CSCE 590I Bioinformatics Algorithms and Data Structures

About This Presentation

Title:

Description:

Number of Views:29

Avg rating:3.0/5.0

Slides: 11

Provided by: john244

Learn more at: https://www.cse.sc.edu

Category:

more less

Transcript and Presenter's Notes

Title: CSCE 590I Bioinformatics Algorithms and Data Structures

1
CSCE 590I Bioinformatics Algorithms and Data
Structures

2
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

Purpose of CSCE 590I
Familiarize students with algorithms data
structures for computational molecular biology
Develop a cadre of bioinformatics researchers in
CSE
Contribute to developing a bioinformatics
curriculum
This course will eventually become a standard
course offering.

3
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

CSE at USC is aggressively entering the field of
bioinformatics.
We offer fellowships in computational molecular
biology http//www.engr.sc.edu/release.asp?PID10
013
We currently collaborate with researchers in
Biology, Statistics, Mathematics, Pharmacy, and
Medicine
We need more capable student researchers.
Dr. Rose always has an ulterior motive for
anything he does.

4
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

5
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

CSE students are expected to have adequate STAT
and MATH background but probably not BIOL CHEM
Basic sequence in molecular biology genetics
BIOL 302
BIOL 303
BIOL 545
Prerequisites for the above sequence
BIOL 101 and 102
CHEM 111, 112, 333, and 334
Appropriate labs for listed BIOL and CHEM courses

6
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

Non-CSE students are expected to have adequate
STAT, MATH, BIOL CHEM but probably not CSE.
Basic CSE analytic background
CSCE 350
Transitive closure of CSE prerequisites for CSCE
350
CSCE 145
CSCE 146
CSCE 240
CSCE 245
Appropriate labs for listed CSCE courses

7
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

Expected Background(listed in no particular
order)
Biology or
Computer Science or
Math or
Statistics or
Biochemistry
The consequence is that you will have to apply
yourself to wrap your mind around ideas from
other disciplines.

8
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

Course Materials
Algorithms on Strings, Trees, and Sequencesby
Dan Gusfield, Cambridge University Press, 1997
(reprinted in 1999).
Research papers that Dr. Rose assigns.
Excerpts from books that Dr. Rose will provide.

9
CSCE 590I Special Topics Bioinformatics
Algorithms and Data Structures

Additional information describing this course can
be found on the course webpage.
This page will be updated regularly to reflect
the developments in this experimental course.
Yes, you are part of an experiment!
Now we will look at the class webpage and go over
course topics, grading, cheating policy, etc.
http//www.cse.sc.edu/rose/590I