Title: Welcome%20to%20Biology%20(SBI4U)%20University%20Preparation
1Welcome to Biology (SBI4U) University Preparation
- Teacher Ms. Karellas
- Email georgia.karellas_at_yrdsb.ca
- Website karellas.weebly.com
2Course Outline
- Unit 1 - Biochemistry
- Students will analyse the technological
applications used in the food, pharmaceutical,
and medical industries that affect biological
processes and cellular functions. They will
investigate how molecules and their chemical
properties affect cellular processes and
biochemical reactions. Students will demonstrate
an understanding of the important structural and
functional roles compounds play in the cells of
all living organisms. - Unit 2 - Metabolic Processes
- Students will investigate the chemical changes
and energy conversions that occur in metabolic
processes. They will demonstrate the ways in
which an understanding of metabolic processes
enables people to make informed choices with
respect to a range of personal, societal, and
environmental issues. - Unit 3 - Molecular Genetics
- Students will demonstrate an understanding that
DNA contains all the genetic information for any
living organism. They will investigate how
proteins control a wide variety of cellular
processes. Students will assess the social,
legal, and ethical implications of genetic
research and biotechnology. - Unit 4 - Homeostasis
- Students will demonstrate an understanding of the
strict limits on the internal conditions that
organisms can tolerate. The will investigate the
ways in which organ systems that maintain
homeostasis rely on feedback mechanisms. Student
will explore the environmental factors that
affect homeostasis. - Unit 5 - Population Dynamics
- Students will demonstrate an understanding of how
population growth follows predictable patterns.
They will investigate how increased consumption
of resources and production of waste is
associated with population growth and results in
specific stresses that affect Earth's
sustainability. Students will assess
technological developments that can contribute to
or help offset the ecological footprint
associated with population growth and the
consumption of natural resources.
3Unit 1 Biochemistry
- Introduction to Biochemistry
- https//www.youtube.com/watch?vtpBAmzQ_pUE
4- Prior understanding
- Elements are pure substances that cannot be
broken down through chemical or physical methods,
elements consist of only one type of atom, an
atom is the smallest component of an element that
retains the properties of that element - A compound is a pure substance composed of two or
more elements chemically combined, there is a
specific ratio of types of atoms - Atoms contain a nucleus with protons and
neutrons, protons are positively charged and
neutrons have no charge - The number of protons defines the element i.e.
Carbon has 6 protons - Negatively charged electrons travel in orbits
(energy levels) around the nucleus, loss or gain
of an electron causes the formation of a charged
ion, electrons in the outer orbits are referred
to as valence electrons, negatively charged ions
are anions, positively charged ions are cations - The number of electrons in an uncharged atom is
the same as the number of protons - The number of protons and neutrons determines the
mass number of the element i.e. Carbon 12 has 6
protons and 6 neutrons
5Complete the Diagnostic
6Lesson 1Chemistry in Living Systems
- What is biochemistry?
- BRAINSTORM
- Biochemistry the branch of science dealing with
the chemical and physiochemical processes that
occur within living organisms.
7Organic Chemistry
- What is the difference between organic and
inorganic molecules? - Organic molecules
- usually contain CARBON and HYDROGEN
- Inorganic molecules
- usually do not contain CARBON
8Isotopes
- elements that contain atoms with the same number
of protons but different numbers of neutrons - the atomic number remains the same, the mass
number changes - C-12 has a mass 12, 6 protons and 6 neutrons
- C-13 has a mass 13, 6 protons and 7 neutrons
- C-14 has a mass 14, 6 protons and 8 neutrons
9- C-12 makes up 99 of the carbon in nature, C-14
is a radioisotope that breaks down to release
N-14, subatomic particles and energy - Radioisotopes decay in a predictable manner
called the half-life (time taken for one half of
the nuclei to decay)
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11- Organisms take in radioactive carbon dioxide from
the environment until the day they die but over
time the radioactive carbon will decay but
non-radioactive carbon will remain the same so
the ratio of radioactive carbon to
non-radioactive carbon can be used to date a
specimen
12Organic Elements and Bonding
- electrons occupy volumes of space around the
nucleus called orbitals or energy levels - 2 electrons occupy the first energy level (1s
orbital), 8 electrons occupy the second
energy level (2 in a 2s orbital, 6 in a 2p
orbital) - the outermost s and p orbitals are valence
orbitals, and the electrons in them are called
valence electrons - the chemical behavior of elements is determined
by these valence electrons
13Organic Elements and Bonding
- Atoms combine to make molecules.
