159 Ecocyc PPTs View free & download

The EcoCyc and MetaCyc Pathway/Genome Databases PowerPoint PPT Presentation

The EcoCyc and MetaCyc Pathway/Genome Databases - Ocelot Storage System Architecture. Persistent storage via disk files, Oracle DBMS ... DBMS is submerged within Ocelot, invisible to users ...

Ocelot Storage System Architecture. Persistent storage via disk files, Oracle DBMS ... DBMS is submerged within Ocelot, invisible to users ...

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Genome Annotation PowerPoint PPT Presentation

Genome Annotation - Annotation to identify and describe all the physico-chemical, ... Roche/Boeringer. http://www.expasy.org/cgi-bin/search-biochem-index. EcoCyc. www.ecocyc.org ...

Annotation to identify and describe all the physico-chemical, ... Roche/Boeringer. http://www.expasy.org/cgi-bin/search-biochem-index. EcoCyc. www.ecocyc.org ...

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Importing GO terms from UniProt to a PGDB PowerPoint PPT Presentation

Importing GO terms from UniProt to a PGDB - Importing GO terms from UniProt to a PGDB Markus Krummenacker Bioinformatics Research Group SRI International kr@ai.sri.com GO in EcoCyc Introduction GO (http ...

Importing GO terms from UniProt to a PGDB Markus Krummenacker Bioinformatics Research Group SRI International kr@ai.sri.com GO in EcoCyc Introduction GO (http ...

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Pathway Tools / BioCyc Fundamentals PowerPoint PPT Presentation

Pathway Tools / BioCyc Fundamentals - Pathway Tools / BioCyc Fundamentals Peter D. Karp, Ph.D. Bioinformatics Research Group SRI International pkarp@ai.sri.com BioCyc.org EcoCyc.org, MetaCyc.org, HumanCyc.org

Pathway Tools / BioCyc Fundamentals Peter D. Karp, Ph.D. Bioinformatics Research Group SRI International pkarp@ai.sri.com BioCyc.org EcoCyc.org, MetaCyc.org, HumanCyc.org

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-Ontologies:%20Bio-Ontologies:%20Their%20Creation%20and%20Design PowerPoint PPT Presentation

-Ontologies:%20Bio-Ontologies:%20Their%20Creation%20and%20Design - The Fourth Annual Bio-Ontologies Meeting 'Sharing Experiences and ... EcoCyc (uses Ocelot) and RiboWeb (uses Ontolingua) Logic-based: Description Logics ...

The Fourth Annual Bio-Ontologies Meeting 'Sharing Experiences and ... EcoCyc (uses Ocelot) and RiboWeb (uses Ontolingua) Logic-based: Description Logics ...

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Pathways and Molecules: Noodles and Meatballs in the Metabolite Soup PowerPoint PPT Presentation

Pathways and Molecules: Noodles and Meatballs in the Metabolite Soup - EMP enzymology and metabolism data. MetaCyc metabolic pathways. EcoCyc E. coli genome and metabolism. PathDB biological pathways and networks ...

EMP enzymology and metabolism data. MetaCyc metabolic pathways. EcoCyc E. coli genome and metabolism. PathDB biological pathways and networks ...

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Ontology Cogito: Understanding what it is PowerPoint PPT Presentation

Ontology Cogito: Understanding what it is - Knowledge all information and an understanding to carry out tasks and ... EcoCyc (uses Ocelot) and RiboWeb (uses Ontolingua) Logic-based: Description Logics ...

Knowledge all information and an understanding to carry out tasks and ... EcoCyc (uses Ocelot) and RiboWeb (uses Ontolingua) Logic-based: Description Logics ...

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Pathway%20Tools%20User%20Group%20Meeting%20Introduction PowerPoint PPT Presentation

Pathway%20Tools%20User%20Group%20Meeting%20Introduction - Read the release notes! SRI International. Bioinformatics. Behind the Scenes. 330,000 lines of code, mostly Common Lisp. 4.5 programmers ...

Read the release notes! SRI International. Bioinformatics. Behind the Scenes. 330,000 lines of code, mostly Common Lisp. 4.5 programmers ...

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Administering Pathway Tools PowerPoint PPT Presentation

Administering Pathway Tools - Obtaining Pathway Tools. Free for non-commercial use. To obtain license ... Napster Comes to Bioinformatics. Public sharing of Pathway/Genome Databases ...

Obtaining Pathway Tools. Free for non-commercial use. To obtain license ... Napster Comes to Bioinformatics. Public sharing of Pathway/Genome Databases ...

