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6'096 Algorithms for Computational Biology
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Context-Specific Bayesian Clustering for Gene Expression Data ... DDT. sorbitol. Nitrogen Dep. Diauxic shift. YPD. Starvation. YP. Steady. Promoters Analysis ...
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regulator, how does it control the. activity of that regulator ? ... SIR2, 3, and 4 have been found (SIR stand for silent information regulator) ...
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La chemioterapia adiuvante Lucia Del Mastro Istituto Naz. per la Ricerca sul Cancro - Genova Roma 18 Febbraio 2005 Adjuvant chemotherapy The present Anthracyclines ...
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Study of the Transcriptome of the Prematurely Aging Yeast Mutant dna2-1 Using a New Method Allowing Comparative DNA Microarray Analysis Isabelle Lesur Thesis defense ...
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Exp. cluster. Experiment. Goal: Find PRM structure that explains the data well ... Cluster coherence. Average variance reduction 0.69 - 0.61 in 3 iterations ...
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O U T L I N E. Conserved Mechanisms of Transcriptional Regulation from Yeast to Mammals ... that gene bears a binding site for. LexA. The Two Hybrid Assay ...
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Alignment score defined differently in probabilistic/combinatorial cases ... Keep the Cl best alignments A1, ..., ACt. ACGGTTG , CGAACTT , GGGCTCT ...
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... Mason, Rogers, Pregibon, Cortes 2000. University of Washington. 26. AD ... Saved AT&T 15M$ in the year 2000 in operations costs and missed opportunities. Recall ...
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Estoup et al (Evolution, 2005) Modelling invasions by cane toads ... loci sequenced in African, Asian and American samples, we show here by extensive ...
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TOPIC 1 Conserved Mechanisms of Transcriptional Regulation from Yeast to Human. ... Example: Rb represses the function of the mammalian transcription activator ...
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6.095/6.895 - Computational Biology: Genomes, Networks, Evolution Whole-genome comparative genomics Analyzing the human genome Lecture 21 Dec 6, 2005
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Transcriptional silencing is associated with Modification of nucleosomes that alters the accessibility of a gene to the ... Sir2 deacetylates nearby nucleosome.
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Automatically trades off fit to data (likelihood of data) with model complexity ... Handling time. Handling sequence data (TFs) Incorporate structure information ...
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Data analysis methods are crucial for understanding such data ... MIG1 CCCCGC, CGGACC, ACCCCG. GAL4 CGGGCC. Others CCAATCA. mean expression level -2 -1 ...
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