags into HTML to represent
knowledge. - However, HTML does not support self-defined tags.
Therefore, HTML-based approach is difficult to
define classes for ontology. - Hence, XML-based ontology description languages
have been proposed to overcome this limitation.
12IntroductionXML-based Ontology Description
Languages
- These languages are usually based on XML Schema
(XMLS) or Document Type Definition (DTD). - DTD allows users to define new markup types to
describe information. Therefore, users can define
ontology classes using DTD. - Moreover, XMLS supports the definition of
relations between classes. - Thus, XMLS and DTD can be used directly to embed
semantic information. - However, since XML actually only renders
syntactic support for knowledge representation,
XML-based ontology description languages face the
following problems when representing knowledge
13IntroductionXML-based Ontology Description
Languages
- A mechanism to define some relationships that are
usually central in ontologies such as is-a or
element-of relationships is lacking in XML. - XML does not support any notion of inheritance,
which is an important attribute in ontologies. - In XML, concepts are defined through tags, which
can be either a string or a combination of other
nested tags. Such mechanism may not be sufficient
for defining concepts in ontology, which may
require richer data structures to be represented. - In XML, the order of tags appearing in a document
must be previously defined. In contrast, the
ordering of attribute description does not matter
on ontology.
14IntroductionRDF-based Ontology Description
Languages
- RDF extends XML to become a standard for
knowledge representation. - In addition, RDF Schema (RDFS) can be used to
define classes and class hierarchies in a domain.
- The standardization supported by RDF provides two
important contributions - A standard set of modeling primitives (e.g.
class, instance, etc.) and their relationships
(e.g. subclass) are provided. - A standardized syntax for writing ontologies is
supported. - Popular RDF-based ontology description languages
include DARPA Agent Markup Language (DAML),
Ontology Inference Language (OIL), DAMLOIL and
Web Ontology Language (OWL)
15Introduction DARPA Agent Markup Language
- DAML or DAML-ONT extends RDFS to represent
ontology using the object-oriented approach. - It embeds some object-oriented concepts to
represent classes. Thus, the class representation
of DMAL-ONT is better than RDF. - Example of DAML-ONT to represent the class
"Journal", which is a subclass of the class
"Publication Medium", but is disjoint with
classes "Conference" and "Workshop" (i.e. an
object which belongs to class "Journal" can not
belong to classes "Conference" or "Workshop" - ltClass ID"Journal"gt
- ltsubClassOf resource"Publication Medium" gt
- ltdisjointFrom resource"Conference" gt
- ltdisjointFrom resource"Workshop" gt
- lt Classgt
16IntroductionOntology Inference Language
- OIL extends RDFS to represent ontology.
- It is designed based on three criteria
- Frame-based. It supports frames to define classes
and properties of classes. Thus, class contents
can be described more informatively (e.g.
constraints can be used for class properties) - Description Logic. It describes knowledge using
logic rules. Thus, knowledge is represented
mathematically and can be processed by programs. - Uses Web Standard. It is based on XML and RDFS.
17IntroductionOntology Inference Language
- ltrdfsClass rdfID"animal" gt
- ltrdfsClass rdfID"plant"gt
- ltrdfssubClassOfgt
- ltoilNOTgt
- ltoilhasOperand rdfresource"animal" gt
- ltoilNOT gt
- lt rdfssubClassOfgt
- lt rdfsClassgt
- ltrdfsClass rdfID"tree"gt
- ltrdfssubClassOf rdfresource"plant"gt
- lt rdfsClassgt
- Class "animal" is defined, followed by class
"plant", which is defined with the operator "NOT"
used to state that it is strictly not identical
with class "animal (i.e. objects which belong to
class "animal" can not belong to class "plant"
and vice-versa). - Finally, class "tree" is defined as a subclass of
"plant".
18IntroductionDAML vs. OIL
- Compared with DAML, OIL can represent class
properties better, but DAML can represent class
relationships more clearly. - Hence, they can be combined to form a better
ontology description language - DAML OIL
- It defines class relationships based on DAML.
- Class properties are defined in a similar way as
OIL. - Hence, DAMLOIL takes the advantages of both DAML
and OIL.
19IntroductionWeb Ontology Language
- OWL is extended from DAMLOIL to allow users to
define various types of relationships between
classes. - Properties can also be defined using additional
constructs in OWL. - OWL has three sublanguages
- OWL Lite
- OWL DL
- OWL Full.
20IntroductionWeb Ontology Language
- Even though there is the same OWL syntax used
among these sublanguages, they have a little
difference in design aimed at various communities
of implementers and users - OWL Lite only primarily supports classification
hierarchy and simple constrains when designing
classes. - OWL DL includes all OWL language constructs but
they can be used only under certain restriction
(e.g. a class cannot be an instance of another
class). - OWL Full allows all OWL language constructs to be
used without any restriction.