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The BioCyc Collection of PathwayGenome Databases PowerPoint PPT Presentation

The BioCyc Collection of PathwayGenome Databases - Acids. Res. 33:D334 2005 ASM News 70:25 2004 Science 293:2040 ... Nucleic Acids Research 34:D511-D516 2006. SRI International. Bioinformatics. Comparative Tools ...

Acids. Res. 33:D334 2005 ASM News 70:25 2004 Science 293:2040 ... Nucleic Acids Research 34:D511-D516 2006. SRI International. Bioinformatics. Comparative Tools ...

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- The 'Two' Fates of Pyruvate. from Alberts et al. Molecular Biology of the Cell. TCA Cycle ... What are some of the possible fates of pyruvate in E. coli? ...

The 'Two' Fates of Pyruvate. from Alberts et al. Molecular Biology of the Cell. TCA Cycle ... What are some of the possible fates of pyruvate in E. coli? ...

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And now for our Feature presentation: Automatic Loading of Protein Sequence Annotation Data from Uni PowerPoint PPT Presentation

And now for our Feature presentation: Automatic Loading of Protein Sequence Annotation Data from Uni - Automatic Loading of Protein Sequence Annotation Data from UniProt to Pathway ... between variants due to human activity, variants within an organism, and ...

Automatic Loading of Protein Sequence Annotation Data from UniProt to Pathway ... between variants due to human activity, variants within an organism, and ...

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For your exam preparation: relevant topics from lectures 13-26 - For your exam preparation: relevant topics from lectures 13-26

For your exam preparation: relevant topics from lectures 13-26

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pyruvate decarboxylase PowerPoint PPT Presentation

pyruvate decarboxylase - 1

1

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Overview of the Pathway Tools Software and Pathway/Genome Databases PowerPoint PPT Presentation

Overview of the Pathway Tools Software and Pathway/Genome Databases - What do you hope to get out of the tutorial? SRI International. Bioinformatics. SRI ... Mike McLeod, University of British Columbia, Rhodococcus sp. RHA1 ...

What do you hope to get out of the tutorial? SRI International. Bioinformatics. SRI ... Mike McLeod, University of British Columbia, Rhodococcus sp. RHA1 ...

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An Ontology for Subcellular Localization PowerPoint PPT Presentation

An Ontology for Subcellular Localization - Compartmentalization forms groups which allows for abstraction of concepts (i.e. mitochondria) ... Prediction based on sequence: PSORT predicts proteins in ...

Compartmentalization forms groups which allows for abstraction of concepts (i.e. mitochondria) ... Prediction based on sequence: PSORT predicts proteins in ...

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Biological Storytelling: A Software Tool for Biological Information Organization Based upon Narrative Structure PowerPoint PPT Presentation

Biological Storytelling: A Software Tool for Biological Information Organization Based upon Narrative Structure - Understanding the Molecular Basis of Disease ... Paul Meltzer, Mike Bittner, Yidong Chen, and Jeff Trent. Formative discussions. Bob Allen (UMD) ...

Understanding the Molecular Basis of Disease ... Paul Meltzer, Mike Bittner, Yidong Chen, and Jeff Trent. Formative discussions. Bob Allen (UMD) ...

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Bereich 3: V10 - Integrative Biologie PowerPoint PPT Presentation

Bereich 3: V10 - Integrative Biologie - Title: Computational Biology - Bioinformatik Author: Volkhard Helms Last modified by: Volkhard Helms Created Date: 1/8/2002 4:03:31 PM Document presentation format

Title: Computational Biology - Bioinformatik Author: Volkhard Helms Last modified by: Volkhard Helms Created Date: 1/8/2002 4:03:31 PM Document presentation format

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Bio-Trac 25 (Proteomics: Principles and Methods) PowerPoint PPT Presentation

Bio-Trac 25 (Proteomics: Principles and Methods) - Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

Title: Protein Family Classification for Functional Genomics Author: wuc Last modified by: zh9 Created Date: 3/9/2001 10:06:29 PM Document presentation format

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Bio-Trac 25 (Proteomics: Principles and Methods) - Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

Molecular Biology Database Collection (http://nar.oupjournals.org/cgi/content ... WIT: Functional Curation and Metabolic Models. BRENDA: Enzyme Database ...

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System%20Structures%20Identification PowerPoint PPT Presentation

System%20Structures%20Identification - System Structures Identification Contents of research on gene regulatory networks all components of the network, the function of each component, Interactions;

System Structures Identification Contents of research on gene regulatory networks all components of the network, the function of each component, Interactions;

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GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective - GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

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FunCatTM,%20a%20controlled%20vocabulary%20encompassing%20the%20biology%20of%20prokaryotes,%20plants%20and%20animals%20from%20cellular%20to%20systemic%20level - Biomax Informatics AG Bioinformatics designed with you in mind. ... Univocal attribution. Test for completeness. Test for consistence ...

