43 Vingron PPTs View free & download

Martin Vingron PowerPoint PPT Presentation

Martin Vingron - Family Specific Rates of Protein Evolution or, more general Markov models in protein evolution: Resolvent method, Systers, FSR Martin Vingron Max-Planck-Institut f r ...

Family Specific Rates of Protein Evolution or, more general Markov models in protein evolution: Resolvent method, Systers, FSR Martin Vingron Max-Planck-Institut f r ...

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Alignment principles and homology searching using (PSI-)BLAST PowerPoint PPT Presentation

Alignment principles and homology searching using (PSI-)BLAST - 1981 Smith-Waterman local pair- wise alignment ... This probability follows the Poisson distribution (Waterman and Vingron, 1994) ...

1981 Smith-Waterman local pair- wise alignment ... This probability follows the Poisson distribution (Waterman and Vingron, 1994) ...

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Binomial distributions PowerPoint PPT Presentation

Binomial distributions - ... linkage anslysis of quantitative traits in sibships, Genetic Epidemiology, 17, 102-117. ... Waterman, M. S. & Vingron, M [1994] Sequence comparison and Poisson ...

... linkage anslysis of quantitative traits in sibships, Genetic Epidemiology, 17, 102-117. ... Waterman, M. S. & Vingron, M [1994] Sequence comparison and Poisson ...

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Open access in the life sciences or Open access and the life sciences PowerPoint PPT Presentation

Open access in the life sciences or Open access and the life sciences - Open access and the life sciences. Martin Vingron, MPI for Molecular Genetics. Tradition in life sciences differs somewhat from physical sciences: ...

Open access and the life sciences. Martin Vingron, MPI for Molecular Genetics. Tradition in life sciences differs somewhat from physical sciences: ...

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T-Coffee: What PowerPoint PPT Presentation

T-Coffee: What - T-Coffee: What s New in The Grinder Mixing MSAs, Sequences and Structures C dric Notredame Information G n tique et Structurale CNRS-Marseille, France

T-Coffee: What s New in The Grinder Mixing MSAs, Sequences and Structures C dric Notredame Information G n tique et Structurale CNRS-Marseille, France

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Area Chair: - Max-Planck-Institute for Informatics, Saarb cken, Germany ... Application of DNA arrays in chromatin immuno precipitation gene regulation. Technologies I ...

Max-Planck-Institute for Informatics, Saarb cken, Germany ... Application of DNA arrays in chromatin immuno precipitation gene regulation. Technologies I ...

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q-gram Based Database Searching Using A Suffix Array (QUASAR) PowerPoint PPT Presentation

q-gram Based Database Searching Using A Suffix Array (QUASAR) - q-gram Based Database Searching Using A Suffix Array (QUASAR) S. Burkhardt. A. Crauser ... 13.270 seconds Search Time. QUASAR Test Run: 90 seconds Load Time ...

q-gram Based Database Searching Using A Suffix Array (QUASAR) S. Burkhardt. A. Crauser ... 13.270 seconds Search Time. QUASAR Test Run: 90 seconds Load Time ...

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T-Coffee: What - Residues are arranged so that those playing a similar role end up in ... 3D-Coffee and ... 3D-Coffee: Combining Sequences and Structures Within Multiple ...

Residues are arranged so that those playing a similar role end up in ... 3D-Coffee and ... 3D-Coffee: Combining Sequences and Structures Within Multiple ...

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TCoffee: Whats New in The Grinder - TCoffee: Whats New in The Grinder

TCoffee: Whats New in The Grinder

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Sequence database searching PowerPoint PPT Presentation

Sequence database searching - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

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Growing Trees on the Right Compost PowerPoint PPT Presentation

Growing Trees on the Right Compost - Title: Beyond ClustalW Author: Notredame Last modified by: Notredame Created Date: 6/12/2005 1:14:42 PM Document presentation format: On-screen Show

Title: Beyond ClustalW Author: Notredame Last modified by: Notredame Created Date: 6/12/2005 1:14:42 PM Document presentation format: On-screen Show

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Introduction to Bioinformatics PowerPoint PPT Presentation

Introduction to Bioinformatics - Title: PowerPoint Presentation Author: heringa Last modified by: Jaap Heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

Title: PowerPoint Presentation Author: heringa Last modified by: Jaap Heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show

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1-month Practical Course PowerPoint PPT Presentation

1-month Practical Course - 1-month Practical Course. Genome Analysis. Iterative homology searching ... E-value of a hit is 5, then five fortuitous hits with S x are expected within a ...