21IntroductionWeb Ontology Language
- ltrdfRDFgt
- xmlnsowl "http//www.w3.org/2002/07/owl"
- xmlnsrdf "http//www.w3.org/1999/02/22-rdf-synt
ax-nsl" - xmlnsrdfs"http//www.w3.org/2000/01/rdf-schema
" - xmlnsxsd "http//www.w3.org/2000/10/XMLSchema"
- xmlnsdaml"http//www.w3.org/2001/10/damloil"
- ltowlOntology rdfabout"Scholarly Information"gt
- ltowlversionInfogtv 1.0 2009-12-07
190640lt/owlversionInfogt - lt owlOntologygt
- ltowlClass rdfID"Concept1"gt
- ltowlrdfLabel"Data Mining"gt
- lt owlClassgt
- ltowlClass rdfID"Concept2"gt
- ltowlrdfLabel"Fuzzy Logic"gt
- lt owlClassgt
- lt owlClass rdfID"Concept2"gt
- lt owlClass rdfID"Concept3"gt
- ltowlrdfLabel"Data Mining, Fuzzy Logic" gt
- ltrdfsubClassOfgt
Header Info
Ontology Name and Version
3 classes Concept1 (labelled Data mining),
Concept2 (labelled Fuzzy Logic) and Concept3.
Concept3 is a subclass of both Concept 1 and
Concept2.
222. Related WorkOntology Generation
- Ontology uses classes, which contain attributes,
to represent concepts. - Ontology also supports taxonomy and non-taxonomy
relations between classes. - Although editing tools such as Protege 1 and
OilEd 2 have been developed to help users to
create and edit ontology, it is a tedious task to
manually derive ontology from data.
232. Related WorkOntology Generation Approaches
- Ontology can be generated from various types of
data, mostly textual. - Large corpora 3,4 are considered as good
sources for mining knowledge for constructing
ontology, since the information in the corpus is
usually well annotated. Therefore, it can be
easily processed by other programs. - Ontology can also be generated from a knowledge
base of rules 5, which is represented as a tree
with rules residing at tree nodes. Statistical
approaches have been used to estimate the
existence of relationships between entities
involved in rules 6.
242. Related WorkOntology Generation Approaches
- When knowledge is represented in semi-structured
schemata such as XML and RDF, its contents can
easily be parsed by programs techniques have
been proposed to generate ontology from
semi-structured schemata based on Graph Theory
7 and statistical approaches 8. - Learning Source Description (LSD) proposed 9 to
generate ontology from any arbitrary formalisms
of semi-structured schemata. - Entity-Relationship model used in database schema
has also been adopted as an information source
for generating ontology 10,11.
252. Related WorkOntology Generation Textual Data
- For textual data, ontology concepts can be
extracted efficiently using Natural Language
Processing (NLP) techniques 12,13. - NLP for preprocessing the textual data in order
to extract significant keywords. - WordNet 14 can be used to improve accuracy of
ontology generated by NLP-based techniques. - However, the NLP techniques have difficulty in
finding semantic relationships among the
keywords. - Data mining techniques can be combined with NLP
to improve the efficiency of ontology generation.
In Text-to-Onto 15, association rules are used
to find associative relations between keywords,
which are used to construct non-taxonomy
relations for the ontology.
262. Related WorkOntology Generation Textual Data
- Keywords' frequencies are often used in
statistical approaches 16,17 to identify
significant keywords that can be used to
represent a certain concept. - Clustering techniques have also been applied to
generate ontology from textual data 18. - Using significant keywords extracted from textual
data, clustering techniques can cluster documents
and interpret topics from the generated clusters.
272. Related WorkOntology Generation Clustering
- Clustering can be used to mine hidden knowledge
from data to construct an ontology. It can also
be used to enrich existing ontology. - Traditional clustering techniques are useful for
generating non-taxonomy relations for ontology. - In particular, conceptual clustering techniques
are powerful clustering techniques that can
conceptualize clusters and construct a concept
hierarchy of clusters useful for generating
taxonomy relations for ontology. - E.g. approach based on COBWEB 18 that can
generate taxonomy relations among concepts on a
domain for ontology generation. - Mo'K 19 is a system that can obtain taxonomy
relations from tagged text using conceptual
clustering.
282. Related WorkOntology Applications Scholarly
Info
- In E-Scholar Knowledge Inference MOdel (ESKIMO)
20, knowledge on scholarly publications is
represented as a simple ontology, known as
OntoPortal, which is manually developed and
maintained. - OntoPortal describes and provides links to other
external research pages on the Web. Hypertext
links between the web pages are also described in
the OntoPortal ontology. - ESKIMO allows users to retrieve scholarly
information from the constructed ontology by
using queries represented as Prolog-like rules.
292. Related WorkOntology Applications Scholarly
Info
- In the Scholarly Ontology Project 21, a digital
library Web server is constructed using Semantic
Web technologies in order to support scholarly
retrieval. - Developed using a collaborative approach in which
researchers will submit their documents in a
specifically structured format. - As such, the contents of the submitted documents
can be further processed in the system and
converted into scholarly ontology accordingly.
302. Related WorkOntology Applications Scholarly
Info
- In the Research in Semantic Scholarly Publishing
(RSSP) project, scientific publications are
collected from online archives such as the Open
Archive Initiative (OAI) 22. - Information of the documents (e.g. their authors,
titles, citations, publishers, etc.) is
extracted, indexed and converted into ontology
formalism. - DAMLOIL is used to annotate the ontology as
Semantic Web pages to support scholarly retrieval
312. Related WorkSummary
- Many techniques to construct ontology from
various data types/sources mainly textual data - Traditionally, NLP techniques are used to analyze
textual data. - Recently, data mining techniques have been
incorporated into NLP to further discover hidden
knowledge from textual data. - Conceptual clustering is an advanced data mining
technique that can organize data in a
hierarchical conceptual structure. - Thus, conceptual clustering is a useful technique
to discover knowledge for generating ontology
from textual data.
