Title: DNA: The Molecule of Life
1DNA The Molecule of Life
2DNA and RNA
- Genes are segments of DNA on a chromosome that
code for specific traits - DNA nucleic acid called deoxyribonucleic acid
that contains the instructions necessary for a
cell to build proteins from amino acids. - RNA ribonucleic acid plays a role in gene
expression and protein synthesis -
3Isolating the Material of Heredity
- 1869 Friedrich Miescher isolated a weakly acidic
phosphorus-containing substance from the nuclei
of white blood cells - Called it nucleic acid
- Early 1900s Pheobus Levene isolated two types
of nucleic acid - Called them ribose nucleic acid (RNA) and
deoxyribose nucleic acid (DNA) - Soon after, Thomas Hunt Morgan provided the first
experimental evidence that genes are located on
chromosomes - Working with fruit flies
4Isolating the Material of Heredity
- In 1928 Fredrick Griffith designed an experiment
to study the bacteria that were responsible for a
pneumonia epidemic in London - He discovered that the dead pathogenic bacteria
passed on their disease-causing properties to
live, non-pathogenic bacteria - He called this the transforming principle
- Griffith died during world war II but several
scientists built on his work
5http//www.juliantrubin.com/bigten/dnaexperiments.
html
6Isolating the Material of Heredity
- In 1944, Oswald Avery, Colin MacLeod, and Maclyn
McCarty discovered - When they treated heat-killed pathogenic bacteria
with a protein-destroying enzyme, transformation
still occurred - When they treated heat-killed pathogenic bacteria
with a DNA-destroying enzyme, transformation did
not occur - The results provided evidence that DNA has a role
in transformation
7http//courses.cm.utexas.edu/emarcotte/ch339k/fall
2005/Lecture-Ch8-1.html
8Isolating the Material of Heredity
- In 1952, Alfred Hershey and Martha Chase used
radioactive labeling to show that genes are made
of DNA - They used a virus that contains a protein coat
surrounding a length of DNA - This virus attaches to a bacteria cell and
injects genetic information into the cell - The infected cell produces new viruses and bursts
which releases the new viruses to infect other
cells
9Isolating the Material of Heredity
- Hershey and Chase created two batches of the
virus - In one they labeled the protein coat with
radioactive sulfur - In the other, they labeled the DNA with
radioactive phosphorus - They found that the radioactive phosphorus was
found in the bacterial cells - They concluded that DNA must direct the cell to
produce new viruses - animation
10http//www.accessexcellence.org/RC/VL/GG/hershey.h
tml
11Structure of DNA
- After isolating DNA and RNA, Levene determined
that both molecules are made up of nucleotides
(in long chains) - Nucleotide is composed of
- 5-carbon sugar (deoxyribose in DNA, ribose in
RNA) - Phosphate
- Nitrogen base (4 different types)
- The 4 nitrogen bases belong to two chemical
groups called purines and prymidines - Purines Adenine (A) and Guanine (G)
- Prymidines Thymine (T) and Cytosine (C)
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13Structure of DNA
- In the late 1940s Erwin Chargaff found that
nucleotides are not present in equal amounts in
DNA and RNA - Nucleotides are present in varying proportions
- He found that the number of adenine in DNA is
equal to the number of thymine in a sample - The amount of cytosine is approximately equal to
the amount of guanine - This constant relationship is called Chargaffs
rule - Video on Chargaffs rule
14Structure of DNA
- In the early 1950s, a British scientist
Rosaslind Franklin used x-ray photography to
analyze the structure of DNA - DNA has a helical structure with two regularly
repeating patterns - Nitrogenous bases are located on the inside of
the structure, and the sugar-phosphate backbone
is located on the outside (near the watery
nucleus) - Many argue that Franklin should have shared in
the Nobel Prize for discovering the structure of
DNA, but she died before it was handed out - NOVA program on photo 51.