1-month Practical Course. Genome Analysis. Iterative homology searching ... E-value of a hit is 5, then five fortuitous hits with S x are expected within a ...

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Visualization of Multivariate Data PowerPoint PPT Presentation

Visualization of Multivariate Data - Max Planck Institute for Molecular Genetics ... lobular. 2. 4. Patient 2. mutant. ductal. 2. 3. Patient 1. p53. ER. Histo. Grade. Met. Node. Stage ...

Max Planck Institute for Molecular Genetics ... lobular. 2. 4. Patient 2. mutant. ductal. 2. 3. Patient 1. p53. ER. Histo. Grade. Met. Node. Stage ...

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Multiple Sequence Alignment PowerPoint PPT Presentation

Multiple Sequence Alignment - Global algorithms are often not effective for highly diverged sequences and do ... The MACAW and SeqVu program for Macintosh and GeneDoc and DCSE for PCs are free ...

Global algorithms are often not effective for highly diverged sequences and do ... The MACAW and SeqVu program for Macintosh and GeneDoc and DCSE for PCs are free ...

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Changement de repr PowerPoint PPT Presentation

Changement de repr - Etude comparative des codages des acides amin s. Alignement de s quences ... Le score d'un alignement d pend de la longueur de la zone de similitude que l'on ...

Etude comparative des codages des acides amin s. Alignement de s quences ... Le score d'un alignement d pend de la longueur de la zone de similitude que l'on ...

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English okay PowerPoint PPT Presentation

English okay - English okay? Masters studies offer tracks: This is part of: ... Global 'whole genome' (yeast, drosophila, mouse, man) Domain specific, e.g. cancer, infection ...

English okay? Masters studies offer tracks: This is part of: ... Global 'whole genome' (yeast, drosophila, mouse, man) Domain specific, e.g. cancer, infection ...

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Normalization of microarray data PowerPoint PPT Presentation

Normalization of microarray data - ... ratios from 4 red-green 8448-clone cDNA arrays hybridised with zebrafish samples. ... zebrafish data. Loess regression. Locally weighted regression. ...

... ratios from 4 red-green 8448-clone cDNA arrays hybridised with zebrafish samples. ... zebrafish data. Loess regression. Locally weighted regression. ...

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Trees - Trees what might they mean? Calculating a tree is ... MUSCLE. CONSENSE ... for quartets of species and building the multispecies tree from the quartets) ...

Trees what might they mean? Calculating a tree is ... MUSCLE. CONSENSE ... for quartets of species and building the multispecies tree from the quartets) ...

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Statistical Tools for Accessing PowerPoint PPT Presentation

Statistical Tools for Accessing - Conserved blocks in noncoding upstream regions (regulatory candidates) ... MEME. Motif set. CLOVER sequences. chromosome 21 & 22. Significantly enriched motifs ...

Conserved blocks in noncoding upstream regions (regulatory candidates) ... MEME. Motif set. CLOVER sequences. chromosome 21 & 22. Significantly enriched motifs ...

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Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation PowerPoint PPT Presentation

Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)

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Christine Steinhoff PowerPoint PPT Presentation

Christine Steinhoff - TGF-beta is a potent inducer of growth arrest in many cell types, including epithelial cells. ... Prostate. Salivarygland. Skeletalmuscle. Testis. Thymus ...

TGF-beta is a potent inducer of growth arrest in many cell types, including epithelial cells. ... Prostate. Salivarygland. Skeletalmuscle. Testis. Thymus ...

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Strategies for progressive alignment optimisation PowerPoint PPT Presentation

Strategies for progressive alignment optimisation - Position-Specific Iterated BLAST ... Up to 3-10 iterations are recommended ... E-value of a hit is 5, then five fortuitous hits with S x are expected within a ...

Position-Specific Iterated BLAST ... Up to 3-10 iterations are recommended ... E-value of a hit is 5, then five fortuitous hits with S x are expected within a ...

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Visualization of Multivariate Data - Max Planck Institute for Molecular Genetics. Visualization of ... Trends Genet. 1991. Affymetrix. Cy3/Cy5 Slides. Schena M, Schalon D, David RW, Brown PO ...

Max Planck Institute for Molecular Genetics. Visualization of ... Trends Genet. 1991. Affymetrix. Cy3/Cy5 Slides. Schena M, Schalon D, David RW, Brown PO ...