- The bonds between atoms of the same molecule
(i.e. within the molecule) are intramolecular
bonds. -
- DEMO ?
14Organic Elements and Bonding
- The three types of intramolecular bonds are
- Non-Polar Covalent Bonds
- Polar Covalent Bonds
- Ionic Bonds
15- 1. Non-Polar Covalent Bonds
- Bond formed by sharing a pair
- of valence electrons between
- two atoms.
16- 2. Polar Covalent Bonds
- Bond formed by unequal sharing of a pair
- of valence electrons between two
- atoms.
- One atom is slightly negative one is
- slightly positive (dipole)
17- 3. Ionic Bonds
- Bond formed by transfer of electrons
- from atom to atom.
- This results in the formation of positive
- cation, and negative anion. Ions are held
- together by electrostatic attraction.
18- Ions are important in living systems
- H ions are important in cellular respiration
- Na ions are part of transport mechanisms that
enable molecules to enter cells - Ca ions are involved in nerve transmission
19The Role of Electronegativity
- Electronegativity is a measure of an atoms
ability to attract a shared electron pair in a
covalent bond - Each element in the periodic table has an
assigned electronegativity number (EN) - the
larger the number, the greater the greater the
pull on the electron pair - The element with the greater EN has a partial
(d-) charge, the element with the smaller EN has
a partial (d) charge
20- ?En is the difference between the
electronegativity number between two atoms
participating in a covalent bond - Electronegativity values can be found on a
periodic table.
21- Electronegativity difference
- determines the BOND TYPE
- ?En 0 is when atoms share electrons equally,
nonpolar covalent - ?En gt 0 lt 1.7 one atom attracts the
electrons more than the other, polar covalent
bond - ?En gt 1.7 or 1.7 electrons are gained by one
atom, lost by the other, (anions and cations),
ionic bond
22?En ?En
?En 0 ---0.5--------------gt 1.7
---------------gt 4.2 Non-polar polar
covalent ionic
23- EXAMPLE
- Bonds in Water (H2O)
- Oxygen electronegativity 3.44
- Hydrogen electronegativity 2.2
- Difference 3.44 2.2 1.24
- Bond Type ? Polar covalent
- In a water molecule the oxygen is slightly
negatively charged because it has a higher
electronegativity
24Learning Check!
- Determine the type of bond
- KCl
- CH4
- H2
25Learning Check!
- Determine the type of bond
- a) KCl
- K 0.9 Cl 2.9
- 2.9 0.9 2.0 ionic bond
- b) CH4
- C 2.5 H 2.1
- 2.5 2.1 0.4 non-polar covalent
- c) H2
- H 2.1
- 2.1 2.1 0 nonpolar covalent
26Organic Elements and Bonding
- The bonds between molecule intermolecular bonds.
- Weaker than intramolecular bonds
- DEMO ?
- Two types of intermolecular interactions are
particularly important for biological system
hydrogen bonding and hydrophobic interactions
27- Hydrogen bonding
- water is a polar molecule, attractions between
() ends and (-) ends are called hydrogen bonds
(see role of water) - FON
28- Hydrophobic interactions non-polar molecules
such as cooking oil and motor oil do not form
hydrogen bonds, but in the presence of polar
molecules such as water, they tend to clump
together, extruding water. - These are referred to as hydrophobic (water
fearing) - Polar molecules that form hydrogen bonds with
water are said to be hydrophilic (water loving) - DEMO ?
29Why is WATER a special molecule?
- Greater than 2/3 of body mass is water, lungs 90
water, bones 20 water, fat is 25 water - Controls body temperature, lubricates joints,
shock absorber in brain and spinal cord and
moisturizes surfaces - Polar covalent bonds and asymmetrical structure
creates a highly polar molecule
- Polarity of water allows it to form chemical
bonds with other molecules (adhesion), itself
(cohesion) and ions
30?En ?En
?En 0 ---0.5--------------gt 1.7
---------------gt 4.2 Non-polar polar
covalent ionic
31Learning Check!