Biomax Informatics AG Bioinformatics designed with you in mind. ... Univocal attribution. Test for completeness. Test for consistence ...

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GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective PowerPoint PPT Presentation

GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective - GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

GENOME ANNOTATION AND FUNCTIONAL GENOMICS The protein sequence perspective

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Overview of Genome Databases PowerPoint PPT Presentation

Overview of Genome Databases - Definition of Bioinformatics ... For many years, the majority of bioinformatics DBs did not employ a DBMS ... Warehouse schema defines many bioinformatics datatypes ...

Definition of Bioinformatics ... For many years, the majority of bioinformatics DBs did not employ a DBMS ... Warehouse schema defines many bioinformatics datatypes ...

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Identify Pathway Hole Fillers PowerPoint PPT Presentation

Identify Pathway Hole Fillers - Steps that must be completed before running the Pathway Hole Filler ... Conceptual stages of the pathway hole filler. 1. Prepare training data for Bayes classifier ...

Steps that must be completed before running the Pathway Hole Filler ... Conceptual stages of the pathway hole filler. 1. Prepare training data for Bayes classifier ...

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V19 Metabolic Networks Introduction PowerPoint PPT Presentation

V19 Metabolic Networks Introduction - Different levels for describing metabolic networks by computational methods: ... network (i.e. acetate, ethanol, lactate, succinate, formate, pyruvate etc. ...

Different levels for describing metabolic networks by computational methods: ... network (i.e. acetate, ethanol, lactate, succinate, formate, pyruvate etc. ...

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Bioinformatic Databases PowerPoint PPT Presentation

Bioinformatic Databases - 500,000 medical articles/year. 4,000,000 scientific articles/year ... Science Citation Index. http://isi4.isiknowledge.com/portal.cgi. Your Local eLibrary ...

500,000 medical articles/year. 4,000,000 scientific articles/year ... Science Citation Index. http://isi4.isiknowledge.com/portal.cgi. Your Local eLibrary ...

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Genomics - Genomics. The Human Genome Project. Mapping and Sequencing the Genomes of Model Organisms ... Lander and Waterman equation. poisson distribution. Po = e-m ...

Genomics. The Human Genome Project. Mapping and Sequencing the Genomes of Model Organisms ... Lander and Waterman equation. poisson distribution. Po = e-m ...

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aaacacTTGA TActgtatga gcatacagTA TAATtgcttc Aacagaacat attgactatc c PowerPoint PPT Presentation

aaacacTTGA TActgtatga gcatacagTA TAATtgcttc Aacagaacat attgactatc c - activates some promoters when glucose is absent. bind to promoter. lexA repressor protein. represses promoters of DNA-repair genes ...

activates some promoters when glucose is absent. bind to promoter. lexA repressor protein. represses promoters of DNA-repair genes ...

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Protein Pathways and Pathway Databases PowerPoint PPT Presentation

Protein Pathways and Pathway Databases - All pathways are networks of interactions, however not all networks are ... Chemical substructure comparison. Enzymes,Transcription Factors. Genes: Blast search ...

All pathways are networks of interactions, however not all networks are ... Chemical substructure comparison. Enzymes,Transcription Factors. Genes: Blast search ...

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Pathways Databases: A Case Study in Computational Symbolic Theories PowerPoint PPT Presentation

Pathways Databases: A Case Study in Computational Symbolic Theories - Imagine a car factory that not only produces cars, but produces other factories ... Results of a search changed the simplistic notion of what gene is ...

Imagine a car factory that not only produces cars, but produces other factories ... Results of a search changed the simplistic notion of what gene is ...

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Describing%20the%20Quality%20of%20Knowledge%20Contained%20in%20Biological%20and%20Medical%20Knowledge%20Bases PowerPoint PPT Presentation

Describing%20the%20Quality%20of%20Knowledge%20Contained%20in%20Biological%20and%20Medical%20Knowledge%20Bases - Describing the Quality of Knowledge Contained in Biological and Medical Knowledge Bases ... KB - a centralized repository for information, ... graf. Model ...

Describing the Quality of Knowledge Contained in Biological and Medical Knowledge Bases ... KB - a centralized repository for information, ... graf. Model ...

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GENOME%20ANNOTATION%20AND%20FUNCTIONAL%20GENOMICS%20The%20protein%20sequence%20perspective - Availability of good, well annotated protein sequence and pattern databases ... Protein sequence can come from gene predictions, literature or peptide sequencing ...

