316 Rcsb PPTs View free & download

Evaluation of Structure Quality Using RCSB PDB Tools PowerPoint PPT Presentation

Evaluation of Structure Quality Using RCSB PDB Tools - Follow the RCSB PDB Validation Server tutorial for a particular structure (with a partner) ... National Institute of Biomedical Imaging and Bioengineering (NIBIB) ...

Follow the RCSB PDB Validation Server tutorial for a particular structure (with a partner) ... National Institute of Biomedical Imaging and Bioengineering (NIBIB) ...

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Worldwide Protein Data Bank PowerPoint PPT Presentation

Worldwide Protein Data Bank - Worldwide Protein Data Bank www.wwpdb.org Formalization of current working practice Members RCSB (Research Collaboratory for Structural Bioinformatics) PDBj (Osaka ...

Worldwide Protein Data Bank www.wwpdb.org Formalization of current working practice Members RCSB (Research Collaboratory for Structural Bioinformatics) PDBj (Osaka ...

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Bioinformatics PowerPoint PPT Presentation

Bioinformatics - www.stats.ox.ac.uk/hein/lectures, http://www.stats.ox.ac.uk/mathgen/bioinformatics/index.html ... http://www.rcsb.org/pdb/holdings.html. Known protein structures. ...

www.stats.ox.ac.uk/hein/lectures, http://www.stats.ox.ac.uk/mathgen/bioinformatics/index.html ... http://www.rcsb.org/pdb/holdings.html. Known protein structures. ...

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CISC 467667 Intro to Bioinformatics Fall 2005 Protein Structure Prediction PowerPoint PPT Presentation

CISC 467667 Intro to Bioinformatics Fall 2005 Protein Structure Prediction - Little or no improvement using multiple hidden layers. Surpassing 70% by ... SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/ FSSP: PDB: http://www.rcsb.org/pdb ...

Little or no improvement using multiple hidden layers. Surpassing 70% by ... SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/ FSSP: PDB: http://www.rcsb.org/pdb ...

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Advanced Tools for Protein PowerPoint PPT Presentation

Advanced Tools for Protein - ... artists were employed for hand-drawing understandable picture of a protein ... PDB tutorial: http://www.rcsb.org/pdbstatic/tutorials/tutorial.html ...

... artists were employed for hand-drawing understandable picture of a protein ... PDB tutorial: http://www.rcsb.org/pdbstatic/tutorials/tutorial.html ...

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Presentacin de PowerPoint PowerPoint PPT Presentation

Presentacin de PowerPoint - An EU-US Course in Environmental Biotechnology. H. influenza. http://www.rcsb.org/pdb ... Identities = 183/305 (60%), Positives = 233/305 (76%), Gaps = 1/305 (0 ...

An EU-US Course in Environmental Biotechnology. H. influenza. http://www.rcsb.org/pdb ... Identities = 183/305 (60%), Positives = 233/305 (76%), Gaps = 1/305 (0 ...

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Database searching PowerPoint PPT Presentation

Database searching - If the protein of interest has a relative whose structure ... http://www.rcsb.org/pdb/home/home.do. http://scop.mrc-lmb.cam.ac.uk/scop ...

If the protein of interest has a relative whose structure ... http://www.rcsb.org/pdb/home/home.do. http://scop.mrc-lmb.cam.ac.uk/scop ...

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Downloading%20Datasets PowerPoint PPT Presentation

Downloading%20Datasets - Downloading Datasets. Fetching datasets from the Internet. Let's Get Data. http://www.emboss.org ... gzip -d pdb1m7t.ent.Z pdb1lqt.ent.Z ...

Downloading Datasets. Fetching datasets from the Internet. Let's Get Data. http://www.emboss.org ... gzip -d pdb1m7t.ent.Z pdb1lqt.ent.Z ...

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www.wwpdb.org PowerPoint PPT Presentation

www.wwpdb.org - ... of these molecules Solutions Analysis and classification Identify antibiotics and inhibitors and group them ... the bacterial transcription ...

... of these molecules Solutions Analysis and classification Identify antibiotics and inhibitors and group them ... the bacterial transcription ...

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Worldwide Protein Data Bank - ... and quality assessment information. Additional information should be available, including: ... however Journals need to check validity of IDCODE ...

... and quality assessment information. Additional information should be available, including: ... however Journals need to check validity of IDCODE ...

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Displaying Biomolecule Using Rasmol PowerPoint PPT Presentation

Displaying Biomolecule Using Rasmol - Displaying Biomolecule Using Rasmol. Protein Structure and Function ... To change color of display color blue. To change the background color background white ...

