Ongoing work

1
Ongoing work

• Annotation tool for the cell cycle
• Development of approaches for cell cycle
  nomenclature
• Organism specific cell cycle filters
• Shortest path analysis
• Cooccurrence cell cycle indexing
• NLP based cell cycle indexing

2
Java-applet based tool for annotators

• Need to define minimal and optimal requirements
• Input and output parameters
• Back end
• GUI

3
(No Transcript)
4
Arabidopsis cell cycle with GO component
5
Arabidopsis DNA replication checkpoint (GO) with
chemicals
6
Arabidopsis cell cycle GO with GO process
annotation
7
Timeline

• Organism specific filtersPresent
• Shortest path analysis Present
• Combined organism view Present
• Annotation tool Interface prototype October
  2005, depending on specification input
• Development of approaches for cell cycle
  nomenclature (following agreement)End of 2005,
  depending on specification input
• GO based?
• Manually curated dictionary?
• Cell cycle gene iterations?
• Cell cycle indexing TBD
• Input all papers with occurrences, excluding the
  rest?
• Input all, with filters on occurrences?
• NLP based cell cycle indexingTBD
• Interaction and directionality indexingTBD
• Full text Have in house a full text corpus from
  Plan Physiol

8
(No Transcript)