AP Biology

1
AP Biology

• Living Metabolism
• Part 2

2
Proteins
3
2 structure
4
.
Course of reaction without enzyme
EA without enzyme
EA with enzyme is lower
Reactants
Free energy
Course of reaction with enzyme
DG is unaffected by enzyme
Products
Progress of the reaction
5
.
Substrate
Active site
Enzyme-substrate complex
Enzyme
6
.
Substrates enter active site enzyme changes
shape so its active site embraces the substrates
(induced fit).
Substrates held in active site by
weak interactions, such as hydrogen bonds
and ionic bonds.

• Active site (and R groups of
• its amino acids) can lower EA
• and speed up a reaction by
• acting as a template for
• substrate orientation,
• stressing the substrates
• and stabilizing the
• transition state,
• providing a favorable
• microenvironment,
• participating directly in the
• catalytic reaction.

Substrates
Enzyme-substrate complex
Active site is available for two
new substrate molecules.
Enzyme
Products are released.
Substrates are converted into products.
Products
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R groups of Amino Acids
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Optimal Performance
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2 structure
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3 Structure
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Denaturation of a protein
12
.
Substrate
A substrate can bind normally to the active site
of an enzyme.
Active site
Enzyme
Normal binding
A competitive inhibitor mimics the substrate,
competing for the active site.
Competitive inhibitor
Competitive inhibition
A noncompetitive inhibitor binds to the enzyme
away from the active site, altering
the conformation of the enzyme so that its active
site no longer functions.
Noncompetitive inhibitor
Noncompetitive inhibition
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Reaction rates for each condition
14
.
Allosteric activator stabilizes active form.
Allosteric enzyme with four subunits
Active site (one of four)
Regulatory site (one of four)
Activator
Active form
Stabilized active form
Oscillation
Allosteric inhibitor stabilizes inactive form.
Non- functional active site
Inhibitor
Stabilized inactive form
Inactive form
Allosteric activators and inhibitors
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Feedback Inhibition or Negative Feedback
Initial substrate (threonine)
Active site available
Threonine in active site
Enzyme 1 (threonine deaminase)
Isoleucine used up by cell
Intermediate A
Feedback inhibition
Enzyme 2
Active site of enzyme 1 cant bind theonine pathwa
y off
Intermediate B
Enzyme 3
Intermediate C
Isoleucine binds to allosteric site
Enzyme 4
Intermediate D
Enzyme 5
End product (isoleucine)
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.
Binding of one substrate molecule to active site
of one subunit locks all subunits in active
conformation.
Substrate
Stabilized active form
Inactive form
Cooperativity another type of allosteric
activation
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Proteins involved in constructing a red blood
cellQuaternaryStructure
Polypeptide chain
b Chains
Iron
Heme
a Chains Hemoglobin
Polypeptide chain
Collagen