Displaying Biomolecule Using Rasmol. Protein Structure and Function ... To change color of display color blue. To change the background color background white ...

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? ? ? ? ? Bioinformatics - Bioinformatics Bioscau@21cn.com yahoo.com.cn ...

Bioinformatics Bioscau@21cn.com yahoo.com.cn ...

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Bioorganic Chemistry - Bioorganic Chemistry

Bioorganic Chemistry

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Achondroplasia: Dwarfism PowerPoint PPT Presentation

Achondroplasia: Dwarfism - Achondroplasia: Dwarfism. Kelly LaBarre. Clinical Features. Achondroplasia ... Presents clinically as a long narrow trunk with short extremities, large head ...

Achondroplasia: Dwarfism. Kelly LaBarre. Clinical Features. Achondroplasia ... Presents clinically as a long narrow trunk with short extremities, large head ...

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Worldwide Protein Data Bank - ... Roland L. Dunbrack, Jr., Krzysztof Fidelis, Joachim Frank, Adam Godzik, Kim ... Andrzej Joachimiak, Bernard Heymann, David Jones, John L. Markley, John Moult, ...

... Roland L. Dunbrack, Jr., Krzysztof Fidelis, Joachim Frank, Adam Godzik, Kim ... Andrzej Joachimiak, Bernard Heymann, David Jones, John L. Markley, John Moult, ...

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Lab6 - Title: PowerPoint Presentation Last modified by: bio74 Document presentation format: Company: Georgia State University Other titles

Title: PowerPoint Presentation Last modified by: bio74 Document presentation format: Company: Georgia State University Other titles

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Mapping of nucleophilic centers using irreversible inhibitors PowerPoint PPT Presentation

Mapping of nucleophilic centers using irreversible inhibitors - A disease caused by a deficiency of vitamin B1 (thiamine) ... practice 'rice polishing' removing the thiamine rich course outer layers from the rice ...

A disease caused by a deficiency of vitamin B1 (thiamine) ... practice 'rice polishing' removing the thiamine rich course outer layers from the rice ...

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Retrieving and Viewing Protein Structures from the Protein Data Base PowerPoint PPT Presentation

Retrieving and Viewing Protein Structures from the Protein Data Base - Retrieving and Viewing Protein Structures from the Protein Data Base 7.88J Protein Folding Prof. David Gossard Room 3-336, x3-4465 gossard@mit.edu

Retrieving and Viewing Protein Structures from the Protein Data Base 7.88J Protein Folding Prof. David Gossard Room 3-336, x3-4465 gossard@mit.edu

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Controlling Cancer PowerPoint PPT Presentation

Controlling Cancer - X-ray crystallography and ... X_ray_diffraction.png#file Steps in Determining a Protein s Structure Using X-Ray Crystallography Relate to EGFR and the drugs.. X Ray ...

X-ray crystallography and ... X_ray_diffraction.png#file Steps in Determining a Protein s Structure Using X-Ray Crystallography Relate to EGFR and the drugs.. X Ray ...

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Protein CrossLinking and Computational Techniques for the Identification of Protein Complexes PowerPoint PPT Presentation

Protein CrossLinking and Computational Techniques for the Identification of Protein Complexes - Protein Cross-Linking and Computational Techniques for the ... Wendy Williams. Linda Holmes. Cheryl Terry. Kathy Ketner. Department of Energy. ORNL Seed Money ...

Protein Cross-Linking and Computational Techniques for the ... Wendy Williams. Linda Holmes. Cheryl Terry. Kathy Ketner. Department of Energy. ORNL Seed Money ...

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Molecular Structure and Function PowerPoint PPT Presentation

Molecular Structure and Function - ... Structure and Function. Death's cap mushroom- alpha amanitin-binds the back, freezing it ... Messenger RNA (mRNA)- carries information to be translated ...

... Structure and Function. Death's cap mushroom- alpha amanitin-binds the back, freezing it ... Messenger RNA (mRNA)- carries information to be translated ...

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Lysozyme - Lysozyme http://en.wikipedia.org/wiki/Lysozyme A.k.a : Muramidase OR N-acetylmuramide glycanhydrolase An enzyme found naturally in egg white human tears ...

Lysozyme http://en.wikipedia.org/wiki/Lysozyme A.k.a : Muramidase OR N-acetylmuramide glycanhydrolase An enzyme found naturally in egg white human tears ...

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Lecture 9: Structure Viewing, PowerPoint PPT Presentation

Lecture 9: Structure Viewing, - NCBI: MMDB (Molecular Modeling DataBase), Cn3D. ... Structure Alignment. Link for results. Quick PDB. Saposin fold. Surfactant. taken from PDB ...