15Structure of DNA
- In 1953, James Watson and Francis Crick were the
first to produce a structural model for DNA - Watson and Cricks model of DNA closely resembles
a twisted ladder - Deoxyribose sugar and phosphate molecules make up
backbone (handrails of the ladder) - Paired nitrogen bases held together by weak
hydrogen bonds make up the rungs (steps) of the
ladder - The ladder twists to form a double helix
- From Franklins images, Watson and Crick knew the
distance between the sugar-phosphate handrails
remained constant
16Structure of DNA
- The two strands that make up DNA are not
identical, they are complementary to eachother - This is due to the complementary base pairs of
A-T and C-G - The two strands are also antiparallel
- The phosphate bridges run in opposite directions
in the two strands - Each end of a double stranded DNA molecule
contains the 5 end of one strand and the 3 end
of the complementary strand
17http//www.synapses.co.uk/genetics/tsg19.html
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19- In a segment of DNA, the number of purines equals
the number of pyrimidines this is because of the
base pairing rule - RULE nitrogen bases always pair in complementary
pairs - Adenine Thymine
- Guanine Cytosine
20- Ex) if 15 of the bases were thymine, what
percentage would be - a) adenine
- b) guanine
- c) cytosine
21Example
- Determine the complementary strand of DNA
- A T G C A G C
- I I I I I I I
22Ribonucleic Acid (RNA) compared to DNA
- The sugar component of RNA is ribose
- RNA does not have the nucleotide thymine (T), in
its place is uracil (U) - RNA remains single stranded
- There are several types of RNA
- mRNA, rRNA, tRNA
- DNA, RNA animation
23DNA Replication (Synthesis)
- Replication DNA has the ability to replicate
(or duplicate) itself. - This is why one cell is able to divide into two
cells and each cell has identical genetic
information - Replication takes place during S phase of
interphase
24DNA Replication (Synthesis)
- Replication is semi-conservative
- Each new molecule of DNA contains one strand of
the original complementary DNA and one new parent
strand - Each new strand conserves half of the original
molecule - Meselson-Stahl Experiment
- Replication takes place at several locations
along the DNA molecule simultaneously - The steps are described in sequence to better
understand the concept - BioFlix Replication
25- Replication starts at a specific nucleotide
sequence called the replication origin - During replication, weak hydrogen bonds that hold
complementary nitrogen bases together are broken
(This causes the two edges to unzip) with a
special group of enzymes called helicases (gyrase
breaks the hydrogen bonds) - This creates two y-shaped areas (replication
forks) at the end of the unwound area, the
unwound area is called a replication bubble - The parent (original) strands are conserved while
two new strands created from nucleotides are
formed with them (they act as a template)
26- Free floating nucleotides (from diet) are
attached to the exposed nitrogen bases according
to the base pair rule with an enzyme called DNA
polymerase - This process is called elongation
- DNA polymerase attaches new nucleotides to the
free 3 end of a preexisting chain of nucleotides - Elongation can only take place in a 5 to 3
direction - This means that replication occurs in opposite
directions along each strand of the parent DNA - One strand is replicated continuously, it is
called the leading strand - The other strand is replicated in short segments,
it is called the lagging strand - The short segments are called Okazaki fragments
- These fragments are spliced together by an enzyme
called DNA ligase
27- Since DNA polymerase cannot synthesize new
fragments of DNA, and RNA primer serves as a
starting point for the elongation of each new DNA
strand - An enzyme called primase is required to construct
a primer - When finished the strand, DNA polymerase removes
the primer by eliminating the nucleotides in a 5
to 3 direction - Hydrogen bonds form between the nitrogen bases
- Special proofreading enzymes (DNA polymerase)
check the new strand of DNA for mistakes. Errors
are removed by cutting the mistake out and using
an endonuclease and replacing it with the correct
nitrogen base
28- As soon as the newly formed strands are complete,
they rewind automatically into the helix
structure - Replication continues until the new strands are
complete and the two DNA molecules separate from
eachother - This is called termination
- This replication produces two strands of DNA from
one where each strand is composed of half-old
and half-new
http//www.bio.davidson.edu/Courses/Molbio/MolStud
ents/spring2005/Durnbaugh/yfp.html
Replication Fork Adding Nucleotides Replication
Animation Replication Review
29http//www.biosci.ohio-state.edu/mgonzalez/Micro5
21/04.html
http//distancelearning.ksi.edu/demo/bio378/lectur
e.htm
30Genetic Engineering and Recombinant DNA
- Human Genome Project - animation
- Genetic Engineering refers to the alteration of
an organisms genome (complete set of genes) by
selectively removing, adding, or modifying DNA - Recombinant DNA the process of cutting out DNA
from one genome and placing the DNA into another
genome resulting in a transgenic organism
31- Examples of transgenic organisms
- Genetically modified bacteria for use in medicine
and bioremediation (environmental clean-up) - Transgenic plants to improve crop yield and
resistance to environmental effects - Cloned animals (livestock) and organs for human
use
32Recombinant DNA How do they do it?