323. Toward Automated Ontology GenerationBasics
- Initial focus on Scholarly info
- Scholarly ontology generated directly from
explicit information on scientific publications
(e.g. their titles, authors, citations, etc.). - Other advanced scholarly knowledge such as
research experts and areas are usually inferred
manually by human experts.
333. Toward Automated Ontology GenerationBasics
- To construct scholarly ontology from citation
database, we use data mining techniques to
discover hidden knowledge in the database. - Data mining techniques include Context-based
Cluster Analysis (CCA) and Fuzzy Concept
Hierarchy Generation (FCHG) - Discovered knowledge then converted and
integrated into the ontology formalism. - As such, apart from the implicit information
available on scientific publications, Scholarly
Ontology can also support other useful scholarly
retrieval functions such as research experts
finding and trends detection
343. Toward Automated Ontology GenerationContext-ba
sed Cluster Analysis
- CCA is based on Formal Concept Analysis (FCA)
23 technique. - FCA provides a formal model, known as formal
context, to represent relations between objects
and attributes in a data set. - We use formal contexts to represent multiple
resultant clustering data. - Then, relations between the formal contexts are
analyzed to find the relations between the
corresponding resultant clustering data
353. Toward Automated Ontology GenerationFuzzy
Concept Hierarchy Generation
- Concept hierarchy is a data structure useful for
knowledge presentation. - Widely used in data mining applications.
- Size of a concept hierarchy may be large to
reflect the knowledge in a domain precisely. - Manual construction may be difficult and tedious.
- Need conceptual clustering
363. Toward Automated Ontology GenerationFuzzy
Concept Hierarchy Generation
- Many conceptual clustering techniques organize
knowledge as a concept hierarchy. It may not be
sufficient for representing information in a real
domain. - FCA, which is a data exploratory technique,
supports concept lattice that provides a more
informative conceptual model for representing
knowledge. - FCA-based conceptual clustering techniques are
potentially useful for constructing taxonomy
knowledge of ontology. - However, the typical FCA-based conceptual
clustering techniques do not support uncertainty
information.
373. Toward Automated Ontology GenerationFuzzy
Concept Hierarchy Generation
- Traditional FCA-based conceptual clustering
approaches cant represent vague information
Need fuzziness - L-Fuzzy context uses linguistic variables to
represent uncertainty in the context. - But needs human interpretation to define
linguistic variables. - Fuzzy concept lattice generated from L-fuzzy
context usually causes a combinatorial explosion
of concepts (compared to traditional concept
lattice)
383. Toward Automated Ontology GenerationFuzzy
Concept Hierarchy Generation
- We combine fuzzy logic and FCA as Fuzzy Formal
Concept Analysis (FFCA). - In FFCA, uncertainty information is directly
represented by a real number of membership value
in the range of 0,1. - Linguistic variables are no longer needed.
- Compared to fuzzy concept lattice generated from
L-fuzzy context, the fuzzy concept lattice
generated using FFCA will be simpler in terms of
the number of formal concepts. - It also supports a formal mechanism for
calculating concept similarities. - Based on FFCA, we propose the Fuzzy Conceptual
Clustering technique in FCHG to generate fuzzy
concept hierarchy.
394. Fuzzy Ontology Generation FrameworkFuzzy
Ontology
- Application of fuzzy logic offers a possible
solution for dealing with uncertainty information - Fuzzy ontology is generated and used in text
retrieval and search engines, where membership
values are used to evaluate the similarities
between the concepts in a concept hierarchy - Manual generation of fuzzy ontology from a
predefined concept hierarchy is a difficult and
tedious task that often requires expert
interpretation.
404. Fuzzy Ontology Generation FrameworkIntroductio
n
- Efficient method for generation of concept
hierarchy and fuzzy ontology is highly desirable - We propose a Fuzzy Ontology Generation Framework
(FOGF) that can automate fuzzy ontology
generation from uncertainty data based on Formal
Concept Analysis (FCA) theory - Generated fuzzy ontology is mapped to a semantic
representation in OWL
414. Fuzzy Ontology Generation FrameworkOverview
- Fuzzy Formal Concept Analysis incorporates fuzzy
logic into Formal Concept Analysis to represent
vague information - Concept Hierarchy Generation clusters the fuzzy
concept lattice generated by FFCA to construct a
concept hierarchy in two steps Fuzzy Conceptual
Clustering and Hierarchical Relation Generation - Fuzzy Ontology Generation constructs fuzzy
ontology from a fuzzy context using the concept
hierarchy created by fuzzy conceptual clustering - Semantic Representation Conversion make
knowledge accessible and sharable on the Web
environment. Use OWL
424. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Definition (Fuzzy Formal Context)
- A fuzzy formal context is a triple
- K (G, M, I ?(G ? M))
- where G is a set of objects, M is a set of
attributes, and I is a fuzzy set on domain G ? M.
- Each relation (g, m) ? I has a membership value
?(g,m) in 0,1.
434. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Fuzzy formal context can be represented as a
cross-table (Table 1) - An a-cut can be set to eliminate relations with
low membership values, e.g. a 0.5 (Table 2) - The context has 3 objects representing 3
documents, D1, D2 and D3. It also has 3
attributes, Data Mining, Clustering and
Fuzzy Logic representing 3 research topics. The
relationship between an object and an attribute
is represented by a membership value in 0, 1.
444. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Definition (Fuzzy Representation of Object)
- Each object O in a fuzzy formal context K can be
represented by a fuzzy set ?(O) as where A1,
A2,, Am is the set of attributes in K and µi is
the membership of O with attribute Ai in K. ? (O)
is called the fuzzy representation of O.
454. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Generally, we can consider the attributes of a
formal concept as the description of the concept.
- Thus, the relationships between the object and
the concept should be the intersection of the
relationships between the objects and the
attributes of the concept - Since each relationship between the object and an
attribute is represented as a membership value in
fuzzy formal context, the intersection of these
membership values should be the minimum of these
membership values, hence
464. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Definition (Fuzzy Formal Concept)
- Given a fuzzy formal context K (G, M, I) and a
confidence threshold T, we define A m ? M ?g
? A ?(g, m) ? T for A ? G and B g ? G ?m
? B ?(g,m) ? T for B ? M. A fuzzy formal
concept (or fuzzy concept) of a fuzzy formal
context (G, M, I) with a confidence threshold T
is a pair (Af ?(A), B) where A ? G, B ? M, A
B and B A. Each object g ? ?(A) has a
membership ?g defined as - ?g min (g,m)
- m ? B
- where ?(g,m) membership value between object g
and attribute m defined in I. If B then ?g
1 for every g. A and B are the extent and intent
of the formal concept (?(A), B) respectively.
474. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- This version of FFCA as presented in these
Definitions preserves differently continuous
values of objects memberships, crucial for
calculating concepts similarities. - In a formal context, a concept can have many
superconcepts and subconcepts. However, the
similarities of a concept to its superconcepts
and subconcepts are different. - With fuzzy concept lattice, we can make use of
the fuzzy set theory to calculate the
similarities between a concept and its
subconcepts.
484. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Definition (Fuzzy Formal Concept Cardinality)
- Since the fuzziness of a fuzzy formal concept is
represented by membership values of objects of
the concept, the cardinality of a fuzzy formal
concept Kf (?(A), B) is defined as Kf
?(A).
494. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Definition (Fuzzy Formal Concept Similarity)
- The similarity of a fuzzy formal concept Kf1
(?(A1), B1) and its subconcept Kf2 (?(A2), B2)
is defined as E(Kf1,Kf2) E(?(A1), ?(A2)).
504. Fuzzy Ontology Generation Framework Step 1
Fuzzy Formal Concept Analysis
- Fuzzy concept lattice generated from fuzzy formal
context in Table 2 (similarities between concepts
shown)
- Traditional concept lattice generated from Table
1 without membership values
Fig. 3
Fig. 2
514. Fuzzy Ontology Generation Framework Overview
524. Fuzzy Ontology Generation Framework Step 2
Concept Hierarchy Generation
- Concept Hierarchy Generation clusters the fuzzy
concept lattice generated by FFCA to construct a
concept hierarchy in two steps Fuzzy Conceptual
Clustering and Hierarchical Relation Generation
534. Fuzzy Ontology Generation Framework Step 2
a)Fuzzy Conceptual Clustering
- Compared to traditional clusters, the conceptual
clusters generated have the following properties - Each conceptual cluster is considered as a human
interpretable concept in the domain of the fuzzy
concept lattice - Each conceptual cluster is a sublattice extracted
from the fuzzy concept lattice - A formal concept must belong to at least one
conceptual cluster e.g. a scientific document can
belong to more than one research area
544. Fuzzy Ontology Generation Framework Step 2
a)Fuzzy Conceptual Clustering
- Conceptual clusters are generated based on the
idea at if a formal concept A belongs to a
conceptual cluster R, then its subconcept B also
belongs to R if B is similar to A. We can use a
similarity confidence threshold Ts to determine
whether two concepts are similar or not.
554. Fuzzy Ontology Generation Framework Step 2
a)Fuzzy Conceptual Clustering
- Definition (Conceptual Cluster).
- A conceptual cluster of a concept lattice K with
a similarity confidence threshold Ts is a
sublattice SK of K which has the following
properties - SK has a supremum concept CS that is not
similar to any of its superconcepts. - Any concept C ? CS in SK must have at least one
superconcept C ? SK so that E(C,C) gt Ts.
564. Fuzzy Ontology Generation Framework Step 2
a)Fuzzy Conceptual Clustering
- Fig. 5 shows the conceptual clusters generated
from the fuzzy concept lattice given in Fig. 3
with similarity confidence threshold Ts 0.5
Fig. 5
574. Fuzzy Ontology Generation Framework Step 2
b)Hierarchical Relation Generation
- Fuzzy conceptual clustering generates a set of
conceptual clusters SC. To construct a concept
hierarchy from the conceptual clusters, we need
to find the hierarchy relations from the
clusters. - We first define a concept hierarchy
- Definition (Concept Hierarchy)
- A concept hierarchy is a poset (partially ordered
set) (H,?) where H is a finite set of concepts,
and ? is a partial order on H.