NCBI: MMDB (Molecular Modeling DataBase), Cn3D. ... Structure Alignment. Link for results. Quick PDB. Saposin fold. Surfactant. taken from PDB ...

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The Future As Defined by Structural Genomics PowerPoint PPT Presentation

The Future As Defined by Structural Genomics - Dept. of Pharmacology. University of California San Diego. pbourne@ucsd.edu ... Structural genomics is the process of high-throughput determination of the 3 ...

Dept. of Pharmacology. University of California San Diego. pbourne@ucsd.edu ... Structural genomics is the process of high-throughput determination of the 3 ...

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High Performance Application Program Interfaces to Macromolecular Structure Data PowerPoint PPT Presentation

High Performance Application Program Interfaces to Macromolecular Structure Data - ADIT. Annotate. Validate. Depositor Approval. Validation Report ... ADIT. ADITsrv. Features of System. Different dictionaries without software changes ...

ADIT. Annotate. Validate. Depositor Approval. Validation Report ... ADIT. ADITsrv. Features of System. Different dictionaries without software changes ...

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Introduction to Bio-Informatics PowerPoint PPT Presentation

Introduction to Bio-Informatics - Lately: the computer applications in biological sciences. Protein. Http://www. ... http://www.ncbi.nlm.nih.gov/About/primer/index.html. Human genome project tour ...

Lately: the computer applications in biological sciences. Protein. Http://www. ... http://www.ncbi.nlm.nih.gov/About/primer/index.html. Human genome project tour ...

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Ferritin - Found in ovalbumin in egg whites for development of bird embryo, ... Not a simple ferric oxide hydration and reduction of Fe3 Fe2 Two current hypotheses: ...

Found in ovalbumin in egg whites for development of bird embryo, ... Not a simple ferric oxide hydration and reduction of Fe3 Fe2 Two current hypotheses: ...

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Bioinformatics Study of Biology in post-genomic era PowerPoint PPT Presentation

Bioinformatics Study of Biology in post-genomic era - Development of Bioinformatics and its application on Biotechnology By Wong Tak Hong

Development of Bioinformatics and its application on Biotechnology By Wong Tak Hong

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Cystic Fibrosis and the Lungs PowerPoint PPT Presentation

Cystic Fibrosis and the Lungs - Cystic Fibrosis. One of the most common autosomal-recessive diseases. ... Cystic Fibrosis Lung Information: http://www.ygyh.org/cf/cause.htm. Lung Pictures ...

Cystic Fibrosis. One of the most common autosomal-recessive diseases. ... Cystic Fibrosis Lung Information: http://www.ygyh.org/cf/cause.htm. Lung Pictures ...

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PDB database http://www.pdb.org/ PowerPoint PPT Presentation

PDB database http://www.pdb.org/ - Title: PDB database http://www.pdb.org/ Author: avarsani Last modified by: dwilliamson Created Date: 6/4/2004 2:42:04 PM Document presentation format

Title: PDB database http://www.pdb.org/ Author: avarsani Last modified by: dwilliamson Created Date: 6/4/2004 2:42:04 PM Document presentation format

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Protein%20Folding PowerPoint PPT Presentation

Protein%20Folding - Nobel Prize in Chemistry. Photosynthetic Reaction Center, Johann Deisenhofer, 1988, ... the protein folding problem remains a grand challenge of modern science. ...

Nobel Prize in Chemistry. Photosynthetic Reaction Center, Johann Deisenhofer, 1988, ... the protein folding problem remains a grand challenge of modern science. ...

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Introduction to PDB Workshop From Molecules to Medicine: Integrating Crystallography in Drug Discove PowerPoint PPT Presentation

Introduction to PDB Workshop From Molecules to Medicine: Integrating Crystallography in Drug Discove - To provide a global resource for the advancement of ... SCOP/CATH. BioCyc. Pfam. Reactome. Enzyme Classification. PubMed. GeneRIF. IHOP. Abstract search ...

To provide a global resource for the advancement of ... SCOP/CATH. BioCyc. Pfam. Reactome. Enzyme Classification. PubMed. GeneRIF. IHOP. Abstract search ...

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NPACI ppt template PowerPoint PPT Presentation

NPACI ppt template - NPACI: National Partnership for Advanced Computational Infrastructure. Bacteriophage phiX174 ... Now - Published URL - return single or multiple structures ...

NPACI: National Partnership for Advanced Computational Infrastructure. Bacteriophage phiX174 ... Now - Published URL - return single or multiple structures ...