- Use restriction enzymes (endonucleases) to cut
strands of DNA within their interior (at specific
sequences) - animation
- Then ligase (enzyme that fuses segments of DNA)
is used as a biological glue
33Production of human insulin
- Gene in the human genome that codes for insulin
is cut out using restriction enzymes - The plasmid of an E-coli bacteria is cut using
restriction enzymes so that the gene for insulin
can be inserted using a ligase - Bacteria can read the DNA and produce insulin for
us to later harvest and use
34- Another example is the insertion of the gene that
codes for growth hormone into animals so that
they grow faster - Note Biotechnology refers to the use of
organisms or biological products for commercial
and/or industrial processes - - video
35- What are the Issues?
- Costs/where money is spent
- Motivation for the product
- Biological characteristics of the product
- Heath effects
- Environmental effects
- Freedom of Information/Privacy
- Who Owns the technology/patents
- Issues Animation
36Gel Electrophoresis
- Technique used to separate DNA fragments by size
for the purpose of identification in paternal or
criminal suits (animation) - Sample of DNA is cut using restriction enzymes
from hair, blood, skin, etc. This produces a
number of DNA segments of different lengths. - The different pieces of DNA (referred to as
restriction-fragment-length-polymorphisms or
RFLP) are tagged with a radioactive isotope
37- 3) Using an agarose gel that contains holes or
wells along one side, the samples of DNA are
inserted into the wells. A known sample is
loaded with it as a comparison
38- 4) Electric current is run through the gel,
causing the movement of the negatively charged
DNA fragments. The shortest strands move the
farthest (lowest weight) and the longer strands
(heavier) will not move as far.
39- 5) This causes separation of the DNA into bands.
The gel is left to set - 6) When combined with staining or X-ray film, the
patterns are used to determine the presence or
absence of particular DNA or proteins
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41DNA Fingerprinting
- Developed in 1985 used to identify whether or
not a sample of DNA comes from a specific person - People have similar DNA, however every human
(with the exception of identical twins, triplets,
etc.) have some unique noncoding segments of DNA
called introns exons are segments of DNA that
actually code for proteins
42- Sample of DNA is placed through gel
electrophoresis as well as samples from
individuals who are suspected as owners of the
sample - Because of introns, each individual will have a
different number of sites where the restriction
enzyme will cut - This results in a unique number and length of
fragments which produces a unique banding pattern
(fingerprint) when x-rayed - Fingerprints are used to identify criminals,
paternity or kinship - Animation
43- Lane A DNA from crime scene cut with Enzyme 1
- Lane B DNA from crime scene cut with Enzyme 2
- Lane C DNA from Suspect 1 cut with Enzyme 1
- Lane D DNA from Suspect 1 cut with Enzyme 2
- Lane E DNA from Suspect 2 cut with Enzyme 1
- Lane F DNA from Suspect 2 cut with Enzyme 2
44Protein Synthesis
- Genetic code is determined by the arrangement of
nitrogen bases within the strands of DNA - Each gene codes for the production of a specific
protein - DNA RNA protein
translation
transcription
45Proteins
- Proteins are composed of 20 different amino acids
that are strung together in endless combinations - Compose cell membranes, cell organelles, muscle
filaments, hair, hair color, enzymes (regulate
speed of chemical reactions in cells), antibodies
(disease-control agents), hormones
46Genetic Code
- It takes the code of 3 nucleotides (a codon) to
code for one amino acid - Humans can make 12 of the 20 amino acids, we must
consume the other 8 essential amino acids - Simple protein 8 amino acids
- Complex protein 50 000 amino acids
- Sequencing amino acids is determined by DNA
- Replacement of a single amino acid can change a
protein
47Genetic Code
- The genetic code has three important
characteristics - The genetic code is redundant (more than one