- Determine the type of bond
- a) KCl
- K 0.9 Cl 2.9
- 2.9 0.9 2.0 ionic bond
- b) CH4
- C 2.5 H 2.1
- 2.5 2.1 0.4 non-polar covalent
- c) H2
- H 2.1
- 2.1 2.1 0 nonpolar covalent
32POLAR vs. NON-POLAR BONDS
- RECALL Intramolecular vs. Intermolecular bonds
- Electronegativity
- Elements have varying electronegativity (EN)
- i.e. how strongly an atom can attract electrons
- Non-Polar Covalent Bonds the atoms involved have
similar electro negativities, so the electrons
are equally shared. - (ex. H-H, O-O, C-H)
- Polar Covalent Bonds the atoms involved have
different electro negativities, so there is
unequal sharing of electrons. This results in a
separation of charge. - (ex. O-H)
33?En ?En
?En 0 ---0.5--------------gt 1.7
---------------gt 4.2 Non-polar polar
covalent ionic
34POLAR vs. NON-POLAR MOLECULES
- Polar bonds ? Polar molecule
- Non-polar bonds ? Non-polar molecule
- Polar Molecules
- If the molecule is asymmetrical and has polar
covalent bonds, the molecule will also be polar
(e.g. glucose) - These molecules are hydrophilic (water loving)
- Non-Polar Molecules
- Non polar molecules occur when a molecule has
non-polar covalent bonds (e.g. C-H backbone) OR - the polar covalent bonds are in a symmetrical
arrangement (e.g. CCl4) - These molecules are hydrophobic (water hating)
35Practice Questions
- 1.Do the following groups contain polar or
non-polar bonds? - -OH
- -COOH
- -NH2
- -PO4
- -CH2
- 2. Are the above groups hydrophobic or
hydrophilic? - 3. Are the following molecules polar or
non-polar? -
- 4. Why is this important for biology?
- (e.g. glucose, phospholipids)
36Practice Questions
- Do the following groups contain polar or
non-polar bonds? - -OH (polar) (hydrophilic)
- -COOH (polar) (hydrophilic)
- -NH2 (polar) (hydrophilic)
- -PO4 (polar) (hydrophilic)
- -CH2 (non-polar) (hydrophobic)
- Are the above functional groups hydrophobic or
hydrophilic? - Are the following molecules polar or non-polar?
- (polar) (non-polar)
- Why is this important for biology?
- (e.g. glucose, phospholipids)
37Functional Groups (aka reactive clusters)
- What are functional groups and why are they
important? - All the biological molecules we will be studying
have important functional groups which determine
their function and interactions in cells
38- With the exception of a few molecules (i.e.
carbon dioxide) compounds containing carbon are
referred to as organic compounds. The organic
molecules of importance to living organisms can
be classified into groups carbohydrates,
lipids, proteins and nucleic acids.
39- Carbon
- 4 valence electrons can form 4 covalent bonds
with other elements
40- attach to each other to form linear or branched
or ring structures and therefore are the backbone
of biological molecules - molecules with only carbon and hydrogen are
hydrocarbons, non-polar due to the symmetrical
arrangement of their bonds
41- other elements such as hydrogen, oxygen, sulfur,
nitrogen and phosphorus may also attach to the
carbon backbone to form functional groups
42Functional Groups
Group Chemical Formula Structural Formula
Hydroxyl -OH
Carboxyl -COOH
Amino -NH2
Sulfhydryl -SH
Phosphate -PO4
Carbonyl -COH or -CO-
Create Study Cards for each functional group to
REVIEW and ASSESS your learning of todays
lesson.
43Macromolecules of Life
44MINDS-ON Macromolecule Sorting Activity!
- Get into groups of 4
- Go to a station set up around the lab benches
- Using your understanding of functional groups,
sort the following molecules into the four
categories of macromolecules (carbohydrates,
lipids, proteins, and nucleic acids) paste them
on the sheet - First group to finish (correctly) gets a prize! ?
45Learning Goals
- Understand the structure and function of
carbohydrates - Understand that monosaccharides are the smallest
structural unit of carbohydrates - List and describe the 4 types of carbohydrates
monosaccharides, disaccharides, oligosaccharides,
polysaccharides - Demonstrate condensation and hydrolysis reactions
for carbohydrates
46- Macromolecules of Life
- What is a macromolecule?