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Protein Structure: Xray Crystallography PowerPoint PPT Presentation

Protein Structure: Xray Crystallography - To review the basics of protein structure (primary, secondary, supersecondary, tertiary) Understand the basic principles and steps in protein crystallization and ...

To review the basics of protein structure (primary, secondary, supersecondary, tertiary) Understand the basic principles and steps in protein crystallization and ...

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http:users.rcn.comjkimball.ma.ultranetBiologyPagesSSecondaryStructure.html PowerPoint PPT Presentation

http:users.rcn.comjkimball.ma.ultranetBiologyPagesSSecondaryStructure.html - http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/S/SecondaryStructure .html ... http://www.-biol.paisley.ac.uk/courses/stfunmac/glossary/tertiary.html ...

http://users.rcn.com/jkimball.ma.ultranet/BiologyPages/S/SecondaryStructure .html ... http://www.-biol.paisley.ac.uk/courses/stfunmac/glossary/tertiary.html ...

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Real World Experiences in Operating a Collaboratory: The Protein Data Bank PowerPoint PPT Presentation

Real World Experiences in Operating a Collaboratory: The Protein Data Bank - Board of Governors Professor of Chemistry & Chemical Biology ... Team building exercises. Management training. Technical discussions ...

Board of Governors Professor of Chemistry & Chemical Biology ... Team building exercises. Management training. Technical discussions ...

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Assignment 2: Introduction to the Insight II Modeling Package and the PDB File Structure and Retriev PowerPoint PPT Presentation

Assignment 2: Introduction to the Insight II Modeling Package and the PDB File Structure and Retriev - Protein/Nu-cleic Acid Complexes. Proteins, Peptides, Viruses. Molecular Type --Feb 5, 2002 ... Assignment 3: Construction and Analysis of the Pentapeptide Met ...

Protein/Nu-cleic Acid Complexes. Proteins, Peptides, Viruses. Molecular Type --Feb 5, 2002 ... Assignment 3: Construction and Analysis of the Pentapeptide Met ...

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Protein Folding PowerPoint PPT Presentation

Protein Folding - Biomolecule composed of one or more polypeptide chains containing amino acid ... http://www.cs.ucl.ac.uk/staff/D.Jones/t42morph.html. Haemoglobin. My Research ...

Biomolecule composed of one or more polypeptide chains containing amino acid ... http://www.cs.ucl.ac.uk/staff/D.Jones/t42morph.html. Haemoglobin. My Research ...

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PDB: Protein Data Bank PowerPoint PPT Presentation

PDB: Protein Data Bank - SHEET records are used to identify the position of sheets in the molecule. TRUN ... Alignment Of Multiple Protein Structures Using Monte Carlo Optimization, Guda C, ...

SHEET records are used to identify the position of sheets in the molecule. TRUN ... Alignment Of Multiple Protein Structures Using Monte Carlo Optimization, Guda C, ...

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Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets and Homo PowerPoint PPT Presentation

Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets and Homo - Disclaimer I am not associated with any structural genomics project ... of Biomedical Imaging and Bioengineering (NIBIB), and the National Institute ...

Disclaimer I am not associated with any structural genomics project ... of Biomedical Imaging and Bioengineering (NIBIB), and the National Institute ...

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Protein Evolution and PowerPoint PPT Presentation

Protein Evolution and - Protein Evolution and Sequence Analysis Significant sequence similarity allows one to assign function to an unknown protein(s) based on properties of known proteins ...

Protein Evolution and Sequence Analysis Significant sequence similarity allows one to assign function to an unknown protein(s) based on properties of known proteins ...

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QM/MM%20Study%20of%20Cytochrome%20P450%20BM3%20Catalysis%20Mechanism%20and%20Application%20in%20Drug%20Design PowerPoint PPT Presentation

QM/MM%20Study%20of%20Cytochrome%20P450%20BM3%20Catalysis%20Mechanism%20and%20Application%20in%20Drug%20Design - QM/MM Study of Cytochrome P450 BM3 Catalysis Mechanism and Application in Drug Design ... One-half of potential drugs fail because of ADME/Tox issues ...

QM/MM Study of Cytochrome P450 BM3 Catalysis Mechanism and Application in Drug Design ... One-half of potential drugs fail because of ADME/Tox issues ...