codon can code for the same amino acid) - The genetic code is continuous (reads as a series
of three letter codons without spaces,
punctuation or overlap) - The genetic code is nearly universal (almost all
organisms use the same code this is good for
genetic engineering and biotechnology)
48Role of DNA in protein synthesis
- DNA is in nucleus, but protein synthesis occurs
on the ribosomes in the cytoplasm - Carrier molecule (mRNA messenger RNA) is
responsible for reading the information from the
DNA (transcription) and carry it to the ribosomal
RNA (rRNA) in the cytoplasm where it will be
translated into an amino acid sequence by
transfer RNA (tRNA)
49RNA (Ribonucleic Acid)
- Different from DNA in that
- Its single stranded
- It contains the sugar ribose
- It is located throughout the cell (DNA is only in
the nucleus with some also in the mitochondria) - It contains the base uracil (U) instead of
thymine (T) - There are three types mRNA, rRNA, tRNA
- Its shorter (no introns)
50Transcription
- Protein synthesis begins with transcription (RNA
synthesis) of DNA - DNA never leaves the nucleus (protected)
51Steps of Transcription
- DNA molecule unzips (like in replication),
however, RNA nucleotides are now added to the
necessary areas (exons) by RNA Polymerases - For each gene, only one strand of the DNA is
transcribed, this is called the sense strand.
The other is called the anti-sense strand. - As double helix uncoils, nucleotides from the
mRNA find the appropriate pair by using single
DNA strand as a template (5 to 3 direction) - Uracil binds to exposed adenine bases and
cytosine binds to exposed guanine bases - mRNA joined and fused in a long chain
- mRNA move away from DNA and the DNA strands
rejoin again - mRNA leave the nucleus in search of the ribosomes
52http//fig.cox.miami.edu/cmallery/150/gene/mol_ge
n.htm
53- _____________________________DNA
- I I I I I I I I
- A G C T T A T C
- U C G A A U A G
- I I I I I I I I
- _____________________________RNA
54- mRNA reads code from DNA
- RNA codes for amino acids
- Some codes in mRNA are not for amino acids but
are terminators and initiators - Terminators end protein synthesis (stop codon)
- Initiators turning protein synthesis on (start
codon). Also called promoter site, starts RNA
transcription - Transcription Animation
55http//www.coolschool.ca/lor/BI12/unit6/U06L01.htm
56Example
- Original DNA sequence
- AAT GCC AGT GGT TCG CAC AAA
- Write the complementary DNA sequence
- Write the mRNA sequence
- How many amino acids are there?
- What is the amino acid sequence?
57- Do the same for the following DNA sequence
- TAC CAC GTG GAC TGA GGA CTC CTC ATC ATA
58Translation
- Translation is the next stage of protein
synthesis - Involves translating codons found on the mRNA
into a chain of amino acids (to form a protein) - Transfer RNA, tRNA is made up of a single strand
of RNA that folds into a clover-leaf shape - One lobe contains the anticodon, three
nucleotides that are complementary to the mRNA
codon - At the opposite end is a binding site for the
amino acid that corresponds to the codon - Ribosomal RNA, rRNA is a linear strand of RNA
that remains associated with the ribosomes
59More on tRNA
- The exposed bases are called the anticodon
- Each kind of tRNA molecule has a specific
anticodon - Ex) Glutamate carried by a tRNA molecule that
carries either the CUU or the CUC anticodon
(opposite to mRNA codons) - Ex) Valine carried by a tRNA molecule that has
the CAA anticodon
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61Steps of translation
- Translation is activated when an mRNA molecule
binds to an active ribosome complex in such a way
that two codons are exposed - The first tRNA molecule carrying the amino acid
methionine, base pairs with the start codon on
the mRNA, (AUG) - Another tRNA molecule arrives at the codon next
to the first tRNA, and the first tRNA passes its
amino acid on to the second tRNA - Enzymes catalyze the formation of a peptide bond
between the two amino acids - The ribosome moves along the mRNA strand one
codon at a time - The first tRNA molecule detaches from the mRNA
and picks up another amino acid as another tRNA
attaches to the mRNA.
