Some Examples of Networks in Cytoscape

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Some Examples of Networks in Cytoscape
Institute for Systems Biology Bellevue School
District
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Networks in EcologyFood Webs
http//staff.harrisonburg.k12.va.us/gharper/bay/w
eboflifepage/foodweb.jpg
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Put this food web into cytoscape
An Ocean Food Web
Nodes organisms
Edges/arrows flow of energy
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A Food WebSalmon
Nodes organisms
Arrows represent flow of energy
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Cell Phone Network
Nodes people/phones
Here we track the flow of information analogous
to the flow of energy in a food web
Edges can call
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Gene Networks, etc
Nodes can represent genes, proteins, etc
Edges can represent interaction between stimuli
(such as presence of light or sugar) and a
receptor, promoter, etc
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Network Model helpful for large systems, lots
of information
Figure 3 Screening DNA-damage phenotypes against
a scaffold of molecular interactions. A large
molecular interaction network was integrated with
1615 yeast deletion phenotypes gathered
systematically in response to MMS exposure.
http//www.genome.org/cgi/content/full/13/11/2498