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Iterative homology searching using PSI-BLAST, scoring statistics and performance evaluation - Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)

Title: PowerPoint Presentation Author: heringa Last modified by: heringa Created Date: 2/20/2003 6:08:47 PM Document presentation format: On-screen Show (4:3)

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Growing Trees on the Right Compost - Growing Trees on the Right Compost. C dric Notredame. Comparative Bioinformatics Group ... Bruno Nyfler (VitalIT, CH) Roger Hersch (EPFL, CH) Pierre Dumas (EPFL, CH) ...

Growing Trees on the Right Compost. C dric Notredame. Comparative Bioinformatics Group ... Bruno Nyfler (VitalIT, CH) Roger Hersch (EPFL, CH) Pierre Dumas (EPFL, CH) ...

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Introduction to Bioinformatics - A model for database searching score probabilities ... to score further away from the expected mean value to become a significant hit. ...

A model for database searching score probabilities ... to score further away from the expected mean value to become a significant hit. ...

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MACHINE LEARNING TECHNIQUES APPLIED TO PROTEIN FOLD AND REMOTE HOMOLOGUE RECOGNITION PowerPoint PPT Presentation

MACHINE LEARNING TECHNIQUES APPLIED TO PROTEIN FOLD AND REMOTE HOMOLOGUE RECOGNITION - Goal - correct SCOP fold/superfamily prediction ... Currently increasing coverage of SCOP superfamilies and optimising existing ...

Goal - correct SCOP fold/superfamily prediction ... Currently increasing coverage of SCOP superfamilies and optimising existing ...

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Exploratory multivariate analysis of genome scale data ... Aed PowerPoint PPT Presentation

Exploratory multivariate analysis of genome scale data ... Aed - Exploratory multivariate analysis of genome scale data ... Aed n Culhane aedin@jimmy.harvard.edu Dana-Farber Cancer Institute/Harvard School of Public Health.

Exploratory multivariate analysis of genome scale data ... Aed n Culhane aedin@jimmy.harvard.edu Dana-Farber Cancer Institute/Harvard School of Public Health.

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Bioinformatics For MNW 2nd Year PowerPoint PPT Presentation

Bioinformatics For MNW 2nd Year - Title: Finding Patterns in Protein Sequence and Structure Author: mathbio Last modified by: heringa Created Date: 6/9/2002 12:55:37 AM Document presentation format

Title: Finding Patterns in Protein Sequence and Structure Author: mathbio Last modified by: heringa Created Date: 6/9/2002 12:55:37 AM Document presentation format

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Extrinsic Regularization in Parameter Optimization for Support Vector Machines PowerPoint PPT Presentation

Extrinsic Regularization in Parameter Optimization for Support Vector Machines - Title: Slide 1 Author: Matthew D. Boardman Last modified by: Matthew D. Boardman Created Date: 6/1/2006 3:30:16 PM Document presentation format: On-screen Show

Title: Slide 1 Author: Matthew D. Boardman Last modified by: Matthew D. Boardman Created Date: 6/1/2006 3:30:16 PM Document presentation format: On-screen Show

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Implementation of CC Web Services for the HOBIT Platform PowerPoint PPT Presentation

Implementation of CC Web Services for the HOBIT Platform - Berlin Center for Genome Based Bioinformatics. Eva Lange, October 2004 ... Eine Nachricht f r die Anfrage an die entfernte Prozedur. Eine Nachricht f r die Antwort ...

Berlin Center for Genome Based Bioinformatics. Eva Lange, October 2004 ... Eine Nachricht f r die Anfrage an die entfernte Prozedur. Eine Nachricht f r die Antwort ...

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Prediction of Local Structure in Proteins Using a Library of SequenceStructure Motifs PowerPoint PPT Presentation

Prediction of Local Structure in Proteins Using a Library of SequenceStructure Motifs - Similarity between a sequence and a cluster is defined by 'Cross-Entropy' ... Compute Histograms of dme & mda vs the paradigm over all segments in the cluster ...

Similarity between a sequence and a cluster is defined by 'Cross-Entropy' ... Compute Histograms of dme & mda vs the paradigm over all segments in the cluster ...

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Machine Learning PowerPoint PPT Presentation

Machine Learning - C E N T R F O R I N T E G R A T I V E E B I O I N F O R M A T I C S V U Lecture 3 Machine Learning (Elena Marchiori s s adapted) Bioinformatics Data Analysis ...