62- NOTE The process begins with the presence of an
initiator (start codon) AUG and ends with the
presence of a stop (terminator codon) UAA, UGA,
or UAG on the mRNA. - Remember that the sequence of amino acids was
originally derived from the message carried by
mRNA from the nucleus (DNA) - Translation animation 1
- Translation animation 2 Translation 3
- Protein Synthesis Process
63http//users.rcn.com/jkimball.ma.ultranet/BiologyP
ages/T/Translation.html
64http//www.scq.ubc.ca/?p263
65Example
- Write a tRNA and amino acid sequence for the
following DNA sequence - TAC CAC TGA GGA CTC CTC CAT CAT
66Mutations
- A mutation is a permanent change in the DNA
sequence caused by mutagens (mutagenic agents) - Mutations
- are inheritable
- Arise from mistakes in DNA replication when one
nitrogen base is substituted for another - Creates a new genetic code that gives new
instructions to make amino acids (causes a
different protein to be made)
67Mutagenic agents
- Physical
- Pushing or tugging chromosomes
- Chemical
- Carcinogens, mustard gas, poor nutrition
- Medications
- Some antibiotics
- Radiation
- X-ray, ultraviolet radiation, cosmic rays
- Replication mistakes
- Natural mistakes occur during mitosis or meiosis
- Nutritional
- Lacking certain nucleotides in diet means you are
unable to provide the proper free nucleotide base
and this causes a mismatch - Biological
- Most viruses use genetic material of chromosomes
to reproduce. They join existing DNA to cause
permanent damage
68- Mutation Animation
- If a mutation is present in the gametes, it will
be passed on to further generations. This is why
it is particularly dangerous for pregnant women - Mutations can be grouped under 2 categories
- 1) Chromosomal mutations
- 2) Point mutations
69Chromosomal mutations
- Large mutations that visibly effect the structure
or number of chromosomes - Ex) nondisjunction, fragile-X-syndrome
70Point Mutations
- Alter a single gene. There are several types
- 1) Base substitution a foreign base replaces
the normal base in each strand of DNA. This
could result in one amino acid being different
animation - ACGCCA becomes CCGCCA
- Ex) Sickle cell anemia substitution of one
nitrogen base causes an inability to carry
sufficient oxygen
71- 2) Insertion A base is added into the normal DNA
sequence - ACGCCA becomes AACGCCA
- 3) Deletion a base is removed from the normal
DNA sequence - ACGCCA becomes CGCCA
- Ex) Cystic fibrosis deletion of 7th, 8th, and
9th nitrogen bases causes an inability to produce
protein that regulates chloride channels - animation
72- NOTE both insertion and deletion result in a
frame-shift mutation because every amino acid
after the point of mutation may be affected - 4) Translocation a sequence of nitrogen bases is
removed from one area and placed in another - ABCDEFGHIJ becomes ABFGHIJCDE
73- 5) Inversion reversal of a sequence of nitrogen
bases - ABCDEFGHIJ becomes ABEDCFGHIJ
- 6) Duplication duplicating a set or sequence of
nitrogen bases twice in one location - ABCDEFGHIJ becomes ABCABCDEFGHIJ
- 7) Silent mutations no phenotypic effect because
certain amino acids have more than one code - GTA (CAU) and GTG (CAC) both code for histidine
- NOTE The body can repair some mutations, but not
all
74Oncogenes and Cancer
- In normal cells, protein synthesis is carried out
by structural genes only when required - Because protein synthesis is not always required,
a regulator gene produces a repressor protein
which switches off protein synthesis and reducing
the rate of cell division - P53 animation
75- Uncontrolled cell division is cancer.