584. Fuzzy Ontology Generation Framework Step 2
b)Hierarchical Relation Generation
- Definition of superconcept and subconcept
relations on conceptual clusters assures that
each conceptual cluster has at least one
superconcept, unless it corresponds to the root
node of the concept hierarchy generated. However,
we must prove that the ? relation is a partial
order. - Definition (Subconcept and Superconcept on a
Concept Hierarchy) - Let C1 and C2 be two conceptual clusters
corresponding to two sublattices L1 and L2 of a
fuzzy concept lattice F (K). Let the fuzzy formal
concept I be the supremum of L1, i.e. I
sup(L1). C1 is the subconcept of C2, denoted as
C1 ? C2 , if I is the subconcept of any concept
C ? L2, or I ? C where ? is the partial order
defined on F (K). Equivalently, C2 is the
superconcept of C1.
594. Fuzzy Ontology Generation Framework Step 2
b)Hierarchical Relation Generation
- Figure 8(b) illustrates the hierarchical
relations constructed from the conceptual
clusters given in Figure 8(a). Each concept in
the concept hierarchy is represented by a set of
its attributes. The supremum and infimum of the
lattice are considered as Thing and Nothing
concepts, respectively.
604. Fuzzy Ontology Generation Framework Overview
614. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- This step constructs fuzzy ontology from a fuzzy
context using the concept hierarchy created by
fuzzy conceptual clustering. - This is done based on the characteristic that
both FCA and ontology support formal definitions
of concepts. - However, a concept defined in FCA has both
extensional and intensional information in a
balanced manner, whereas a concept in ontology
emphasizes on its intensional aspect. - To construct the fuzzy ontology, we need to
convert both intensional and extensional
information of FCA concepts into the
corresponding classes and relations of the
ontology. - Thus, we define the fuzzy ontology as follows
624. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Definition (Fuzzy Ontology).
- A fuzzy ontology FO consists of 4 elements
(C,AC,R, X), where C set of concepts AC
represents a collection of attributes sets, one
for each concept R (RT, RN) represents a set
of relationships, which consists of 2 elements
RN is a set of non-taxonomy relationships and RT
is a set of taxonomy relationships. Each concept
ci in C represents a set of objects, or
instances, of the same kind. Each object oij of a
concept ci can be described by a set of
attributes values denoted by AC(ci). Each
relationship ri(cp,cq) in R represents a binary
association between concepts cp and cq, and the
instances of such a relationship are pairs of
(cp,cq) concept objects. Each attribute value of
an object or relationship instance is associated
with a fuzzy membership value between 0,1
implying the uncertainty degree of this attribute
value or relationship. X is a set of axioms. Each
axiom in X is a constraint on the concepts and
relationships attribute values or a constraint
on the relationships between concept objects
634. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Example (Fuzzy Ontology).
- the Scholarly Ontology OS (C, AC, R, X) is a
fuzzy ontology where its components are as
follows. - C Document, Research Area
- AC(Document) Name ,Author, Title,
Keywords, Abstract, Body, Publisher,
Publication Date - AC(Research Area) Name,Keyword
- RN belong-to(Document, Research Area),
consist-of(Research Area,Document) - RT superarea-of(Research Area, Research
Area), subarea-of(Research Area, Research
Area) - X Implies(Antecedent(consist-of(I-variable(x1)
I-variable(x2))) - Consequent(belong-to(I-variable(x2)
I-variable(x1)))) - Implies(Antecedent(belong-to(I-variable(x1)
I-variable(x2))) - Consequent(consist-of(I-variable(x2)
I-variable(x1)))) - Implies(Antecedent(superarea(I-variable(x1)
I-variable(x2))) - Consequent(subarea(I-variable(x2)
I-variable(x1)))) - Implies(Antecedent(subarea(I-variable(x1)
I-variable(x2))) - Consequent(superarea(I-variable(x2)
I-variable(x1))))
644. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
Figure 9. Fuzzy ontology generation process.
654. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Class Mapping furnishes C E, I in which E and
I are classes corresponding to extent and intent
of the fuzzy context. For example, the extent
class mapped from the extent of the fuzzy context
given in Table 1(b) can be labeled manually as
Document. We can use appropriate names to
represent keyword attributes and use them to
label the intent class names as well. For
example, the class Research Area can be used to
label the initial intent class.
664. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Taxonomy Relation Generation furnishes RT
superclass(I,I), subclass(I,I). Thus, the
hierarchical relations between instances of
intent classes are defined. Also, two rules are
added to X accordingly - superclass(X,Y)-subclass(Y,X).
- subclass(X,Y)-superclass(Y,X).
674. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Non-taxonomy Relation Generation furnishes RN
RIE(I,E), REI(E,I), in which REI is the
relation between the extent class and intent
class. RIE is the reversed relation of REI.
However, we still need to label the non-taxonomy
relation. For example, the relation between class
Document and class Research Area can be labeled
as belong-to, which implies that a document can
belong to one or more research areas. Also, two
rules are added to X accordingly - REI(X,Y)- RIE(Y,X).
- RIE (X,Y)- REI (Y,X).