- Macromolecules
- A large molecule (polymer) made of many smaller
structural units (monomers) linked together - 1)Carbohydrates
- 2)Lipids
- 3)Proteins
- 4)Nucleic Acids
47- Macromolecules are assembled and disassembled in
the same way - Monomers ? Polymer
- (Condensation/Dehydration Synthesis Reaction)
- anabolic reaction - large molecules are built
from small subunits - energy is required
- Water is released
48- Macromolecules are assembled and disassembled in
the same way - Polymer ? Monomer
- (Hydrolysis Reaction) hydro -water lysis
-broken - catabolic reaction - large molecules are broken
down into small subunits - energy is released
- Water is used
49Carbohydrates (CHO)
50Carbohydrates (CHO)
- What is the function of carbohydrates?
- Used as sources of energy
- -Glucose primary source of energy
- -Sucrose/Lactose dietary sugars
- Building materials
- Cell surface markers for cell-to-cell
communication -
51Carbohydrates
- Contain C, H, O in a 121 ratio
- Formula (CH2O)n (n of Carbons)
- Sugar names end in ose
- Simple Carbohydrates
- - Monosaccharide and Disaccharide
- Complex Carbohydrates
- -Polysaccharide and Oligosaccharide
52Simple Carbohydrates
- Monosaccharides the smallest structural unit
(monomer) of a carbohydrate - E.g. C6H12O6 Glucose, Fructose, Galactose
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54Numbering the Carbons
- monosaccharides with the same chemical formula
but different arrangement of atoms are called
isomers - i.e. C6H12O6 is glucose, galactose and fructose
55a-Glucose vs. ß-Glucose
When a glucose molecule forms a six-carbon ring
50 chance the -OH will be below the plane
(alpha) 50 chance the -OH will be above the
plane (beta)
56Simple Carbohydrates
- Disaccharides composed of two monosaccharides
(monomers) joined through a condensation
reaction, forming a glycosidic linkage (covalent
bonds) - Glucose Glucose Maltose
- Ex. Infant formula, Beer
- Glucose Fructose Sucrose
- Ex. Sugar cane, Table Sugar
- Glucose Galactose Lactose
- Ex. Milk
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58- Disaccharides/Polysaccharides can be broken down
through a hydrolysis reaction
59Complex Carbohydrates
- Oligosaccharides
- 3-10 monosaccharides linked
- glucose galactose fructose Raffinose
- Found in beans, peas, lentils, broccoli,
- asparagus
- Humans lack enzymes to digest oligosaccharides
(causes bloating, cramps, gas)
60Complex Carbohydrates
- Polysaccharides
- - gt 10 monosaccharides linked
- - Most are made up of hundreds of monosaccharides
bonded together - - Types
- 1. Starch glucose storage in plants
- 2. Glycogen glucose storage in animals
- 3. Dietary Fiber not used for energy
- -Cellulose structural support in plants
- -Chitin structural support in organisms
-
61Starch
- A starch molecule contains hundreds of glucose
molecules in either - branched chains Amylopectin or
- unbranched (coiled) chains Amylose
- Sources
- grains, dried beans, pasta, bread, potato
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63Glycosidic bonds in Starch
Coiled Branched
64Glycogen
- Found in liver and skeletal muscles
- Many branch points allows for rapid break down
for glucose to be released and used for energy
65Dietary Fiber
- Group of plant polysaccharides that are not
digested or absorbed in the human intestine
structural - Fibers Cellulose, Chitin
66Cellulose
- Structural support in plant cell walls
- Also used by humans in
- wood for lumber and paper, cotton and linen
for clothing - Straight chain polymer of ß 1-4 glycosidic
linkages
67Chitin
- Structure support - exoskeleton of insects,
crabs, lobsters, fungi cell wall - Also used in medicine contact lenses, surgical
thread
68Homework
- Carbohydrates Worksheet
- Have a great weekend! ?
69Lipids
- Triglycerides, Phospholipids, Sterols
70Lipids
- Lipids
- -composed of carbon, hydrogen, and oxygen atoms
- -higher proportion of non-polar C-H (high energy)
bonds makes lipids hydrophobic - What is the function of lipids?