- Cancer is caused by a mutation due to an
environmental factor or carcinogen - Mutation could be a base substitution that
prevents the production of the repressor protein,
or the movement of a gene from one part of the
chromosome to another - If the structural gene is separated from its
regulator gene, it cannot be turned off (cancer
forms) - These genes that cannot be turned off are called
oncogenes
76- Most common oncogene ras
- Found in 50 of colon cancers and 30 of lung
cancers - Ras makes a protein that acts as an on switch
for cell division. Once a sufficient number of
cells are produced, it should shut off - Cancer-causing oncogene produces a protein that
blocks the off switch (causes cell division to
continue at an accelerated rate)
77Diagnosing Genetic Disorders
- Amniocentesis and Chorionic Villus Sampling can
take cell samples from a developing fetus or
embryo - This sample can be screened for genetic markers
for certain disorders - Uses a DNA probe which identifies problem genes
78Gene Therapy
- Targets genetic causes of diseases rather than
their symptoms - A DNA vector carries foreign DNA into target
cells of the patient - The vector is usually a virus that has been
genetically altered to carry a desired gene - The virus will eventually transfer the new gene
into the cells genome
79Gene Therapy
- Somatic Gene Therapy correcting genetic
disorders in somatic cells - Mutations can still be passed on to offspring
- Germ-line Therapy correcting the genetic
information in sperm and egg - Could have many negative effects on future
generations - Currently banned in Canada
80Ames Test
- Technology to determine quickly, cheaply, and
accurately if a chemical is mutagenic. - Any chemical that is mutagenic has potential to
be carcinogenic - We must test products for their cancer-causing
agents
81- Performed on bacteria that have been mutated so
they cannot produce histadine on their own (we
must supply them with it in order for them to
survive) - Plate this bacteria on a petri dish with no
histidine and the chemical being tested (expect
no growth) - If bacteria are found, conclusion can be made
that microbe has been mutated and is now
producing its own histidine
82- The more colonies that are found, the higher the
strength of mutagenic the chemical is which
indicates it is highly carcinogenic - Often chemical is added to liver enzymes because
chemicals are often harmless to an individual
until they are broken down in the liver into
toxic metabolites - NOTE some chemicals can cause cancer in some
individuals and not in others (because of
different nitrogen base sequences in each
individual)
83Biological Warfare
- Most disease-causing agents can be exploited for
biological weaponry - Microbe or toxin produced by microbe may be
harmful to livestock, grains, bacteria in soil,
or humans - Fortunately, few organisms are suited for mass
destruction
84Examples
- AIDS not transmitted by air
- Clostridium botulinum deadly in water (not
air)one kg of toxin in water reservoir kills 50
000 people (60 of population dies in 24 hrs)
85Research/Testing Stations
- Britain Porton Down
- USA Camp Detrick in Maryland
- Canada Suffield in Alberta
- Preferred microbe was anthrax bacillus (affects
cattle and humans).
86Anthrax
- Deadly spores (rod-shaped bacterium) live long
periods of time, are highly contagious, and
resistant to many environmental factors - We currently have the ability to create the
superbug through merging genes for rapid
reproduction and environmental resistancewhat do
you think would happen then?
87Mitochondrial DNA
- Mitochondria responsible for cellular
respiration - 1960s discovered that mitochondria contains
its own DNA (mtDNA) - They have an amount of control over what they do
(not completely controlled by nuclear DNA)
88Endosymbiotic Hypothesis
- Mitochondria once were free living bacteria that
were engulfed by other cells. - The two cells developed mutualistic relationship
(mitochondria had protection and food, engulfing
cell had a source of energy and oxygen)
89Evidence to support theory
- MtDNA resembles the loops of DNA found in
bacteria and viruses - The mtDNA is tiny compared to nuclear DNA
- Mitochondria divide and replicate independently
of the cell itself - the same theory is used to explain how
photosynthetic cells gained chloroplasts - NOTE The mtDNA in our bodies is maternal because
sperms mitochodria are lost when their tail
falls off.