Software engineering challenges in bioinformatics

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Software engineering challenges in bioinformatics

• 26th International Conference on Software
  Engineering (ICSE'04)
• By Jonathan Barker, Janet Thornton Publication
  Date May 2004 pp. 12-15Poster by Bertha Lee

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Challenges

• data integration
• Storage
• Organization
• Retrieval
• Analysis
• presentation

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Summary of Paper

• Identify the challenge
• Cause of challenge
• Solution to the Challenge

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Data and tool

• Raw Data
• Sequence Data
• Database
• PDB, E-MSD , CATH
• Tool
• SOAP
• BLAST

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Whos in the Field
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Presentation of Data

• Molecular view
• Network view
• Hierarchical view
• Bird View
• 3D graphic display

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Data Standardization

• Gather Data in a standardized format
• Create communication among tools
• Include software engineering and data
  administrator

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Presentation

• Navigation is the Key

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critique
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Question??

• What are the challenges Software engineering in
  Bioinformatics are facing?
• What is the cause of these Challenges?
• Do you think authors proposal will solve the
  problem and why?