C E N T R F O R I N T E G R A T I V E E B I O I N F O R M A T I C S V U Lecture 3 Machine Learning (Elena Marchiori s s adapted) Bioinformatics Data Analysis ...

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Microarray Data Analysis PowerPoint PPT Presentation

Microarray Data Analysis - Efficiencies of Cy5, Cy3 Labelling - Variation of Low-Intensities ... (pins, PCR plates, nonlinearity of labelling) - overall nonlinear data ...

Efficiencies of Cy5, Cy3 Labelling - Variation of Low-Intensities ... (pins, PCR plates, nonlinearity of labelling) - overall nonlinear data ...

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QUASAR - QUASAR. Q-gram Based Database Searching Using a Suffix Array ... QUASAR was developed to quickly detect sequences with strong similarity to the ...

QUASAR. Q-gram Based Database Searching Using a Suffix Array ... QUASAR was developed to quickly detect sequences with strong similarity to the ...

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Integrating Biological Information In Multiple Sequence Alignments PowerPoint PPT Presentation

Integrating Biological Information In Multiple Sequence Alignments - Abraham Wald's Work on Aircraft Suvivability, J. American ... Canary Island to Japan : 3,700 km (Reality: 12,000 km.) The More Structures The Merrier ...

Abraham Wald's Work on Aircraft Suvivability, J. American ... Canary Island to Japan : 3,700 km (Reality: 12,000 km.) The More Structures The Merrier ...

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Gaussian Mixture Density Estimation applied to Microarray Data PowerPoint PPT Presentation

Gaussian Mixture Density Estimation applied to Microarray Data - Making sense of microarray data distributions. Bioinformatics, 18, 576-84. ... We first analyzed data derived from a human X chromosome-specific cDNA array ...

Making sense of microarray data distributions. Bioinformatics, 18, 576-84. ... We first analyzed data derived from a human X chromosome-specific cDNA array ...

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Course Comparative Genomics PowerPoint PPT Presentation

Course Comparative Genomics - Classical notion ' a gene encodes a function' (pea-flower color) ... State of the art approaches use a combination of ab-initio gene prediction with ...

Classical notion ' a gene encodes a function' (pea-flower color) ... State of the art approaches use a combination of ab-initio gene prediction with ...

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A stepwise procedure for conditional testing of GO term PowerPoint PPT Presentation

A stepwise procedure for conditional testing of GO term - A stepwise procedure for conditional testing of GO term overrepresentation Constantin Georgescu The human genome The whole hereditary information of an organism ...

A stepwise procedure for conditional testing of GO term overrepresentation Constantin Georgescu The human genome The whole hereditary information of an organism ...

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LSM2104 Part II Lectures 3 and 4 PowerPoint PPT Presentation

LSM2104 Part II Lectures 3 and 4 - Derivation of PAM and BLOSUM and Scoring Matrices. Basic Introduction to Dynamic Programming Techniques ... MSA ( Gupta, Kececioglu & Schaffer, 1995) MACAW ( Schu ...

Derivation of PAM and BLOSUM and Scoring Matrices. Basic Introduction to Dynamic Programming Techniques ... MSA ( Gupta, Kececioglu & Schaffer, 1995) MACAW ( Schu ...

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Finding Regulatory Motifs in DNA Sequences PowerPoint PPT Presentation

Finding Regulatory Motifs in DNA Sequences - Finding Regulatory Motifs in DNA Sequences. An Introduction to Bioinformatics ... THE DEATH'S HEAD A BEE LINE FROM THE TREE THROUGH THE SHOT, FIFTY FEET OUT. ...

Finding Regulatory Motifs in DNA Sequences. An Introduction to Bioinformatics ... THE DEATH'S HEAD A BEE LINE FROM THE TREE THROUGH THE SHOT, FIFTY FEET OUT. ...

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Comparison of Various Normalisation Strategies for Microarray Analysis PowerPoint PPT Presentation

Comparison of Various Normalisation Strategies for Microarray Analysis - In microarray experiments the expression levels of thousands of genes are being ... [1] Dudoit S, Yang YH, Speed TP, Callow MJ; Statistica Sinica, 12:111-139, 2002 ...

In microarray experiments the expression levels of thousands of genes are being ... [1] Dudoit S, Yang YH, Speed TP, Callow MJ; Statistica Sinica, 12:111-139, 2002 ...

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Vingron PowerPoint PPT Presentations