684. Fuzzy Ontology Generation Framework Step 3
Fuzzy Ontology Generation
- Instances Generation generates instances set I
II, IE where II and IE are instances of the
intent and extent class. - Then, it furnishes membership values for the
instances attributes and relationships
694. Fuzzy Ontology Generation Framework Overview
704. Fuzzy Ontology Generation Framework Step 4
Semantic Representation Conversion
- The generated fuzzy ontology provides a
conceptual model of knowledge in the
corresponding domain - However, to make such knowledge accessible and
sharable, we must convert it into a semantic
representation that can be embedded into the
contents of Web pages. - In Semantic Web, ontology description language
such as OWL can be used to annotate ontology. - Therefore, the generated fuzzy ontology can be
automatically converted into the corresponding
semantic representation in OWL, in which each
class and instance is annotated as shown on the
next slide
714. Fuzzy Ontology Generation Framework Step 4
Semantic Representation Conversion
- Ontology for the concept hierarchy represented by
OWL - lt?xml version"1.0"?gtltrdfRDF
xmlnsrdf"http//www.w3.org/1999/02/22-rdf-syntax
-ns" xmlnsxsd"http//www.w3.org/2001/XMLSche
ma" xmlnsrdfs"http//www.w3.org/2000/01/rdf-
schema" xmlnsowl"http//www.w3.org/2002/07/o
wl" xmlns"http//www.owl-ontologies.com/unnam
ed.owl" xmlbase"http//www.owl-ontologies.com/
unnamed.owl"gt ltowlOntology rdfabout""/gt
ltowlClass rdfID"Concept_2"/gt ltowlClass
rdfID"Concept_1"/gt ltowlClass
rdfID"Concept_3"gt ltrdfssubClassOf
rdfresource"Concept_1"/gt ltrdfssubClassOf
rdfresource"Concept_2"/gt lt/owlClassgt
ltowlDatatypeProperty rdfID"Data_Mining"/gt
ltowlDatatypeProperty rdfID"DataMining"gt
ltrdfsdomain rdfresource"Concept_1"/gt
ltrdfsrange rdfresource"http//www.w3.org/2001/X
MLSchemafloat"/gt lt/owlDatatypePropertygt
ltowlDatatypeProperty rdfID"FuzzyLogic"gt
ltrdfsrange rdfresource"http//www.w3.org/2001/X
MLSchemafloat"/gt ltrdfsdomain
rdfresource"Concept_2"/gt lt/owlDatatypePropert
ygt ltConcept_2 rdfID"Document2"gt ltFuzzyLogic
rdfdatatype"http//www.w3.org/2001/XMLSchemaflo
at" gt0.87lt/FuzzyLogicgt lt/Concept_2gt
lt/rdfRDFgt
725. Scholarly OntologyOntology Generation
- Collected scientific documents on the research
area Information Retrieval published in
1987-1997 from ISI - Downloaded documents are preprocessed to extract
related information such as the title, authors,
citation keywords, and other citation information
- Extracted information then stored in a citation
database
735. Scholarly OntologyOntology Generation
- First, we construct a fuzzy formal context Kf
G,M,I, with G as the set of documents and M as
the set of citation keywords. The membership
value of a document D on a citation keyword CK in
Kf is computed as - where n1 is the number of documents that cite D
and contain CK, and n2 is the number of documents
that cite D - This formula is based on the premise that the
more frequent a keyword occurs in the citing
paper, the more important the keyword is in the
cited paper.
745. Scholarly OntologyOntology Generation
- Then, conceptual clustering is performed from the
fuzzy formal context - Each generated conceptual cluster represents a
research area - The generated conceptual clusters form a
hierarchy of research areas of documents in the
Citation Database, or Research Area Hierarchy
755. Scholarly Ontology Example of concept
hierarchy generated
Figure 11
- Each research area is represented by a set of
most frequent keywords occurring in the documents
that belong to that research area. In FFCA,
sub-areas inherit keywords from their
super-areas. Note that the inherited keywords are
not shown in Figure 11 when labeling the
concepts. Only keywords specific to the concepts
are used for labeling.
765. Scholarly Ontology Ontology Generation
- The generated ontology contains scholarly
information as a hierarchy of research areas as
well as research areas for each document. - Taking advantages of the Semantic Web, such
knowledge can be easily shared and reused by
other systems for browsing or retrieval. - For example, we can use Protégé-2000 for browsing
the scholarly ontology.
775. Scholarly Ontology Part of the generated
concept hierarchy of research areas
Fig. 12
We use the keyword that has the highest
membership value to label the research area.
Nevertheless, users can browse more information
of each research area.
785. Scholarly Ontology Performance Evaluation
- Performance of the ontology generation is
evaluated based on the generated Research Area
Hierarchy. - Firstly, we measure the typical recall, precision
and F-measure to evaluate the clustering results.
- Secondly, we use the relaxation error and the
corresponding cluster goodness measure to
evaluate the goodness of the conceptual clusters
generated. We also show whether the use of fuzzy
membership instead of crisp value can help
improve cluster goodness. - Finally, we use the Average Uninterpolated
Precision (AUP), which is a typical measure for
evaluating a hierarchical construct, to evaluate
the goodness of the generated concept hierarchy.