- Provides long-term energy storage, cushions
organs, provides cell membrane structure,
synthesis of hormones - Four types
- 1) Triglycerides (fats)
- 2) Phospholipids
- 3) Steroids
- 4) Waxes
-
71Fatty Acids
- The building block (monomer) of lipids
- Chain of carbon atoms
- Carboxyl group (-COOH) at alpha (a-) end
- Methyl group (-CH3) at omega (?-) end
a
?
72How are fatty acids characterized?
- Based on
- Length of carbon chain
- Saturation
- Degree of Saturation
- Location of double bonds
- Hydrogenation
- Orientation of hydrogen around double bond
73Length of Carbon Chain
- Length of carbon chain
- - Short-chain fatty acids (lt8 carbons)
- - Medium chain fatty acids (8-12 carbons)
- - Long chain fatty acids (gt12 carbons)
74Saturation
- Saturated fatty acids
- have only single bonds between C atoms
- - contain maximum of H atoms possible
- Unsaturated fatty acids
- have one or more C-C double bonds
- - fewer than maximum of H atoms possible
- - formed by removing H atoms from molecule
75Degree of Saturation
- Saturated fatty acid
- Single carbon-carbon atoms
- Solid at room temperature
- Examples?
- Monounsaturated fatty acid
- 1 double bond
- Thick liquid at room temperature
- Examples?
- Polyunsaturated fatty acid (must be obtained
through diet) - gt 2 double bonds
- Liquid at room temperature
- Examples?
76Location of double bonds
- Omega number (where the 1st double bond is
located relative to the methyl-end) - Example Omega-3 and Omega-6 fatty acids
1 2 3 4 5 6
1 2 3
77Hydrogenation
- Double bonds carry a slightly negative charge,
and can accept positively charged hydrogen atoms
to create a saturated fatty acid
Polyunsaturated fatty acid
H H H H
Hydrogenated (saturated) fatty acid
78Orientation of Hydrogen around Double Bond
- Cis- double bond
- Hydrogen atoms are on the same side of
- the double bond
- Trans - double bond
- Hydrogen atoms are on opposite sides of double
bond -
-
79Fatty acid deficiencies
- Irritated flaky skin
- Gastrointestinal problems
- Compromised immune system
- Slow growth in children
- Reproductive failure
- Neurological and visual problems
801)Triglycerides
- Made up of 1 Glycerol and 3 Fatty Acids
ESTER BOND
81Triglyceride
Saturated fatty acid
Mono-unsaturated fatty acid
Poly-unsaturated fatty acid
822)Phospholipids
Head is polar (hydrophilic) glycerol,
phosphate, choline Tail is non-polar
(hydrophobic) fatty acids
- In FOOD
- Stabilizers in food
- Mayo and ice cream
- Phosphatidylcholine lecithin
- Soy products
1 Glycerol 2 fatty acids polar phosphate
group choline group
83In water
- Phospholipids form micelles
- Roles
- Plasma membrane
- Emulsifiers
843)Sterols/Steroids
- Four fused carbon rings with many different
functional groups
85- Steroids can be synthesized in the body
- Steroids can be obtained through diet
- from plants and animals
- only animals have cholesterol
- (meat, eggs, fish, dairy products)
- NOT all sterols are cholesterol!
86- Important Roles of Steroids
- Bile acids
- Precursor for the production of hormones
- Cholesterol found in cellular membranes
(provides support and fluidity) - In medicine used to reduce inflammation, skin
ointments, found in inhalers to treat asthma - Anabolic Steroids (synthetic) build muscle mass
in people who have cancer or AIDS (misused by
athletes!)
