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Vamsi

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Vamsi Sundus Shawnalee Data collected under different conditions (i.e. treatments) whether the conditions are different from each other and [ ] how the ... – PowerPoint PPT presentation

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Title: Vamsi


1
Spatial Random Field Models Comparing C/N Ratio
among Tillage Treatments
  • Vamsi
  • Sundus
  • Shawnalee

2
Purpose
  • Data collected under different conditions (i.e.
    treatments) ? whether the conditions are
    different from each other and how the
    differences manifest themselves.
  • This data concerns soil.

3
The Setup
  • Soils are first chisel-plowed in the spring
  • Samples from 0-2 inches were collected.
  • Measured N percentage (TN)
  • Measured C percentage (CN)
  • Calculated C/N, ratio between the two treatments.
  • Looking at the sample setup on 674, we see that
    it wasnt randomly allocated.
  • We expect perhaps some spatial autocorrelation
    among the sample sites.

4
Simple calculations
  • Author calculated simple pooled t-test
  • p .809.
  • p gt a
  • Thus no relation
  • Doesnt account for spatial autocorrelation among
    the 195 chisel-plow and 200 non-till strips.
  • Doesnt convey the differences in the spatial
    structure of the treatments.

5
Analysis
  • They used SAS to obtain least squares
    restricted maximum likelihood ? common nugget
    effect was fit.
  • Considerable variability of C/N ratios due to
    nugget effect.
  • Using proc mixed we get predictions of the C/N
    ratio.

6
Analysis (cont.)
  • With proc mixed we assume that the C/N ratios are
    assumed to depend on the tillage treatments.
  • The SAS program is included in the section.
    Omitted since this is a class in R.
  • But, in the programming
  • Semivariogram ensure both have same nugget
    effect.

7
Looking at the SAS Generated Output
  • Pg 677-678 (SAS Output)
  • Looking at the curvy wavy thingy (surface plots)
  • We see one looks smoother and more predictable
    (no-tillage). This means greater spatial
    continuity (larger range). I.e. positive
    autocorrelations stronger over same distance.

8
What does this mean? I know youre lost.
  • At this point in the analysis
  • There is no difference in the average C/N values
    in the study. when sampling two months after
    installment of treatment. pooled t-test
  • There are differences in the spatial structure of
    the treatments 3D plot.
  • If we do a SSR (sum of squares reduction) we see
    that its extremely significant that a single
    spherical semivariogram cannot be used for bother
    semivariograms (Ha).
  • Using ordinary least squares we also find
    significance, but less so.
  • .0001 versus .00009
  • .-3-1 versus .-4-9.

9
  • Next section

10
Spatial Regression of Soil Carbon on Soil N
  • What if only one variable was important (i.e.
    either C or N) but not the combination of the two
    (i.e. C/N or N/C ratio)?
  • Here Consider predicting soil carbon as a
    function of soil nitrogen.
  • From the scatterplot (TC v TN) we see an
    extremely strong correlation of sorts. pg. 679

11
Good model
  • If we wanted to have a more accurate model
    though, wed have to include spatiality instead
    of linear model
  • TC(si) ß0 ß1TN(si) e(si)
  • Errors are spatially correlated.
  • We need to model it though

12
e(si)
  • Need to model the semivariogram. Two steps
  • Model fit by normal least squares and the
    empirical semivariogram of the OLS residuals is
    computed to suggest a theoretical semivariogram
    model.
  • We need the theoretical model to get initial
    semivariogram parameters.
  • Need mean and autocorrelation structure ?
    restricted maximum likelihood.
  • Here we use proc mixed to estimate both the mean
    function and the autocorrelation structure (and
    predictions at unobserved locations).

13
Output Analysis
  • (1-Residual sum of squares)/corrected total sum
    of squares .92 estimate of R2
  • Doing the proc mixed procedure, we generate a lot
    of output 9.17 (pg 682 683)
  • From the output generated we look at the
    solutions for fixed effects for estimates of
    the parameters were interested in. Specifically,
    ß0 intercept and ß1 TN.

14
What does this mean?
  • For every additional percent of N, we increase C
    by 11.11 percentage points.
  • After playing a short game of find the
    difference on 9.50, I see that they are nearly
    the same patterns. Wowestimates of the expected
    value of TC and Predictions of TC are almost the
    same. Amazing! pg 684
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