Hands-On Exercise: Grain Yield after Milling

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Hands-On Exercise Grain Yield after Milling

• RiceCAPS Gramene Workshop
• 6/8/06

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1. Conduct a trait search for milling yield.
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• The QTL search for milling yield came up empty.
  Dont give up yet
• Search site or Literature
• Search Ontologies

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Search the whole database for information on it
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Determine synonyms
Or the ontologies option for searching
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Search Ontologies

• Try a different term. milling
• Try a different term. mill

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Search for mill
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Back to CMap view
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View in browser
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Zoom in/out to a desired level of resolution
Click on a feature to open menu options
Features! Those above your sequence are on the
forward strand, ones below are on the reverse
strand
Select options to customize the view.
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Diversity
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Lemont Teqing
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Compare Germplasm in Diversity
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Intro to Pathways search by gene
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Protein complexes
Gene
EC number of catalyzing enzyme
A line from a gene to a circle - the gene codes
for the protein Two circles linked together - a
gene product is a subunit of a protein complex
Circle connected to reaction -reaction is
catalyzed by enzyme.
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Compound (red text). Click for more info
Reaction (blue line) Click to go to reaction page
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Thank You!

• In this exercise you have simply begun to learn
  what Gramene can do.
• For more complete details on all the features
  available from each module, review the module
  tutorials available on the web.
• Use the feedback button at the top of every page
  to submit private questions to the Gramene team.
  The appropriate person will get back to you.
• For public discussion, join the Gramene
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