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RNA2:%20Last%20week's%20take%20home%20lessons PowerPoint PPT Presentation

RNA2:%20Last%20week's%20take%20home%20lessons - RNA2: Last week's take home lessons Clustering by gene and/or condition Distance and similarity measures Clustering & classification Applications

RNA2: Last week's take home lessons Clustering by gene and/or condition Distance and similarity measures Clustering & classification Applications

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www.wwpdb.org - Title: PowerPoint Presentation Last modified by: Christine Zardecki Document presentation format: On-screen Show Company: Helen Berman Other titles

Title: PowerPoint Presentation Last modified by: Christine Zardecki Document presentation format: On-screen Show Company: Helen Berman Other titles

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Membrane Proteins PowerPoint PPT Presentation

Membrane Proteins - Practicality of membrane protein simulations Dr Phil Biggin Dept. of Biochemistry University of Oxford phil@biop.ox.ac.uk Membrane Proteins Why?

Practicality of membrane protein simulations Dr Phil Biggin Dept. of Biochemistry University of Oxford phil@biop.ox.ac.uk Membrane Proteins Why?

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www'wwpdb'org - ... average structure, if provided, should have the same sequence and covalent ... only if they meet the above criteria for alignment and covalent structure ...

... average structure, if provided, should have the same sequence and covalent ... only if they meet the above criteria for alignment and covalent structure ...

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Bioinformatics - Bioinformatics CSC 391/691; PHY 392; BICM 715 Importance of bioinformatics A more global perspective in experimental design The ability to capitalize on the emerging ...

Bioinformatics CSC 391/691; PHY 392; BICM 715 Importance of bioinformatics A more global perspective in experimental design The ability to capitalize on the emerging ...

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BCB 444/544 - Each of 20 different amino acids has different 'R-Group' or side chain attached to Ca ... Explicit chemical graph information (covalent bonds) ...

Each of 20 different amino acids has different 'R-Group' or side chain attached to Ca ... Explicit chemical graph information (covalent bonds) ...

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Lipase - Reduces number of fat stored in the body. Produced in the pancreas, then released to the small intestines. ... 'Bacillus subtilis lipase A.' RSCB Protein Data Bank. ...

Reduces number of fat stored in the body. Produced in the pancreas, then released to the small intestines. ... 'Bacillus subtilis lipase A.' RSCB Protein Data Bank. ...

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www.wwpdb.org - ... establish a charitable organization to serve as a conduit for receipt of both ... UK Department of Computer Sciences/Condor Project ...

... establish a charitable organization to serve as a conduit for receipt of both ... UK Department of Computer Sciences/Condor Project ...

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Alexei Adzhubei PowerPoint PPT Presentation

Alexei Adzhubei - Topic 4. Alexei Adzhubei. Current public, searchable databases with protein models ... models from PDB, compatible with PDB, built using the MDB dictionary (mmCIF and ...

Topic 4. Alexei Adzhubei. Current public, searchable databases with protein models ... models from PDB, compatible with PDB, built using the MDB dictionary (mmCIF and ...

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Protein dynamics PowerPoint PPT Presentation

Protein dynamics - Thermodynamic equilibrium native state has lowest free energy. Reference ... Rosetta (Baker's lab) Touchstone (Skolnick) 14. Need for Low Resolution Approaches ...

Thermodynamic equilibrium native state has lowest free energy. Reference ... Rosetta (Baker's lab) Touchstone (Skolnick) 14. Need for Low Resolution Approaches ...

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Hemophilia A PowerPoint PPT Presentation

Hemophilia A - Hemophilia A Constructed by Sarah Akiki Overview of the disease Hemophilia A is an X-linked, recessive, bleeding disorder caused by a deficiency in the activity of ...

Hemophilia A Constructed by Sarah Akiki Overview of the disease Hemophilia A is an X-linked, recessive, bleeding disorder caused by a deficiency in the activity of ...

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Rosetta - Winner of CASP (Critical Assessment of Structure Prediction) competition at ... g. Lennard-Jones attractive score is Eatr in the Rosetta commons output file and ...

Winner of CASP (Critical Assessment of Structure Prediction) competition at ... g. Lennard-Jones attractive score is Eatr in the Rosetta commons output file and ...

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Tools in bioinformatics PowerPoint PPT Presentation

Tools in bioinformatics - To provide students with practical knowledge of bioinformatics tools and their ... Mathematically, we use the hypergeometric distribution to compute the ...

To provide students with practical knowledge of bioinformatics tools and their ... Mathematically, we use the hypergeometric distribution to compute the ...

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Structure Prediction and Modeling of a Eukaryotic Member of the Major Facilitator Superfamily PowerPoint PPT Presentation

Structure Prediction and Modeling of a Eukaryotic Member of the Major Facilitator Superfamily - Only template and target extracted. Around 30 % similarity between template and target ... Using extracted template and target alignment. Sequence for template ...

Only template and target extracted. Around 30 % similarity between template and target ... Using extracted template and target alignment. Sequence for template ...

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Rcsb PowerPoint PPT Presentations