795. Scholarly Ontology Performance Evaluation
- Keyword attributes are descriptors for the
generated clusters, if more keywords are
extracted and used, the more meaningful the
cluster descriptors are constructed? - To verify this, we vary the number of keywords N
extracted from documents from 2 to 10, and the
similarity threshold Ts from 0.2 to 0.9 when
performing conceptual clustering - We have classified the documents downloaded from
ISI into classes based on their research themes.
These classes are used as a benchmark to evaluate
the clustering results in terms of recall,
precision and F-measure.
805. Scholarly Ontology Performance Evaluation -
Precision
Precision implies accuracy of the clustering
results. Table 6 shows that when N is small, the
precision is poor. It implies that noisy data
in clusters.
Table 6. Performance results using precision
measurement.
The precision is improved when the number of
extracted keywords is increased. However, this
will also cause the recall to decrease as shown
in Table 7.
815. Scholarly Ontology Performance Evaluation -
Recall
When the number of clusters is gradually
increased, the efficiency of the clustering
results will gradually be decreased.
Table 7. Performance results using recall
measurement.
825. Scholarly Ontology Performance Evaluation -
F-measure
When N is low, the F-measure is quite poor.
Nevertheless, the F-measure is stable and good
when a sufficient number of keywords are
extracted. The results also show that the
F-measure tends to have the best performance
when Ts 0.5.
Table 8. Performance results using F-measure
measurement.
835. Scholarly Ontology Performance Evaluation
Relaxation Error
- Relaxation error implies dissimilarities of items
in a cluster based on attributes values. - Since conceptual clustering techniques typically
use a set of attributes for concept generation,
relaxation error is quite commonly used for
evaluating the goodness of conceptual clusters.
845. Scholarly Ontology Performance Evaluation
Relaxation Error
- The relaxation error RE of a cluster C is defined
as - where A is the set of the attributes of items in
C, P(xi) is the probability of item xi occurring
in C and da(xi,xj) is the distance of xi and xj
on attribute a. - The cluster goodness G of cluster C is defined as
G(C) 1 - RE(C).
855. Scholarly Ontology Performance Evaluation
Relaxation Error
- Comparison of FFCA and COBWEB while the number of
extracted keywords is varied from 2 to 10
we vary the number of keywords extracted to
observe the effect of the keyword generated on
cluster goodness. Besides, since COBWEB is
considered as one of the most popular techniques
for conceptual clustering, we also apply COBWEB
to the citation database to compare the
performance. It shows that FFCA achieves better
cluster goodness than COBWEB
865. Scholarly Ontology Performance Evaluation
AUP
- Average Uninterpolated Precision (AUP) is defined
as the sum of the precision value at each point
(or node) in a hierarchical structure where a
relevant item appears, divided by the total
number of relevant items - Typically, AUP implies the goodness of a concept
hierarchical structure. - For evaluating AUP, we have manually classified
the downloaded documents into classes based on
their research themes. - For each class, we extract 5 most frequent
keywords from the documents in the class. Then,
we use these keywords as inputs to form retrieval
queries and evaluate the retrieval performance
using AUP
875. Scholarly Ontology Performance Evaluation
AUP
- There are two ways to generate document keywords.
The first is to use the set of keywords, known as
attribute keywords, from each conceptual cluster
as the document keywords. The second is to use
the keywords from each document as the document
keywords. Then, we vectorize the document
keywords and the input query, and calculate the
vectors distance for measuring the retrieval
performance.
885. Scholarly Ontology Performance Evaluation
AUP
- Two methods
- AUP measured using attribute keywords
Hierarchical Average Uninterpolated Precision
(AUP(H)), as each concept inherits attribute
keywords from its superconcepts. - AUP measured using keywords from documents
Unconnected Average Uninterpolated Precision
(AUP(U)).
895. Scholarly Ontology Performance Evaluation
AUP
- Fig. 14 shows the results for AUP(H) and AUP(U)
using different numbers of extracted keywords N.
It shows that when N gets larger, the
performance on AUP(H) and AUP(U) gets better. In
addition, performance on AUP(H) is generally
better than AUP(U). It means that the attribute
keywords generated for conceptual clusters are
appropriate
Fig. 14
906. Semantic Helpdesk Application Introduction
- Developed in collaboration with a multinational
company, the Semantic Help-Desk Environment
comprises the Web Service Requester, Matchmaking
Agent and Web Service Provider. - The focus is on the fuzzy ontology generation
process that generates Machine Service Ontology
from a customer service database. - This approach enables individual machine service
knowledge to be shared over the Semantic Web.
Thus, machine service knowledge from different
machines or models provided by different
manufacturers can be shared and integrated. This
is important as many customers may have different
types of machines and models from different
manufacturers.
916. Semantic Helpdesk Application Introduction -
Web Service Requester
- A kind of Web Service that enables access to
customer support for machine services. - Instances of the Web Service Requester can be
created from a Web Requester Server where its
address is accessible for all users through the
Web. - When encountering a problem, a user can use the
Web to connect the Web Requester Server in order
to create an instance of the Web Service
Requester. - The created instance runs as a web-based program.
That is, it can use the Web to interact with the
user and other programs.
