Organism as a Common Data Element

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Organism as a Common Data Element

• Peter McGarvey, Baris Suzek, Craig Street,
  Tommie Curtis, Vishal Nayak, Juli Klemm

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Previous Model of Taxonomy CDE
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Organism Models used in caBIG
FunctionExpress
GoMiner
cancerMolecularPages
SEED
caBIO
PIR
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New Model of Organism CDE
domainOrganism (collection) idlong
Object ID ncbiTaxonomyIDstring
10090 scientificNamestring Mus
musculus commonNamestring house
mouse taxonomyRankstring species
ethnicityStrainstring A/J Mouse
domainOrganismName (optional collection)
idlong Object ID valuestring
Minie mouse valuestring Mickey
mouse sourcestring Disney commentstring
synonym