87Important for us because we build our steroid
hormones out of cholesterol
884)Waxes
- Lipids that contain long-chain fatty-acids linked
to alcohols or carbon rings solid at room
temperature - Produced in plants and animals
- Roles
- Cutin produced by plants to form a
water-resistant coating of the surfaces of stems,
leaves and fruit helps the plant conserve water - Birds produce waxy material (to keep their
feathers dry) - Bees make beeswax to make honeycombs
- Humans earwax (protects the ear canal)
89Negative Health Effects of Lipids
- Heart disease
- Cholesterol plaque deposits in the arteries of
the heart (narrowed arteries) - Cancer
- Breast cancer and Prostate cancer
- Association not as strong as between fat intake
and heart disease - Dietary fat may promote cancer once it has arisen
(does not initiate it) - Obesity
- - High fat food vs. high energy food (kcal from
carbs)
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91Positive Health Effects of Lipids
- Omega-3 Fats
- - Prevent blood clots
- - Protect against irregular heartbeats
- - Lowers blood pressure (especially for people
with hypertension and atherosclerosis)
92REVIEW CARBS and LIPIDS
- https//www.youtube.com/watch?vH8WJ2KENlK0
- Seatwork/Homework Lipids Worksheet
93Proteins
https//www.youtube.com/watch?vH8WJ2KENlK0
94Learning Goals
- Understand the function of proteins
- Identify and describe the structural units of
proteins (amino acids) - Describe and draw condensation and hydrolysis
reactions - Describe the four levels of protein structure
- Apply understanding of protein structure to
explain the process of denaturation
95Proteins
- What is the function of proteins?
- Speed up chemical reactions (catalysts),
transport specific substances, provide structure,
carry cellular messages, fight infectionand many
more!
96Proteins
- Amino acids the building blocks (monomers) of
proteins - The body uses 20 different types of amino acids
to make proteins - Consist of
- Central carbon bonded to hydrogen
- Amino group
- Carboxylic group
- R-group
The R group determines the FUNCTION of the
protein
97Types of Amino Acids
- Polar prefer an aqueous (water) environment
usually exposed on the surface of the protein - Non-polar do not prefer aqueous environment
usually make up the core of the protein - Electrically Charged positively or negatively
charged hydrophilic
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99Amino Acids
- Classification of Amino Acids in Nutrition
- 8 Essential a.a.
- - the body can NOT synthesize these
- - must be obtained through diet
- 12 Non-essential a.a.
- - The body can synthesize these from
- other sources
- TOTAL 20 a.a.
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101Proteins The peptide bond
- Proteins are formed when amino acid (monomers)
are linked together by peptide bonds - Proteins are broken down into amino acids by the
addition of water to break peptide bonds
102Proteins
- Dipeptide 2 amino acids linked by a peptide
bond - Tripeptide 3 amino acids linked by 2 peptide
bonds
103Levels of Protein Structure
- Primary
- Secondary
- Tertiary
- Quaternary
104Primary (1)Structure - Polypeptide
- sequence of amino acids (aa) polypeptide chain
- Critical to final protein structure and function
- Determines the chemical and physical
characteristics of the protein
- Sickle cell anemia single error in aa sequence
? affects folding ? rigid, sticky, sickle-shaped
red blood cells
105Secondary (2) Structure coils and folds
- As amino acids are added to the polypeptide
chain, it starts to fold along its length and
hydrogen bonds form between elements of the amino
acid backbone - Common patterns
- a- helix
- ß-folded sheets
106- a-helix
- Ex. Fibrous proteins such as a-keratin in hair
-
- ß-sheet two parts of polypeptide lie parallel
to one another - Ex. Proteins in silk used
- by spiders to make webs
107Tertiary (3) Structure
- Strong forces of attraction and repulsion between
the polypeptide its environment force further
folding into a tertiary structure - Interactions involve the R-groups
- Hydrogen bonds polar side chains
- Ionic bonds charged side chains
- van der Waals forces non-polar R groups
- Proline natural kink (in a-helix or ß-sheet)
- Disulfide bridge covalent bond between sulfur
containing R groups
108Strong stabilizer
109Quaternary (4) Structure the final shape
- Two or more folded polypeptide subunits come
together to make a functional protein - Physical and chemical environmental factors play
a role (aq, pH, temp) -
- Example Hemoglobin
110Protein Folding
- http//www.youtube.com/watch?vPjt1Q2ZZVjA
111Changes in 3D shape of protein
- Caused by changes in
- Temperature
- pH
- Ionic concentration
Protein Denaturation
- Useful Gastrin digestive enzyme works in stomach
(low pH) and inactive in small intestine (high
pH) - Dangerous Prolonged fever above 39C can denature
critical enzymes in brain ? death
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113The body burns
Fat
Protein
Not exclusive. All burned at the same time but
in different amounts, in that order.
114- Seatwork/Homework
- Macromolecule Chart
- (complete carbs, lipids, proteins)
- Quiz on TUES Carbs, Lipids, Proteins