Availability of good, well annotated protein sequence and pattern databases ... Protein sequence can come from gene predictions, literature or peptide sequencing ...

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Bioe131: Introduction to Computational Biology PowerPoint PPT Presentation

Bioe131: Introduction to Computational Biology - (Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...

(Some ribosomes are free-floating in the cytosol) ... Usually found as a 'zwitterion' RNA structure. Biological Databases. Chemical structures ' ...

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Data Acquisition Tools PowerPoint PPT Presentation

Data Acquisition Tools - DNA sequencing is performed using an automated version of ... Affinity methods. Affinity chromatography. Co-immunoprecipitation. Molecular and atomic methods ...

DNA sequencing is performed using an automated version of ... Affinity methods. Affinity chromatography. Co-immunoprecipitation. Molecular and atomic methods ...

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CalbiCyc, Metabolic Pathways at the Candida Genome Database PowerPoint PPT Presentation

CalbiCyc, Metabolic Pathways at the Candida Genome Database - Pathways are just one of the types of data we provide, and they account for a ... Found that it was easier to make progress by making a focused 'project' out of ...

Pathways are just one of the types of data we provide, and they account for a ... Found that it was easier to make progress by making a focused 'project' out of ...

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Drawing, clustering and visualization of biological pathways. PowerPoint PPT Presentation

Drawing, clustering and visualization of biological pathways. - Drawing, clustering and visualization of biological pathways. ... David Auber (Bordeaux Labri) Yves Chiricota (Chicoutimi UQAM) Thank you for your attention ...

Drawing, clustering and visualization of biological pathways. ... David Auber (Bordeaux Labri) Yves Chiricota (Chicoutimi UQAM) Thank you for your attention ...

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Basic Control Theory for Biologists PowerPoint PPT Presentation

Basic Control Theory for Biologists - 'Principles and methods used to design engineering systems ... Gas Pedal. Car. Sense. Speed. Compute. Control Action. Goals: Stability, Performance, Robustness ...

'Principles and methods used to design engineering systems ... Gas Pedal. Car. Sense. Speed. Compute. Control Action. Goals: Stability, Performance, Robustness ...

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Pathways - M.A. Ott (CMBI) Pathways & Molecules Contents Enzymes and Metabolites Metabolic Pathways: Cholesterol Biosynthesis Metabolic Disorders BioMeta Database ...

M.A. Ott (CMBI) Pathways & Molecules Contents Enzymes and Metabolites Metabolic Pathways: Cholesterol Biosynthesis Metabolic Disorders BioMeta Database ...

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The Pathway/Genome Navigator - The Pathway/Genome Navigator

The Pathway/Genome Navigator

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The Internet hourglass PowerPoint PPT Presentation

The Internet hourglass - The Internet hourglass. IP. Web. FTP. Mail. News. Video. Audio. ping. napster. Applications ... 'Positive feedback' to create switches and memory (digital systems) ...

The Internet hourglass. IP. Web. FTP. Mail. News. Video. Audio. ping. napster. Applications ... 'Positive feedback' to create switches and memory (digital systems) ...

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Biyoinformatik PowerPoint PPT Presentation

Biyoinformatik - Biyoinformatik zg r ak r Bilgisayarlar n molek ler biyolojide kullan m Molek llerin boyutlu grafik temsili Molek ler dizilimler boyutlu yap ...

Biyoinformatik zg r ak r Bilgisayarlar n molek ler biyolojide kullan m Molek llerin boyutlu grafik temsili Molek ler dizilimler boyutlu yap ...

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Fernando J. Martin-Sanchez, Ph. D. Head, Health Bioinformatics Dept. National Institute of Health PowerPoint PPT Presentation

Fernando J. Martin-Sanchez, Ph. D. Head, Health Bioinformatics Dept. National Institute of Health - Title: Sin t tulo de diapositiva Author: Fernando Mart n Last modified by: Fernando Mart n Created Date: 7/1/1999 8:58:12 PM Document presentation format

Title: Sin t tulo de diapositiva Author: Fernando Mart n Last modified by: Fernando Mart n Created Date: 7/1/1999 8:58:12 PM Document presentation format

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Writing Programs that Analyze PathwayGenome Databases PowerPoint PPT Presentation

Writing Programs that Analyze PathwayGenome Databases - Types of Credit: Created, Reviewed, Revised. Home Pages for Authors ... used for Stoichiometry Coefficients, Compartments, Citations, etc. Principal Classes 1 ...