926. Semantic Helpdesk Application Introduction -
Web Service Requester
- Through the Web, the Web Service Requester
instance provides an interface for the user to
enter their reported problem. - Through the interface, the user can specify the
encountered fault as a textual string. The user
is also required to enter the code of the machine
model. The given information is used to form a
profile for the Web Service Requester. - The profile is then sent as a request to the
Matchmaking Agent to seek a potential Web Service
Provider for solving the problem
936. Semantic Helpdesk Application Introduction -
Web Service Provider
- It offers its machine service support as a Web
Service extended with ontology capabilities. - There are probably many instances of a Web
Service Provider existing concurrently on the
Internet. - An instance of the Web Service Provider can be
considered as a program that can access the
Machine Service Ontology to retrieve machine
service knowledge for a given reported problem. - An instance of the Web Service Provider can
interact with other programs. That is, it can be
called by other programs and return the outputs
to the calling programs. - Instances of the Web Service Provider must be
registered with a specific agent known as the
Matchmaking Agent that serves as a registry and
look-up service.
946. Semantic Helpdesk Application Introduction -
Web Service Provider
- Each instance of the Web Service Provider also
provides a profile file that describes its
parameters and capabilities. XML is used in most
Web Services to represent the information
contained in the profiles. - However, traditional XML lacks the capabilities
of representing semantic information. - To overcome this problem, the Web Service
Provider uses ontology-based service description
language OWL-S (formerly DAML-S) to describe
information in its profile. Hence, we describe
the service as OWL ontology and its intentional
information can be fully understood by other
programs.
956. Semantic Helpdesk Application Introduction -
Matchmaking Agent
- When the Matchmaking Agent receives machine
service requests from the Web Service Requester,
it locates the appropriate Web Services that can
fulfill the request
966. Semantic Helpdesk Application Overview
976. Semantic Helpdesk Application Customer
Service Database
- The customer service database contains 9000
service records, each record consists of
fault-condition and checkpoint information - Fault-condition contains the service engineers
description of the machine fault. Checkpoint
information indicates the suggested actions to be
carried out to repair the machine based on the
occurred fault-condition given by the customer
986. Semantic Helpdesk Application Customer
Service Database
996. Semantic Helpdesk Application Machine
Service Ontology Generation
- Apply FOGF to obtain Fuzzy Fault Concept Lattice
? Fault Concept Hierarchy ? Machine Service
Ontology
Part of the Fault Concept Hierarchy of the
machine model AV_2011
1006. Semantic Helpdesk Application Machine
Service Ontology Generation
- The generation process creates classes, relations
and instances for the service ontology. - The machine fault service knowledge stored in the
Customer Service Database is known as
non-taxonomy knowledge, whereas the machine fault
hierarchy knowledge from the Fault Concept
Hierarchy is called taxonomy knowledge. These two
types of knowledge are combined to form the
Machine Service Ontology.
1016. Semantic Helpdesk Application Machine
Service Ontology in OWL
1026. Semantic Helpdesk Application Experiments
- Data stored in the database was divided into 10
subsets. Each subset was sequentially used as a
testing set while others were used for generating
conceptual clustering. - Keywords in fault conditions in each testing set
were extracted and fuzzified as testing fuzzy
queries. - To verify whether fuzzy queries can improve the
retrieval performance, the keywords extracted are
also used for retrieving without membership as
crisp queries for comparison.
1036. Semantic Helpdesk Application Experiments
- Manually classified faults in each machine model
into groups based on the machine components in
which the fault occurred. - Retrieval accuracy is evaluated based on the
number of the retrieved faults that are in the
same classified group with the query.
1046. Semantic Helpdesk Application Performance
Measures
- Recall, Precision and F-measure
1056. Semantic Helpdesk Application Retrieval
Performance
1066. Semantic Helpdesk Application Performance
Comparison
- Retrieval accuracy compared with four other
techniques - Two variations of k-nearest neighbor (kNN)
technique. The first variation (kNN1) is based on
vectors normalized Euclidean distance to perform
the retrieval. The second (kNN2) makes use of
fuzzy-trigram technique to do so. - Two kinds of artificial neural networks (ANN)
the supervised learning vector quantization
(LVQ3) neural network and the unsupervised
Self-Organizing Maps (SOM).
1076. Semantic Helpdesk Application Performance
Comparison
(Confidence Threshold 0.2)
- FFCA with fuzzy query outperformed kNN.
- LVQ3 performed marginally better, but requires
prior expert knowledge - for training, which would be a problem when
dealing with large amounts - of uncertainty information.
- The proposed technique can generate a concept
hierarchy from the - clusters, which is important information for
generating a corresponding - meaningful ontology.
1087. Summary
- Proposed a framework for fuzzy ontology
generation with uncertainty information - FOGF consists of the following steps
- Fuzzy Formal Concept Analysis
- Fuzzy Conceptual Clustering
- Fuzzy Ontology Generation
- Semantic Representation Conversion
1097. Summary
- FOGF can represent uncertainty information and
construct a concept hierarchy from the
uncertainty information - Apart from constructing scholarly ontology from
citation database, FOGF has also been used to
generate Machine Service Ontology for Semantic
Help-desk and Reuters News Topic Themes Ontology - Also, the scholarly ontology has been partially
used to construct a Scholarly Semantic Web, a
Semantic Web-based information retrieval system
to support scholarly activities in the Semantic
Web environment
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Slide 113