Types of Credit: Created, Reviewed, Revised. Home Pages for Authors ... used for Stoichiometry Coefficients, Compartments, Citations, etc. Principal Classes 1 ...

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Creating the right chemistry in Pathways PowerPoint PPT Presentation

Creating the right chemistry in Pathways - Systems biology ...not in ten years. Pathways which? ... Tautomerism (variable positions of hydrogens) Other 'chemical' flexibility. Protonation state ...

Systems biology ...not in ten years. Pathways which? ... Tautomerism (variable positions of hydrogens) Other 'chemical' flexibility. Protonation state ...

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MGED Ontology: An Ontology of Biomaterial Descriptions for Microarrays PowerPoint PPT Presentation

MGED Ontology: An Ontology of Biomaterial Descriptions for Microarrays - Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Use Mouse Anatomical Dictionary Stage 28 to pick experiments according to 'organism part' ...

Cell source: in-house bred mice (contact: norma.howells@itg.fzk. ... Use Mouse Anatomical Dictionary Stage 28 to pick experiments according to 'organism part' ...

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A tool for metabolic and regulatory pathways visual analysis PowerPoint PPT Presentation

A tool for metabolic and regulatory pathways visual analysis - Biologists aim at identifying these roles, described as networks of interactions ... Develop an independent application based on batik ...

Biologists aim at identifying these roles, described as networks of interactions ... Develop an independent application based on batik ...

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Functional evolution of bacterial genome PowerPoint PPT Presentation

Functional evolution of bacterial genome - ... minimal media 190 carbon sources ... Number of genes type Strains 1 5,289,471 5,349 EHEC EDL933 109 5,516,160 4,788 EPEC E22 1 5,498,450 5,361 EHEC ...

... minimal media 190 carbon sources ... Number of genes type Strains 1 5,289,471 5,349 EHEC EDL933 109 5,516,160 4,788 EPEC E22 1 5,498,450 5,361 EHEC ...

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Organization of Biological Data PowerPoint PPT Presentation

Organization of Biological Data - 64 ways of writing the codon. 20 amino acids. The Flow of ... Physiological state. of the cell. Paradigm Shift in the Bioinformatics Age. Conventional Path ...

64 ways of writing the codon. 20 amino acids. The Flow of ... Physiological state. of the cell. Paradigm Shift in the Bioinformatics Age. Conventional Path ...

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Ontologies Working Group Agenda MGED3 PowerPoint PPT Presentation

Ontologies Working Group Agenda MGED3 - Provide bridge to ontologies from other knowledge domains. What is an Ontology? ... Knowledge representation. Link to other domains (gene sequence annotation, ...

Provide bridge to ontologies from other knowledge domains. What is an Ontology? ... Knowledge representation. Link to other domains (gene sequence annotation, ...

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The design and implementation of a system that integrates pathway data from KEGG and genome sequence data from NCBI PowerPoint PPT Presentation

The design and implementation of a system that integrates pathway data from KEGG and genome sequence data from NCBI - The ids used in two DBs are totally different. ... Use conserved domain to perform HMM search. Enable sequence alignment and pattern search ...

The ids used in two DBs are totally different. ... Use conserved domain to perform HMM search. Enable sequence alignment and pattern search ...

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Foundations of the Semantic Web: Ontology Engineering PowerPoint PPT Presentation

Foundations of the Semantic Web: Ontology Engineering - Foundations of the Semantic Web: Ontology Engineering Building Ontologies 1 Alan Rector & colleagues

Foundations of the Semantic Web: Ontology Engineering Building Ontologies 1 Alan Rector & colleagues

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BioTrac 25 Proteomics: Principles and Methods - BioTrac 25 Proteomics: Principles and Methods

BioTrac 25 Proteomics: Principles and Methods

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Complexity - Collect and import raw materials. Common currencies and building blocks. Complex assembly ... Modules exponential, mix to create power law. Why power laws in ...

Collect and import raw materials. Common currencies and building blocks. Complex assembly ... Modules exponential, mix to create power law. Why power laws in ...

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Digital Cells Nano-Bio-Info Technology PowerPoint PPT Presentation

Digital Cells Nano-Bio-Info Technology - Digital Cells Nano-Bio-Info Technology Introduction to Nanotechnology Image by John Alsop Outline Concept of a gene (extended) Gene Regulatory Networks (GRN) GRN and ...

Digital Cells Nano-Bio-Info Technology Introduction to Nanotechnology Image by John Alsop Outline Concept of a gene (extended) Gene Regulatory Networks (GRN) GRN and ...

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Ecocyc PowerPoint PPT Presentations